Miyakogusa Predicted Gene

Lj0g3v0128599.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0128599.1 Non Characterized Hit- tr|D7MH08|D7MH08_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,34.76,1e-17,Nucleic acid-binding proteins,Nucleic acid-binding,
OB-fold-like; N-terminal, heterodimerisation dom,CUFF.7776.1
         (180 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g475140.1 | DNA-directed RNA polymerase II subunit Rpb7-li...   309   9e-85
Medtr1g069100.1 | DNA-directed RNA polymerase II subunit Rpb7-li...   206   1e-53
Medtr4g096810.1 | DNA-directed RNA polymerase II subunit Rpb7 | ...    80   1e-15
Medtr4g096810.3 | DNA-directed RNA polymerase II subunit Rpb7 | ...    80   1e-15
Medtr4g096810.4 | DNA-directed RNA polymerase II subunit Rpb7 | ...    80   1e-15
Medtr4g096810.2 | DNA-directed RNA polymerase II subunit Rpb7 | ...    80   1e-15

>Medtr1g475140.1 | DNA-directed RNA polymerase II subunit Rpb7-like
           protein | HC | chr1:33201883-33201326 | 20130731
          Length = 185

 Score =  309 bits (791), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 148/180 (82%), Positives = 161/180 (89%)

Query: 1   MFLKVQLSWNVIIAAENLQQGSLMLQRAILIRLLGDFAAKRATKDLGYFTAVTTLDKVGE 60
           MFLKVQL WNVIIAAENL+ GSLMLQRAILIRLL DFAAK+ATKD+GYF AVTTLDK+GE
Sbjct: 6   MFLKVQLPWNVIIAAENLKPGSLMLQRAILIRLLSDFAAKKATKDMGYFLAVTTLDKIGE 65

Query: 61  GKVRQHTGDVLFPVVFNGVTFKLFKGEILEGVVHKVLKHGVFLRCGPIEHVYLSNMKMAD 120
           GKVRQHTGDVLFPVVFN VTFK+FKGE+LEGVVHKVLKHGVF+R GPIE+ YLS+ KM  
Sbjct: 66  GKVRQHTGDVLFPVVFNAVTFKIFKGEVLEGVVHKVLKHGVFMRIGPIENAYLSSSKMPG 125

Query: 121 YRYFPGENAYFMNEKASKIAKDVTIRFVVIGTKWMEAEREFQALVSLEGDYLGPIASPDI 180
           Y Y  GEN YFMN+K  KIAKDV +R VVIGTKWMEAEREFQALV LEGDYLGPI+SPD+
Sbjct: 126 YVYVLGENPYFMNQKMPKIAKDVKVRVVVIGTKWMEAEREFQALVGLEGDYLGPISSPDM 185


>Medtr1g069100.1 | DNA-directed RNA polymerase II subunit Rpb7-like
           protein | HC | chr1:29662562-29663122 | 20130731
          Length = 186

 Score =  206 bits (524), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 112/189 (59%), Positives = 132/189 (69%), Gaps = 20/189 (10%)

Query: 2   FLKVQLSWNVIIAAENL----------QQGSLMLQRAILIRLLGDFAAKRATKDLGYFTA 51
           FLKVQL WN I+  E++          +  SL+LQ AILI  L DFAAK+ TKD+GYF  
Sbjct: 8   FLKVQLPWNAIVFQESMLPDFQEFLKMKPRSLILQLAILICPLSDFAAKKVTKDMGYFLV 67

Query: 52  VTTLDKVGEGKVRQHTGDVLFPVVFNGVTFKLFKGEILEGVVHKVLKHGVFLRCGPIEHV 111
            TTLDK+GEGKVRQHTGDVLF VVFN VTFK+FK      VVH + KHGVF+R GPI++ 
Sbjct: 68  ATTLDKIGEGKVRQHTGDVLFQVVFNVVTFKIFK------VVH-MNKHGVFMRIGPIKNA 120

Query: 112 YLSNMKMADYRYFPGENAYFMNEKASKIAKDVTIRFVVIGTKWMEAEREFQALVSLEGDY 171
           Y S+ KM  Y Y  GEN   MN+K  +IAKDV +R VVIG KWM+AEREF     LEGDY
Sbjct: 121 YPSSSKMLGYMYILGENQISMNQKMPEIAKDVKVRVVVIGMKWMQAEREFHG---LEGDY 177

Query: 172 LGPIASPDI 180
           LG I+SPD+
Sbjct: 178 LGSISSPDM 186


>Medtr4g096810.1 | DNA-directed RNA polymerase II subunit Rpb7 | HC
           | chr4:38520748-38524543 | 20130731
          Length = 176

 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/180 (31%), Positives = 96/180 (53%), Gaps = 9/180 (5%)

Query: 1   MFLKVQLSWNVIIAAENLQQGSLMLQRAILIRLLGDFAAKRATKDLGYFTAVTTLDKVGE 60
           MF  + L  N+ +      +    L+  ++ +L+ D     + +  G+  AVT ++ +G+
Sbjct: 1   MFFHIVLERNMQLHPRYFGRN---LRDNLVSKLMKDVEGTCSGRH-GFVVAVTGIENIGK 56

Query: 61  GKVRQHTGDVLFPVVFNGVTFKLFKGEILEGVVHKVLKHGVFLRCGPIEHVYLSNMKMAD 120
           G +R  TG V FPV +  V F+ FKGEILE VV  V K G F   GP++ +++SN  + D
Sbjct: 57  GIIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQ-IFVSNHLIPD 115

Query: 121 YRYFPGENA--YFMNEKASKIAKDVTIRFVVIGTKWMEAEREFQALVSLEGDYLGPIASP 178
              F   +   Y  ++ + KI KD  +R  +IGT+ ++A   F  + +++ D+LG I  P
Sbjct: 116 DMEFQTGDMPNYTTSDGSVKIQKDSEVRLKIIGTR-VDATEIF-CIGTIKDDFLGVINDP 173


>Medtr4g096810.3 | DNA-directed RNA polymerase II subunit Rpb7 | HC
           | chr4:38520719-38524543 | 20130731
          Length = 176

 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/180 (31%), Positives = 96/180 (53%), Gaps = 9/180 (5%)

Query: 1   MFLKVQLSWNVIIAAENLQQGSLMLQRAILIRLLGDFAAKRATKDLGYFTAVTTLDKVGE 60
           MF  + L  N+ +      +    L+  ++ +L+ D     + +  G+  AVT ++ +G+
Sbjct: 1   MFFHIVLERNMQLHPRYFGRN---LRDNLVSKLMKDVEGTCSGRH-GFVVAVTGIENIGK 56

Query: 61  GKVRQHTGDVLFPVVFNGVTFKLFKGEILEGVVHKVLKHGVFLRCGPIEHVYLSNMKMAD 120
           G +R  TG V FPV +  V F+ FKGEILE VV  V K G F   GP++ +++SN  + D
Sbjct: 57  GIIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQ-IFVSNHLIPD 115

Query: 121 YRYFPGENA--YFMNEKASKIAKDVTIRFVVIGTKWMEAEREFQALVSLEGDYLGPIASP 178
              F   +   Y  ++ + KI KD  +R  +IGT+ ++A   F  + +++ D+LG I  P
Sbjct: 116 DMEFQTGDMPNYTTSDGSVKIQKDSEVRLKIIGTR-VDATEIF-CIGTIKDDFLGVINDP 173


>Medtr4g096810.4 | DNA-directed RNA polymerase II subunit Rpb7 | HC
           | chr4:38520719-38524543 | 20130731
          Length = 176

 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/180 (31%), Positives = 96/180 (53%), Gaps = 9/180 (5%)

Query: 1   MFLKVQLSWNVIIAAENLQQGSLMLQRAILIRLLGDFAAKRATKDLGYFTAVTTLDKVGE 60
           MF  + L  N+ +      +    L+  ++ +L+ D     + +  G+  AVT ++ +G+
Sbjct: 1   MFFHIVLERNMQLHPRYFGRN---LRDNLVSKLMKDVEGTCSGRH-GFVVAVTGIENIGK 56

Query: 61  GKVRQHTGDVLFPVVFNGVTFKLFKGEILEGVVHKVLKHGVFLRCGPIEHVYLSNMKMAD 120
           G +R  TG V FPV +  V F+ FKGEILE VV  V K G F   GP++ +++SN  + D
Sbjct: 57  GIIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQ-IFVSNHLIPD 115

Query: 121 YRYFPGENA--YFMNEKASKIAKDVTIRFVVIGTKWMEAEREFQALVSLEGDYLGPIASP 178
              F   +   Y  ++ + KI KD  +R  +IGT+ ++A   F  + +++ D+LG I  P
Sbjct: 116 DMEFQTGDMPNYTTSDGSVKIQKDSEVRLKIIGTR-VDATEIF-CIGTIKDDFLGVINDP 173


>Medtr4g096810.2 | DNA-directed RNA polymerase II subunit Rpb7 | HC
           | chr4:38520719-38524543 | 20130731
          Length = 176

 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/180 (31%), Positives = 96/180 (53%), Gaps = 9/180 (5%)

Query: 1   MFLKVQLSWNVIIAAENLQQGSLMLQRAILIRLLGDFAAKRATKDLGYFTAVTTLDKVGE 60
           MF  + L  N+ +      +    L+  ++ +L+ D     + +  G+  AVT ++ +G+
Sbjct: 1   MFFHIVLERNMQLHPRYFGRN---LRDNLVSKLMKDVEGTCSGRH-GFVVAVTGIENIGK 56

Query: 61  GKVRQHTGDVLFPVVFNGVTFKLFKGEILEGVVHKVLKHGVFLRCGPIEHVYLSNMKMAD 120
           G +R  TG V FPV +  V F+ FKGEILE VV  V K G F   GP++ +++SN  + D
Sbjct: 57  GIIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQ-IFVSNHLIPD 115

Query: 121 YRYFPGENA--YFMNEKASKIAKDVTIRFVVIGTKWMEAEREFQALVSLEGDYLGPIASP 178
              F   +   Y  ++ + KI KD  +R  +IGT+ ++A   F  + +++ D+LG I  P
Sbjct: 116 DMEFQTGDMPNYTTSDGSVKIQKDSEVRLKIIGTR-VDATEIF-CIGTIKDDFLGVINDP 173