Miyakogusa Predicted Gene

Lj0g3v0128259.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0128259.1 Non Characterized Hit- tr|A5BCU5|A5BCU5_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,40.74,2e-16,seg,NULL,CUFF.7720.1
         (205 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g063210.1 | hypothetical protein | HC | chr3:28604148-2860...   107   1e-23
Medtr5g076140.1 | hypothetical protein | HC | chr5:32425329-3242...   103   1e-22

>Medtr3g063210.1 | hypothetical protein | HC |
           chr3:28604148-28606752 | 20130731
          Length = 681

 Score =  107 bits (266), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 93/224 (41%), Positives = 110/224 (49%), Gaps = 50/224 (22%)

Query: 1   MGTCLSKKKESSPSTL---IAEPNSATPPS--------KNSSGNGDPLSNPKMGTEPQAN 49
           MGTCLSKKK SS +T    +AE  SA   S         +SS NG  +S PK+ T+PQ  
Sbjct: 1   MGTCLSKKKNSSTTTSTSSLAEIKSAIATSVEFEWKNKNHSSHNGITMSKPKVETQPQVK 60

Query: 50  LXXXXXX---------XXXXXXXIFIIKHRKSHDDGGERNSRSQQNAHQPFEEMHDRIAQ 100
           L                      IFIIKHRKSHDD  E+NS                   
Sbjct: 61  LKKALEKHDDDSVEKHKGQVKKEIFIIKHRKSHDDS-EKNS------------------- 100

Query: 101 SPAGAANMGVVVRTSSCTKEEVDAILIQCGRLSRNSSGKQATXXXXXXXXXXXXXXXXXH 160
           S  GA  MG+  RTS+CTKE+VDAILI CGRLSRNSSGK A+                 +
Sbjct: 101 SIEGAELMGM--RTSNCTKEDVDAILIHCGRLSRNSSGK-ASSFREHRRRLSGSNRTRSN 157

Query: 161 DFDHCDDNDTISTEEDQKEANTNVNRSDLCEDDGIAAAEKRQRD 204
           DFDHCD++   S+E+ QK        SDL EDD    AEK  R+
Sbjct: 158 DFDHCDNDTIFSSEKGQKN-------SDLYEDDWKEPAEKLYRN 194


>Medtr5g076140.1 | hypothetical protein | HC |
           chr5:32425329-32428370 | 20130731
          Length = 651

 Score =  103 bits (257), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/155 (45%), Positives = 86/155 (55%), Gaps = 25/155 (16%)

Query: 64  IFIIKHRKSHDDGGERNSRSQQNAHQPFEEMHDRIAQSPAGAAN------------MGVV 111
           IFIIKHRKSHD+  E+NS        PF   H+  +Q   G  +            +G V
Sbjct: 71  IFIIKHRKSHDEKREKNSI----KITPFTVQHNVPSQQNDGLVSSSETESLNSNNKVGSV 126

Query: 112 V--RTSSCTKEEVDAILIQCGRLSRNSSGKQATXXXXXXXXXXXXXXXXXHDFDHCDDND 169
           V  RTSSCTKEEVDAILIQCGRLSR+SSGK AT                  DFDHCD+ND
Sbjct: 127 VGVRTSSCTKEEVDAILIQCGRLSRSSSGKAAT----SSSARKYSGSKRSFDFDHCDNND 182

Query: 170 TISTEEDQKEANTNVNRSDLCED-DGIAAAEKRQR 203
           +IS E++QK    + + SD  E+ DG+A    R R
Sbjct: 183 SISAEDEQKRV--HAHGSDNSEEYDGVARHNHRPR 215