Miyakogusa Predicted Gene

Lj0g3v0128249.1
Show Alignment: 

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0128249.1 tr|H9BZ74|H9BZ74_BIGNA Tic40 OS=Bigelowiella
natans PE=2 SV=1,35,4e-18,seg,NULL; Heat shock chaperonin-binding
motif.,Heat shock chaperonin-binding; UCH37_bd,NULL;
OS12G06,CUFF.7736.1
         (304 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g063200.1 | hydroxyproline-rich glycoprotein family protei...   395   e-110

>Medtr3g063200.1 | hydroxyproline-rich glycoprotein family protein |
           HC | chr3:28596031-28603623 | 20130731
          Length = 435

 Score =  395 bits (1015), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 211/306 (68%), Positives = 226/306 (73%), Gaps = 2/306 (0%)

Query: 1   MQQAFKTMMGGMNSQSNQXXXXXXXXXXXXXXXXXXXXXXXXXXXXFGTQSRAPSTPSAS 60
           MQQAFKTMMG MN+Q+N                               TQS+A ST +AS
Sbjct: 128 MQQAFKTMMGQMNTQNNPFESGAFSPGSPFPFPMPTPPGPAAPANSTSTQSQASSTRTAS 187

Query: 61  QSTITVDIPPTKVEAAPA--TXXXXXXXXXXXXXXXGFVDVSPEETVQKSPXXXXXXXXX 118
           QST+TVDIP TKVE++P                    FVDVSPEETVQ++          
Sbjct: 188 QSTVTVDIPATKVESSPGPDINVKDEVEVKNEPKKSAFVDVSPEETVQQNAFERFKDIDS 247

Query: 119 XXXXXXXWVPKEAFQNGTPSNQGVGDSPGSQSARKSVLSVDALEKMMDDPTVQKMVFPYL 178
                    P EA QNG PSNQG GDSPGSQSARKSVLSVDALEKMM+DPTVQKMV+PYL
Sbjct: 248 SSSFKEARAPAEASQNGAPSNQGFGDSPGSQSARKSVLSVDALEKMMEDPTVQKMVYPYL 307

Query: 179 PEEMRNPTTFKWMLQNPQYRQQLEEMLNNMGGSTEWDGQMMDTLKNFDLNSPEVKQQFDQ 238
           PEEMRNPTTFKWMLQNP+YRQQLEEMLNNMGG TEWD +MMDTLKNFDLNSP+VKQQFDQ
Sbjct: 308 PEEMRNPTTFKWMLQNPEYRQQLEEMLNNMGGGTEWDSRMMDTLKNFDLNSPDVKQQFDQ 367

Query: 239 IGLSPEEVISKIMANPDVAMAFQNPRVQAAIMDCSQNPLNIAKYQNDKEVMDVFNKISEL 298
           IGLSPEEVISKIMANPDVAMAFQNPRVQAAIMDCSQNP+NIAKYQNDKEVMDVFNKISEL
Sbjct: 368 IGLSPEEVISKIMANPDVAMAFQNPRVQAAIMDCSQNPMNIAKYQNDKEVMDVFNKISEL 427

Query: 299 FPGVSG 304
           FPGVSG
Sbjct: 428 FPGVSG 433