Miyakogusa Predicted Gene

Lj0g3v0128199.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0128199.1 tr|B9GN43|B9GN43_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_551661 PE=3
SV=1,40.93,6e-18,seg,NULL,CUFF.7715.1
         (203 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g066320.1 | chromosome-associated kinesin KIF4A-like prote...   154   5e-38
Medtr3g100250.1 | hypothetical protein | HC | chr3:46073137-4607...   114   7e-26
Medtr3g100270.1 | chromosome-associated kinesin KIF4A-like prote...    70   1e-12

>Medtr5g066320.1 | chromosome-associated kinesin KIF4A-like protein |
            HC | chr5:27954430-27964188 | 20130731
          Length = 1273

 Score =  154 bits (390), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 95/175 (54%), Positives = 117/175 (66%), Gaps = 10/175 (5%)

Query: 9    TGNNPGIEEADKDRLLATQGAELLQGALSDRPAETNSDQAPRKPLSDIGNTQIKPNL--- 65
            T N+PG +EADK+RLLATQGAELLQGAL   PAE N+D  PRK LSDIGNT  K N    
Sbjct: 1085 TVNDPGSDEADKNRLLATQGAELLQGALVG-PAEANTDHGPRKALSDIGNTLTKSNAMKG 1143

Query: 66   EQRKKLRKSTIILVSDPPPSS-QPEISNVRIPKKQNITKIYETNIAANSCRPQRKPPSRP 124
             QRKK RKS+I+LV++PPPSS QP   N   PKK+      E NI  +   PQ+  P + 
Sbjct: 1144 NQRKKWRKSSIVLVTEPPPSSSQP--GNSDAPKKEKNNN-SEANIYEDI--PQKTHPPKF 1198

Query: 125  ENAACAPRAEANFVDPDSPVKRPSAARRAGSSNTGVPLWDRNAGKSDESVSKEPE 179
            ENA+  P+ E N++D   P+K P A ++ G SNT +PL D+NA K DES+ KEPE
Sbjct: 1199 ENASLPPKPEINYIDTKIPLKIPRAMQKQGFSNTILPLGDKNANKQDESIKKEPE 1253


>Medtr3g100250.1 | hypothetical protein | HC |
           chr3:46073137-46072590 | 20130731
          Length = 151

 Score =  114 bits (285), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 79/142 (55%), Positives = 92/142 (64%), Gaps = 9/142 (6%)

Query: 67  QRKKLRKSTIILVSD-PPPSSQPEISNVRIPKKQ---NITKIYETNIAANSCRPQRKPPS 122
           ++KKL+K+TIILV + PPPS Q E SNV  PKKQ   + +   E N+A     P + P S
Sbjct: 14  KKKKLQKATIILVPNLPPPSLQSENSNVPKPKKQFNNSSSSSNEPNVAFKI--PPKLPRS 71

Query: 123 RPENAACAPRAEANFVDPDSPVKRPSAARRAGSSNTGVPLWDRN-AGKSDESVSKEPENI 181
           +PE AA AP+AE NFVDPDSPVK P   R+A S N GVP WDRN AGKSDESVSKEPE  
Sbjct: 72  KPEYAASAPKAECNFVDPDSPVKIPRTVRKAPSLNGGVPFWDRNAAGKSDESVSKEPEVC 131

Query: 182 EAXXXXXXXXXXXXEEKENSRR 203
           E             EEKEN+RR
Sbjct: 132 E--DRRRPRQKRTQEEKENNRR 151


>Medtr3g100270.1 | chromosome-associated kinesin KIF4A-like protein |
            HC | chr3:46086948-46078621 | 20130731
          Length = 1119

 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 32/37 (86%), Positives = 34/37 (91%)

Query: 24   LATQGAELLQGALSDRPAETNSDQAPRKPLSDIGNTQ 60
            LATQGAELLQ AL+DRPAE NSDQ PR+PLSDIGNTQ
Sbjct: 1081 LATQGAELLQAALADRPAEANSDQGPREPLSDIGNTQ 1117