Miyakogusa Predicted Gene

Lj0g3v0126989.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0126989.1 Non Characterized Hit- tr|B9FBZ9|B9FBZ9_ORYSJ
Putative uncharacterized protein OS=Oryza sativa
subsp,62.34,1e-16,seg,NULL; Patched,Patched; NIEMANN-PICK C1,NULL;
PATCHED-RELATED,NULL; SSD,Sterol-sensing domain,CUFF.7670.1
         (92 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g099070.1 | niemann-pick C1-like protein | HC | chr5:43436...    61   2e-10
Medtr3g115450.1 | niemann-pick C1-like protein | HC | chr3:54007...    56   7e-09
Medtr3g115450.3 | niemann-pick C1-like protein | HC | chr3:54006...    56   8e-09
Medtr3g115450.4 | niemann-pick C1-like protein | HC | chr3:54006...    56   8e-09
Medtr3g115450.2 | niemann-pick C1-like protein | HC | chr3:54006...    56   8e-09

>Medtr5g099070.1 | niemann-pick C1-like protein | HC |
           chr5:43436947-43416142 | 20130731
          Length = 1340

 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/33 (90%), Positives = 31/33 (93%)

Query: 26  TADIITILVSYIVMFAYISVTLGDTPPRLSSFY 58
           TAD+ITILVSYIVMFAYISVTLGDTP  LSSFY
Sbjct: 643 TADVITILVSYIVMFAYISVTLGDTPHHLSSFY 675


>Medtr3g115450.1 | niemann-pick C1-like protein | HC |
           chr3:54007010-53991920 | 20130731
          Length = 1362

 Score = 56.2 bits (134), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 28/33 (84%), Positives = 32/33 (96%), Gaps = 1/33 (3%)

Query: 26  TADIITILVSYIVMFAYISVTLGDTPPRLSSFY 58
           TAD+ITILVSY+VMFAYIS+TLGDT P+LSSFY
Sbjct: 626 TADVITILVSYLVMFAYISLTLGDT-PQLSSFY 657


>Medtr3g115450.3 | niemann-pick C1-like protein | HC |
           chr3:54006798-53989443 | 20130731
          Length = 1284

 Score = 55.8 bits (133), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 28/33 (84%), Positives = 32/33 (96%), Gaps = 1/33 (3%)

Query: 26  TADIITILVSYIVMFAYISVTLGDTPPRLSSFY 58
           TAD+ITILVSY+VMFAYIS+TLGDT P+LSSFY
Sbjct: 622 TADVITILVSYLVMFAYISLTLGDT-PQLSSFY 653


>Medtr3g115450.4 | niemann-pick C1-like protein | HC |
           chr3:54006798-53989923 | 20130731
          Length = 1284

 Score = 55.8 bits (133), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 28/33 (84%), Positives = 32/33 (96%), Gaps = 1/33 (3%)

Query: 26  TADIITILVSYIVMFAYISVTLGDTPPRLSSFY 58
           TAD+ITILVSY+VMFAYIS+TLGDT P+LSSFY
Sbjct: 622 TADVITILVSYLVMFAYISLTLGDT-PQLSSFY 653


>Medtr3g115450.2 | niemann-pick C1-like protein | HC |
           chr3:54006806-53989459 | 20130731
          Length = 1284

 Score = 55.8 bits (133), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 28/33 (84%), Positives = 32/33 (96%), Gaps = 1/33 (3%)

Query: 26  TADIITILVSYIVMFAYISVTLGDTPPRLSSFY 58
           TAD+ITILVSY+VMFAYIS+TLGDT P+LSSFY
Sbjct: 622 TADVITILVSYLVMFAYISLTLGDT-PQLSSFY 653