Miyakogusa Predicted Gene

Lj0g3v0126969.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0126969.1 tr|G7KK50|G7KK50_MEDTR Alanyl-tRNA synthetase
(Fragment) OS=Medicago truncatula GN=MTR_6g045600
PE=3,94.85,0,tRNA-synt_2c,Alanyl-tRNA synthetase, class IIc,
N-terminal; SUBFAMILY NOT NAMED,Alanine-tRNA ligase,,CUFF.7668.1
         (97 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g074640.1 | alanine-tRNA ligase | HC | chr4:28430949-28445...   196   3e-51
Medtr4g074670.1 | alanyl-tRNA synthetase | HC | chr4:28452022-28...   186   4e-48
Medtr4g074670.2 | alanyl-tRNA synthetase | HC | chr4:28452943-28...   183   3e-47
Medtr3g118360.1 | alanine-tRNA ligase | HC | chr3:55395797-55404...    54   3e-08
Medtr3g118360.4 | alanine-tRNA ligase | HC | chr3:55395797-55404...    54   3e-08
Medtr3g118360.2 | alanine-tRNA ligase | HC | chr3:55395877-55404...    54   5e-08
Medtr3g118360.3 | alanine-tRNA ligase | HC | chr3:55395877-55403...    54   5e-08

>Medtr4g074640.1 | alanine-tRNA ligase | HC | chr4:28430949-28445218
           | 20130731
          Length = 950

 Score =  196 bits (499), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 92/97 (94%), Positives = 96/97 (98%)

Query: 1   MGFERLTSILQNKMSNYDTDVFLPIFDAIQLATGARPYSGKVGPDDADKVDMAYRVVADH 60
           MGFERLTSILQ K+SNYDTDVF+PIFDAIQLATGARPYSGKVGP+DADK+DMAYRVVADH
Sbjct: 247 MGFERLTSILQRKLSNYDTDVFMPIFDAIQLATGARPYSGKVGPEDADKIDMAYRVVADH 306

Query: 61  IRTLSFAIADGSRPGNEGREYVLRRILRRAVRYGREV 97
           IRTLSFAIADGSRPGNEGREYVLRRILRRAVRYGREV
Sbjct: 307 IRTLSFAIADGSRPGNEGREYVLRRILRRAVRYGREV 343


>Medtr4g074670.1 | alanyl-tRNA synthetase | HC |
           chr4:28452022-28459826 | 20130731
          Length = 635

 Score =  186 bits (472), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 89/97 (91%), Positives = 92/97 (94%)

Query: 1   MGFERLTSILQNKMSNYDTDVFLPIFDAIQLATGARPYSGKVGPDDADKVDMAYRVVADH 60
           MGFERLTSILQ+K SNYDTDVF+PIFDAIQ ATGARPYSGKVGP DADKVDMAYRVVADH
Sbjct: 247 MGFERLTSILQHKNSNYDTDVFVPIFDAIQQATGARPYSGKVGPHDADKVDMAYRVVADH 306

Query: 61  IRTLSFAIADGSRPGNEGREYVLRRILRRAVRYGREV 97
           IRTLS AIADGS+PGN GREYVLRRILRRAVRYGREV
Sbjct: 307 IRTLSIAIADGSQPGNVGREYVLRRILRRAVRYGREV 343


>Medtr4g074670.2 | alanyl-tRNA synthetase | HC |
           chr4:28452943-28459496 | 20130731
          Length = 453

 Score =  183 bits (465), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 89/97 (91%), Positives = 92/97 (94%)

Query: 1   MGFERLTSILQNKMSNYDTDVFLPIFDAIQLATGARPYSGKVGPDDADKVDMAYRVVADH 60
           MGFERLTSILQ+K SNYDTDVF+PIFDAIQ ATGARPYSGKVGP DADKVDMAYRVVADH
Sbjct: 65  MGFERLTSILQHKNSNYDTDVFVPIFDAIQQATGARPYSGKVGPHDADKVDMAYRVVADH 124

Query: 61  IRTLSFAIADGSRPGNEGREYVLRRILRRAVRYGREV 97
           IRTLS AIADGS+PGN GREYVLRRILRRAVRYGREV
Sbjct: 125 IRTLSIAIADGSQPGNVGREYVLRRILRRAVRYGREV 161


>Medtr3g118360.1 | alanine-tRNA ligase | HC | chr3:55395797-55404715
           | 20130731
          Length = 980

 Score = 54.3 bits (129), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 40/96 (41%), Positives = 57/96 (59%), Gaps = 8/96 (8%)

Query: 1   MGFERLTSILQNKMSNYDTDVFLPIFD-AIQLATGARPYSGKVGPDDADKVDMAYRVVAD 59
           +G ER+  ILQ   +NY+TD+ LPI + A +LA  +   S        D+     ++V D
Sbjct: 301 LGLERMARILQKAPNNYETDLILPIIEKASELANISYGISD-------DQTKRYLKIVGD 353

Query: 60  HIRTLSFAIADGSRPGNEGREYVLRRILRRAVRYGR 95
           H+R + F I+DG  P N GR YV+RR++RR VR GR
Sbjct: 354 HMRAIVFLISDGVVPSNVGRGYVVRRLIRRVVRTGR 389


>Medtr3g118360.4 | alanine-tRNA ligase | HC | chr3:55395797-55404715
           | 20130731
          Length = 702

 Score = 53.9 bits (128), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 40/96 (41%), Positives = 57/96 (59%), Gaps = 8/96 (8%)

Query: 1   MGFERLTSILQNKMSNYDTDVFLPIFD-AIQLATGARPYSGKVGPDDADKVDMAYRVVAD 59
           +G ER+  ILQ   +NY+TD+ LPI + A +LA  +   S        D+     ++V D
Sbjct: 23  LGLERMARILQKAPNNYETDLILPIIEKASELANISYGISD-------DQTKRYLKIVGD 75

Query: 60  HIRTLSFAIADGSRPGNEGREYVLRRILRRAVRYGR 95
           H+R + F I+DG  P N GR YV+RR++RR VR GR
Sbjct: 76  HMRAIVFLISDGVVPSNVGRGYVVRRLIRRVVRTGR 111


>Medtr3g118360.2 | alanine-tRNA ligase | HC | chr3:55395877-55404591
           | 20130731
          Length = 871

 Score = 53.5 bits (127), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 40/96 (41%), Positives = 57/96 (59%), Gaps = 8/96 (8%)

Query: 1   MGFERLTSILQNKMSNYDTDVFLPIFD-AIQLATGARPYSGKVGPDDADKVDMAYRVVAD 59
           +G ER+  ILQ   +NY+TD+ LPI + A +LA  +   S        D+     ++V D
Sbjct: 301 LGLERMARILQKAPNNYETDLILPIIEKASELANISYGISD-------DQTKRYLKIVGD 353

Query: 60  HIRTLSFAIADGSRPGNEGREYVLRRILRRAVRYGR 95
           H+R + F I+DG  P N GR YV+RR++RR VR GR
Sbjct: 354 HMRAIVFLISDGVVPSNVGRGYVVRRLIRRVVRTGR 389


>Medtr3g118360.3 | alanine-tRNA ligase | HC | chr3:55395877-55403229
           | 20130731
          Length = 869

 Score = 53.5 bits (127), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 40/96 (41%), Positives = 57/96 (59%), Gaps = 8/96 (8%)

Query: 1   MGFERLTSILQNKMSNYDTDVFLPIFD-AIQLATGARPYSGKVGPDDADKVDMAYRVVAD 59
           +G ER+  ILQ   +NY+TD+ LPI + A +LA  +   S        D+     ++V D
Sbjct: 301 LGLERMARILQKAPNNYETDLILPIIEKASELANISYGISD-------DQTKRYLKIVGD 353

Query: 60  HIRTLSFAIADGSRPGNEGREYVLRRILRRAVRYGR 95
           H+R + F I+DG  P N GR YV+RR++RR VR GR
Sbjct: 354 HMRAIVFLISDGVVPSNVGRGYVVRRLIRRVVRTGR 389