Miyakogusa Predicted Gene

Lj0g3v0126879.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0126879.1 Non Characterized Hit- tr|I3SQ61|I3SQ61_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,86.61,0,coiled-coil,NULL; 60S RIBOSOMAL PROTEIN L30-LIKE
PROTEIN,NULL; 60S RIBOSOMAL PROTEIN L24,Ribosomal p,CUFF.7632.1
         (135 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g055270.1 | ribosome biogenesis RLP24-like protein | HC | ...   158   1e-39
Medtr2g084925.1 | ribosome biogenesis RLP24-like protein | HC | ...   149   9e-37
Medtr1g061670.1 | 60S ribosomal protein L24-2 | HC | chr1:269377...    52   1e-07
Medtr7g103320.2 | 60S ribosomal protein L24-2 | HC | chr7:417846...    52   1e-07
Medtr7g103320.1 | 60S ribosomal protein L24-2 | HC | chr7:417846...    52   1e-07
Medtr7g103320.3 | 60S ribosomal protein L24-2 | HC | chr7:417846...    52   1e-07

>Medtr4g055270.1 | ribosome biogenesis RLP24-like protein | HC |
           chr4:20110107-20107324 | 20130731
          Length = 162

 Score =  158 bits (399), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 81/119 (68%), Positives = 94/119 (78%)

Query: 13  GHGIQFVRNDAKIFRFYRSKCHKNFKMKRNPRKVKWTKAYRRVHGKEMTRIQTFEFERKR 72
           GHGIQFVRNDAKIFRF RSKCHKNFKMKRNPRKVKWTKAYRRVHGK+MT+  TFEFERKR
Sbjct: 16  GHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRVHGKDMTQDSTFEFERKR 75

Query: 73  NRPERYDRNVKEDVLXXXXXXXXXXXSREETHHKKMKQGKNEKQRREAEKELKQGINMV 131
           NRPERYDRN+ E+VL           SR E+HH    +GK +K ++EA KE +Q I+++
Sbjct: 76  NRPERYDRNLTEEVLKAIPKIAKIQVSRAESHHAIRMKGKKKKVQKEAAKEYEQSIHLL 134


>Medtr2g084925.1 | ribosome biogenesis RLP24-like protein | HC |
           chr2:36043720-36045454 | 20130731
          Length = 161

 Score =  149 bits (375), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 79/127 (62%), Positives = 92/127 (72%)

Query: 5   FFNCIPGSGHGIQFVRNDAKIFRFYRSKCHKNFKMKRNPRKVKWTKAYRRVHGKEMTRIQ 64
           F +     GHGIQFVRN AKIFRF RSKCHKNF+MKRNPRKVKWTKAYRRVH K MT+  
Sbjct: 8   FCSSTVYPGHGIQFVRNVAKIFRFCRSKCHKNFEMKRNPRKVKWTKAYRRVHVKAMTQDS 67

Query: 65  TFEFERKRNRPERYDRNVKEDVLXXXXXXXXXXXSREETHHKKMKQGKNEKQRREAEKEL 124
           TFE ERKRNRPERYDR + E+VL           +RE   HKK  +G  +K +REA++EL
Sbjct: 68  TFECERKRNRPERYDRILNENVLKAIPMIVKIRDTREGRLHKKRMEGNKKKVQREAKEEL 127

Query: 125 KQGINMV 131
           +Q I+MV
Sbjct: 128 EQSIHMV 134


>Medtr1g061670.1 | 60S ribosomal protein L24-2 | HC |
          chr1:26937773-26935483 | 20130731
          Length = 163

 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 2/75 (2%)

Query: 13 GHGIQFVRNDAKIFRFYRSKCHKNFKMKRNPRKVKWTKAYRRVHGKEMTRIQTFEFERKR 72
          G GI+F+R+D+++F F  SKC + F  K  P K+ WT  YR+ H K++   Q    +R+R
Sbjct: 18 GRGIRFIRSDSQVFLFVNSKCKRYFHNKLKPSKLTWTAMYRKQHKKDIA--QEAVKKRRR 75

Query: 73 NRPERYDRNVKEDVL 87
             + Y R++    L
Sbjct: 76 ATKKPYSRSIVGATL 90


>Medtr7g103320.2 | 60S ribosomal protein L24-2 | HC |
          chr7:41784638-41791034 | 20130731
          Length = 163

 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 2/75 (2%)

Query: 13 GHGIQFVRNDAKIFRFYRSKCHKNFKMKRNPRKVKWTKAYRRVHGKEMTRIQTFEFERKR 72
          G GI+F+R+D+++F F  SKC + F  K  P K+ WT  YR+ H K++   Q    +R+R
Sbjct: 18 GRGIRFIRSDSQVFLFVNSKCKRYFHNKLKPSKLTWTAMYRKQHKKDIA--QEAVKKRRR 75

Query: 73 NRPERYDRNVKEDVL 87
             + Y R++    L
Sbjct: 76 ATKKPYSRSIVGATL 90


>Medtr7g103320.1 | 60S ribosomal protein L24-2 | HC |
          chr7:41784638-41791010 | 20130731
          Length = 163

 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 2/75 (2%)

Query: 13 GHGIQFVRNDAKIFRFYRSKCHKNFKMKRNPRKVKWTKAYRRVHGKEMTRIQTFEFERKR 72
          G GI+F+R+D+++F F  SKC + F  K  P K+ WT  YR+ H K++   Q    +R+R
Sbjct: 18 GRGIRFIRSDSQVFLFVNSKCKRYFHNKLKPSKLTWTAMYRKQHKKDIA--QEAVKKRRR 75

Query: 73 NRPERYDRNVKEDVL 87
             + Y R++    L
Sbjct: 76 ATKKPYSRSIVGATL 90


>Medtr7g103320.3 | 60S ribosomal protein L24-2 | HC |
          chr7:41784600-41786598 | 20130731
          Length = 163

 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 2/75 (2%)

Query: 13 GHGIQFVRNDAKIFRFYRSKCHKNFKMKRNPRKVKWTKAYRRVHGKEMTRIQTFEFERKR 72
          G GI+F+R+D+++F F  SKC + F  K  P K+ WT  YR+ H K++   Q    +R+R
Sbjct: 18 GRGIRFIRSDSQVFLFVNSKCKRYFHNKLKPSKLTWTAMYRKQHKKDIA--QEAVKKRRR 75

Query: 73 NRPERYDRNVKEDVL 87
             + Y R++    L
Sbjct: 76 ATKKPYSRSIVGATL 90