Miyakogusa Predicted Gene

Lj0g3v0126749.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0126749.1 Non Characterized Hit- tr|B9R8H5|B9R8H5_RICCO
Ubiquitin-protein ligase, putative OS=Ricinus
communis,26.52,0.000000000000003,DUF295,Protein of unknown function
DUF295,gene.g9684.t1.1
         (378 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g114990.1 | ubiquitin-protein ligase | HC | chr3:53705316-...    52   9e-07
Medtr3g114990.3 | ubiquitin-protein ligase | HC | chr3:53705316-...    52   9e-07
Medtr3g114990.2 | ubiquitin-protein ligase | HC | chr3:53705316-...    52   9e-07

>Medtr3g114990.1 | ubiquitin-protein ligase | HC |
           chr3:53705316-53703014 | 20130731
          Length = 410

 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 59/206 (28%), Positives = 87/206 (42%), Gaps = 36/206 (17%)

Query: 154 VIAGITCGWNLTWCSIGDQEWKECRSNGKYL---NVTFHNGKLYAINLNCDKIDIFRVDN 210
           ++ G +C  NL +C  G   W        Y    +V ++NG  YA++     I +  V N
Sbjct: 194 IVDGYSCN-NLAFCKKGYDSWIFLTKKNDYYFWEDVVYYNGLFYAVSKG-GTIAVCDV-N 250

Query: 211 DQQKLILLDTICVTFPTVSRRSDIFDVYLVESKGSLLVVKR----------NYDYGALIH 260
             +  I   T+ V F       DI   Y+V S   +L+V R          NYD   L++
Sbjct: 251 SHRVSIFQMTVPVQF-----SGDIH--YVVFSGEDMLLVNRVLEEDFSDEPNYD--MLVY 301

Query: 261 PTIGFDIFKVQERISGDSPHLLVNVESLEDQALFFSGLFYESLSAKDCPGLRGNRIYFI- 319
            T+GF +FK+       +      +E+L D+ALF         SA D  G  G+ IYF  
Sbjct: 302 RTVGFTVFKMDWNAMAWN-----RIEALGDKALFVGVNSSMCFSAGDFVGCCGDCIYFTD 356

Query: 320 -----GHQGGNVDSEFGLFSLEEGII 340
                 H       +FG+F L +GII
Sbjct: 357 DYSEDNHDDACGKHDFGIFRLYDGII 382


>Medtr3g114990.3 | ubiquitin-protein ligase | HC |
           chr3:53705316-53701730 | 20130731
          Length = 410

 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 59/206 (28%), Positives = 87/206 (42%), Gaps = 36/206 (17%)

Query: 154 VIAGITCGWNLTWCSIGDQEWKECRSNGKYL---NVTFHNGKLYAINLNCDKIDIFRVDN 210
           ++ G +C  NL +C  G   W        Y    +V ++NG  YA++     I +  V N
Sbjct: 194 IVDGYSCN-NLAFCKKGYDSWIFLTKKNDYYFWEDVVYYNGLFYAVSKG-GTIAVCDV-N 250

Query: 211 DQQKLILLDTICVTFPTVSRRSDIFDVYLVESKGSLLVVKR----------NYDYGALIH 260
             +  I   T+ V F       DI   Y+V S   +L+V R          NYD   L++
Sbjct: 251 SHRVSIFQMTVPVQF-----SGDIH--YVVFSGEDMLLVNRVLEEDFSDEPNYD--MLVY 301

Query: 261 PTIGFDIFKVQERISGDSPHLLVNVESLEDQALFFSGLFYESLSAKDCPGLRGNRIYFI- 319
            T+GF +FK+       +      +E+L D+ALF         SA D  G  G+ IYF  
Sbjct: 302 RTVGFTVFKMDWNAMAWN-----RIEALGDKALFVGVNSSMCFSAGDFVGCCGDCIYFTD 356

Query: 320 -----GHQGGNVDSEFGLFSLEEGII 340
                 H       +FG+F L +GII
Sbjct: 357 DYSEDNHDDACGKHDFGIFRLYDGII 382


>Medtr3g114990.2 | ubiquitin-protein ligase | HC |
           chr3:53705316-53701195 | 20130731
          Length = 410

 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 59/206 (28%), Positives = 87/206 (42%), Gaps = 36/206 (17%)

Query: 154 VIAGITCGWNLTWCSIGDQEWKECRSNGKYL---NVTFHNGKLYAINLNCDKIDIFRVDN 210
           ++ G +C  NL +C  G   W        Y    +V ++NG  YA++     I +  V N
Sbjct: 194 IVDGYSCN-NLAFCKKGYDSWIFLTKKNDYYFWEDVVYYNGLFYAVSKG-GTIAVCDV-N 250

Query: 211 DQQKLILLDTICVTFPTVSRRSDIFDVYLVESKGSLLVVKR----------NYDYGALIH 260
             +  I   T+ V F       DI   Y+V S   +L+V R          NYD   L++
Sbjct: 251 SHRVSIFQMTVPVQF-----SGDIH--YVVFSGEDMLLVNRVLEEDFSDEPNYD--MLVY 301

Query: 261 PTIGFDIFKVQERISGDSPHLLVNVESLEDQALFFSGLFYESLSAKDCPGLRGNRIYFI- 319
            T+GF +FK+       +      +E+L D+ALF         SA D  G  G+ IYF  
Sbjct: 302 RTVGFTVFKMDWNAMAWN-----RIEALGDKALFVGVNSSMCFSAGDFVGCCGDCIYFTD 356

Query: 320 -----GHQGGNVDSEFGLFSLEEGII 340
                 H       +FG+F L +GII
Sbjct: 357 DYSEDNHDDACGKHDFGIFRLYDGII 382