Miyakogusa Predicted Gene

Lj0g3v0125279.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0125279.1 Non Characterized Hit- tr|I1L2W3|I1L2W3_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max
PE=4,89.86,0,seg,NULL; SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL,CUFF.7551.1
         (691 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g031910.1 | mediator of RNA polymerase II transcription su...  1174   0.0  

>Medtr1g031910.1 | mediator of RNA polymerase II transcription
           subunit 23 | HC | chr1:11217223-11235651 | 20130731
          Length = 1615

 Score = 1174 bits (3036), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 567/671 (84%), Positives = 595/671 (88%), Gaps = 1/671 (0%)

Query: 22  HPARAPILDLFNLYLGLGRNNRHKPDDLLREPPNKTQKRVHALNRELPPPNEQFILDFEQ 81
           HPAR PILDLFNLYLGLGRN+R+KPDD +REPPNKTQKRVHA+NRELPPPNEQFI+DFEQ
Sbjct: 23  HPARVPILDLFNLYLGLGRNSRNKPDDSIREPPNKTQKRVHAINRELPPPNEQFIVDFEQ 82

Query: 82  LQSQFPDQDQFRSVTEAILISLVVQCSGHGPRSDFLLYVLRTLCGIGCINWDXXXXXXXX 141
           LQSQFPD +Q RSVTEAILI LVVQCSGHGPRSDFLL+VLR+LCGIGCINWD        
Sbjct: 83  LQSQFPDHEQLRSVTEAILIPLVVQCSGHGPRSDFLLFVLRSLCGIGCINWDTFLPALVS 142

Query: 142 XXXXXXXPVGQMSQAVPTVXXXXXXXXGMLPPQGTVANS-NFQSLNPASPLTSVHSIGSP 200
                  PVGQ SQAV TV        GMLPP  T+ANS NFQS NPASPLTSVH+IGSP
Sbjct: 143 SVSSAEIPVGQTSQAVSTVTSSSLSQSGMLPPPSTIANSSNFQSSNPASPLTSVHTIGSP 202

Query: 201 AQPTIESLSYATLSPVKXXXXXXXXXXXKLRGSPSVRNNDISNSSLRQLCCKIILTGLEV 260
           AQ +IE LS A LSPVK           K RGSPSVRNNDIS SSLRQLCCKIILTGLE 
Sbjct: 203 AQSSIEPLSCAALSPVKSSDISSAGQQSKQRGSPSVRNNDISYSSLRQLCCKIILTGLEF 262

Query: 261 SLKPVTYAEIFHHMLNWLVNWDQRQQGVDETDILKSWRPDKAVIAWLHSCLDVIWLLVDE 320
           SLKP+TYAEIF+HMLNWLVNWDQ QQGVDE+D  KSWRPD A++AWLHSCLDVIWLLVDE
Sbjct: 263 SLKPMTYAEIFNHMLNWLVNWDQGQQGVDESDNQKSWRPDNALVAWLHSCLDVIWLLVDE 322

Query: 321 GKCRVPFYELLRSDLQFIENIPDDEALFTLILEIHRRRDMMAMHMQMLDQHLHCPTFGTH 380
           GKCRVPFYELLRSDLQF+ENIPDDEALFTLILEIHRRRDMMAMHMQMLDQHLHCPTFGTH
Sbjct: 323 GKCRVPFYELLRSDLQFMENIPDDEALFTLILEIHRRRDMMAMHMQMLDQHLHCPTFGTH 382

Query: 381 RILNQTTPNISGEAAAHLRLSPISYLSVLGEPLHAEDITNSIQKGSLDWERAVRCIRHAL 440
           RILNQTTP ISGE  AHLRLSPISYLSVLGEPL+ EDI  SIQKGSLDWERAVRCIRHAL
Sbjct: 383 RILNQTTPTISGEGIAHLRLSPISYLSVLGEPLNGEDIAISIQKGSLDWERAVRCIRHAL 442

Query: 441 RTTPSPDWWRRVLVLAPCYRPSSQAPTAGAVFSSEMICEATIDRIVELLKLTNSEINCWQ 500
           RTTPSPDWWRRVLVLA  YRPS+Q PTAGAVFS+EMICEATIDRIVELLKLTNSEINCWQ
Sbjct: 443 RTTPSPDWWRRVLVLASPYRPSAQGPTAGAVFSTEMICEATIDRIVELLKLTNSEINCWQ 502

Query: 501 DWLVFSDIFYFLVKSGCIDFVDFVDKLVSRLTEGDQHILKTNHVTWLLAQIIRIELVMNA 560
           +WLVFSDIFYFL+KSGCI+FVDFVDKLVSRL EGD H LKTNHVTWLLAQIIRIELVM A
Sbjct: 503 EWLVFSDIFYFLMKSGCINFVDFVDKLVSRLAEGDHHTLKTNHVTWLLAQIIRIELVMTA 562

Query: 561 LNLDSRKVETTRKILSFHREDRSSDPNNPQSILLEFVSSCQNLRIWSLNTTAREYLNSEQ 620
           LN DSRKVETTRK+LSFHREDRSSDPN+PQSILL+FVSSCQNLRIWSLNT+AREYLN+EQ
Sbjct: 563 LNSDSRKVETTRKVLSFHREDRSSDPNSPQSILLDFVSSCQNLRIWSLNTSAREYLNNEQ 622

Query: 621 LQKGKQIDEWWRQASKGDRMMDYMNMDERSIGMFWVVTYTMAQPACETVMNWLTSAGVID 680
           LQKGKQIDEWWRQASKGDRMMDYMNMDERSIGMFWVVTYTMAQPA ETVMNWLTSAGVID
Sbjct: 623 LQKGKQIDEWWRQASKGDRMMDYMNMDERSIGMFWVVTYTMAQPALETVMNWLTSAGVID 682

Query: 681 LLPGPNLQSAE 691
           L P  NLQ  E
Sbjct: 683 LAPATNLQPPE 693