Miyakogusa Predicted Gene

Lj0g3v0124439.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0124439.1 tr|G7ZY41|G7ZY41_MEDTR Vascular protein
OS=Medicago truncatula GN=MTR_066s1023 PE=4 SV=1,88.14,0,
,NODE_23204_length_1104_cov_134.116852.path2.1
         (253 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g079820.1 | transducin/WD40 repeat protein | HC | chr8:342...   488   e-138
Medtr5g017810.1 | transducin/WD-like repeat-protein | HC | chr5:...   396   e-110

>Medtr8g079820.1 | transducin/WD40 repeat protein | HC |
           chr8:34235279-34253775 | 20130731
          Length = 1616

 Score =  488 bits (1255), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 226/253 (89%), Positives = 242/253 (95%)

Query: 1   MEGHAKISPISRVPLITVLDTKHHLNDFPVCEPFHLELNFFNKANRVLHYPARAFYVDGL 60
           MEGH KISPISR+PLITVLDTKHHL DFPVCEP+HLELNFFNKANRVLHYP+RAFY+DGL
Sbjct: 421 MEGHMKISPISRLPLITVLDTKHHLKDFPVCEPYHLELNFFNKANRVLHYPSRAFYMDGL 480

Query: 61  NLMAHNLSSGSDSIYRKLYNSIPGSVEYRAKYLVYSKKQRLFLVVYEFSGATNEVVFYWE 120
           NLMAH+LSSGSD IYRKLYNSIPG+VEYRAKYL++SKKQRLFLVVYEFSG+TNEVV YWE
Sbjct: 481 NLMAHSLSSGSDIIYRKLYNSIPGNVEYRAKYLIHSKKQRLFLVVYEFSGSTNEVVLYWE 540

Query: 121 NTDAQTANSKSSTVKGRDAAFIGSNENQFAILDDDRTGLAVYTLPGGASKEAKDNDKVFE 180
           NTD QT NSKSSTVKGRDAAFIGSNENQFAILD+DRTGLA+YTLPGG S+E KDNDKVFE
Sbjct: 541 NTDVQTGNSKSSTVKGRDAAFIGSNENQFAILDEDRTGLALYTLPGGTSQEVKDNDKVFE 600

Query: 181 ENQPAETSVGSIRGPTPFMFETEVDRIFSTPIDSTLMFASHGNQIGQVKLIQGYRLSTST 240
           ENQP ET+VGSIRGPTPFMFETEVDRIFSTP+DSTLMFASHGNQIG VKLI+GYRLSTST
Sbjct: 601 ENQPTETNVGSIRGPTPFMFETEVDRIFSTPLDSTLMFASHGNQIGLVKLIEGYRLSTST 660

Query: 241 ANGHYISTNSEGK 253
           ANGHYIST S+GK
Sbjct: 661 ANGHYISTKSDGK 673


>Medtr5g017810.1 | transducin/WD-like repeat-protein | HC |
           chr5:6583166-6575605 | 20130731
          Length = 740

 Score =  396 bits (1017), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 196/257 (76%), Positives = 216/257 (84%), Gaps = 4/257 (1%)

Query: 1   MEGHAKISPISRVPLITVLDTKHHLNDFPVCEPFHLELNFFNKANRVLHYPARAFYVDGL 60
           MEGH K +PISR+PLI VLDTKH L D PV +PFHLELNFFNK NRVLHYP RAFYVDG 
Sbjct: 421 MEGHTKSAPISRLPLIAVLDTKHRLKDIPVAQPFHLELNFFNKENRVLHYPVRAFYVDGP 480

Query: 61  NLMAHNLSSGSDSIYRKLYNSIPGSVEYRAKYLVYSKKQRLFLVVYEFSGATNEVVFYWE 120
           +LMA+NLSSG ++ YRKLYNSIPG VEY+A YL+YSKKQ LFLV +EFSG TNEVV Y E
Sbjct: 481 DLMAYNLSSGLENTYRKLYNSIPGHVEYQANYLIYSKKQHLFLVAFEFSGITNEVVVYRE 540

Query: 121 NTDAQTANSKSSTVKGRDAAFIGSNENQFAILDDDRTGLAVYTLPGGASKEAKDNDKVFE 180
           NT+  T NSKSS VKGRDAAFIG NENQFAILD+D+TGLAVY LPGG S E KD +K FE
Sbjct: 541 NTEVDTVNSKSSNVKGRDAAFIGPNENQFAILDEDKTGLAVYILPGGPSHEPKDIEKAFE 600

Query: 181 ENQPAETSVGSIRGPTPFMFETEVDRIFSTPIDSTLMFASHGNQIGQVKLIQGYRL---- 236
           ENQ  ETS  SI+GPTPFMFETEVDRIFSTP+DSTLMFASHG+QIG VKLIQGYRL    
Sbjct: 601 ENQATETSDNSIKGPTPFMFETEVDRIFSTPLDSTLMFASHGSQIGLVKLIQGYRLSTST 660

Query: 237 STSTANGHYISTNSEGK 253
           STST++GHYI+T  EGK
Sbjct: 661 STSTSSGHYITTKGEGK 677