Miyakogusa Predicted Gene

Lj0g3v0123959.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0123959.1 tr|B6UF44|B6UF44_MAIZE DNA binding protein OS=Zea
mays PE=4 SV=1,56.52,2e-18,no description,Helix-loop-helix domain;
coiled-coil,NULL; seg,NULL; HLH,Helix-loop-helix domain;
HLH,CUFF.7444.1
         (92 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g438070.1 | transcription factor | HC | chr3:13020251-1302...   143   4e-35
Medtr5g039180.1 | transcription factor | HC | chr5:17227525-1722...   115   1e-26
Medtr6g011670.1 | transcription factor | HC | chr6:3400982-33979...   112   6e-26
Medtr7g010120.1 | transcription factor | HC | chr7:2400786-23982...   111   1e-25
Medtr7g059260.1 | helix loop helix DNA-binding domain protein | ...    56   6e-09

>Medtr3g438070.1 | transcription factor | HC |
          chr3:13020251-13021792 | 20130731
          Length = 92

 Score =  143 bits (360), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 72/77 (93%), Positives = 75/77 (97%)

Query: 16 NITDDQIHDLVSKLQQLLPEIRERRSDKVSASKVLQETCNYIRSLHREVDDLSERLSELL 75
          NITDDQIHDLVSKLQQLLPEIR R SDKVSAS+VLQETCNYIR+L+REVDDLSERLSELL
Sbjct: 16 NITDDQIHDLVSKLQQLLPEIRNRSSDKVSASRVLQETCNYIRNLNREVDDLSERLSELL 75

Query: 76 ATTDTAQAAIIRNLLMQ 92
          ATTDTAQAAIIRNLLMQ
Sbjct: 76 ATTDTAQAAIIRNLLMQ 92


>Medtr5g039180.1 | transcription factor | HC |
          chr5:17227525-17226057 | 20130731
          Length = 93

 Score =  115 bits (287), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 58/77 (75%), Positives = 70/77 (90%), Gaps = 2/77 (2%)

Query: 17 ITDDQIHDLVSKLQQLLPEIRERRSDKVSASKVLQETCNYIRSLHREVDDLSERLSELLA 76
          ITD QI DL+SKLQQL+PE+   RS+KVSA+KVLQETCNYI++LHREVDDLS+RLS+LLA
Sbjct: 17 ITDAQITDLISKLQQLIPELHASRSNKVSATKVLQETCNYIKNLHREVDDLSDRLSQLLA 76

Query: 77 TTD--TAQAAIIRNLLM 91
          +TD  +AQAAIIR+LLM
Sbjct: 77 STDSNSAQAAIIRSLLM 93


>Medtr6g011670.1 | transcription factor | HC |
          chr6:3400982-3397982 | 20130731
          Length = 92

 Score =  112 bits (281), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 59/78 (75%), Positives = 69/78 (88%), Gaps = 2/78 (2%)

Query: 17 ITDDQIHDLVSKLQQLLPEIRERRSDKVSASKVLQETCNYIRSLHREVDDLSERLSELLA 76
          I+DDQI +LVSKL+QL+PEIR RRSDKVSASKVLQETCNYIR+LHREVDDLSERLS+LL 
Sbjct: 15 ISDDQIIELVSKLRQLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLV 74

Query: 77 T--TDTAQAAIIRNLLMQ 92
          T   D+ +A IIR+L+ Q
Sbjct: 75 TIDADSPEANIIRSLINQ 92


>Medtr7g010120.1 | transcription factor | HC |
          chr7:2400786-2398281 | 20130731
          Length = 93

 Score =  111 bits (278), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 59/78 (75%), Positives = 69/78 (88%), Gaps = 2/78 (2%)

Query: 17 ITDDQIHDLVSKLQQLLPEIRERRSDKVSASKVLQETCNYIRSLHREVDDLSERLSELLA 76
          I+DDQI DLV KL+QL+PEIR RRSDKV ASKVLQETCNYIR+L REVDDLS RLS+LLA
Sbjct: 16 ISDDQIIDLVCKLRQLVPEIRNRRSDKVPASKVLQETCNYIRNLQREVDDLSLRLSQLLA 75

Query: 77 T--TDTAQAAIIRNLLMQ 92
          T  +D+A+A+IIR+LL Q
Sbjct: 76 TIDSDSAEASIIRSLLNQ 93


>Medtr7g059260.1 | helix loop helix DNA-binding domain protein |
          HC | chr7:21404536-21402249 | 20130731
          Length = 89

 Score = 56.2 bits (134), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 34/63 (53%), Positives = 51/63 (80%)

Query: 17 ITDDQIHDLVSKLQQLLPEIRERRSDKVSASKVLQETCNYIRSLHREVDDLSERLSELLA 76
          + + QI+DLVS+LQ LLP++ +R + + SASK+LQET N+IR L +EV+DLSERL++L+ 
Sbjct: 12 LKEKQINDLVSRLQLLLPQLNQRNNSRQSASKILQETLNHIRRLQKEVEDLSERLTQLMD 71

Query: 77 TTD 79
          + D
Sbjct: 72 SVD 74