Miyakogusa Predicted Gene

Lj0g3v0123729.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0123729.1 Non Characterized Hit- tr|C0P5F8|C0P5F8_MAIZE
Uncharacterized protein OS=Zea mays PE=2
SV=1,46.02,5e-19,Translational machinery components,NULL; STRUCTURAL
CONSTITUENT OF RIBOSOME,NULL; 39S RIBOSOMAL PROT,CUFF.7429.1
         (187 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g012540.1 | structural constituent of ribosome protein | H...   366   e-102
Medtr4g032660.1 | 50S ribosomal protein L18 family protein | HC ...   116   2e-26
Medtr5g006310.1 | structural constituent of ribosome protein | H...   101   3e-22
Medtr1g114200.1 | 50S ribosomal L18-like protein | HC | chr1:515...    61   6e-10

>Medtr3g012540.1 | structural constituent of ribosome protein | HC |
           chr3:3539643-3535836 | 20130731
          Length = 187

 Score =  366 bits (939), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 173/187 (92%), Positives = 181/187 (96%)

Query: 1   MLKQAIGRICRTSVYTCEVNGVLPWNYVPSCCFHSGQAHMAPRSFFGVEDFLDDDNSRPY 60
           MLKQAIGRICRT+ Y CE N VLPW+YV SCCFH+GQAHMAPRSFFGVEDF+DDDNSRPY
Sbjct: 1   MLKQAIGRICRTNAYACEGNKVLPWSYVSSCCFHNGQAHMAPRSFFGVEDFVDDDNSRPY 60

Query: 61  TYQKGKKSKNPNKHVSFKQRTVAYMEPFTLDVFISKRFVSASVTHRVTSKQVAVAGTNSK 120
           TYQKGKKSKNPNKH+SFKQRTVAYMEPFTLDVFISKRFVSAS+THRVTSKQVAVAGTNSK
Sbjct: 61  TYQKGKKSKNPNKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSK 120

Query: 121 DIKAVLRSRSDIPACIAIGRILSERAREADVYTASYTPRDRDKFEGKIRAVVQSLIDNGI 180
           DIKAVLRSRSDIPACIAIGRIL+ERA EADVYTASYTPRDRDKFEGKIRAVVQSLIDNGI
Sbjct: 121 DIKAVLRSRSDIPACIAIGRILAERAMEADVYTASYTPRDRDKFEGKIRAVVQSLIDNGI 180

Query: 181 DIKVYLD 187
           D+KVYLD
Sbjct: 181 DLKVYLD 187


>Medtr4g032660.1 | 50S ribosomal protein L18 family protein | HC |
           chr4:11256027-11260142 | 20130731
          Length = 199

 Score =  116 bits (290), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 55/117 (47%), Positives = 83/117 (70%), Gaps = 1/117 (0%)

Query: 64  KGKKSKNPNKHVSFKQRTVAYMEPFTLDVFISKRFVSASVTHRVTSKQVAVAGTNSKDIK 123
           +G+  K P++  S+K+RT  YM PF LD+F SK+FV A VTHR TSK + VA TN+KD++
Sbjct: 81  RGEAEKKPSRK-SWKRRTDMYMRPFLLDIFFSKKFVHAKVTHRGTSKVICVATTNAKDLR 139

Query: 124 AVLRSRSDIPACIAIGRILSERAREADVYTASYTPRDRDKFEGKIRAVVQSLIDNGI 180
             L S  D  AC  IGR+++ER++EADVY  +Y PR +++ EG++  ++ ++ +NGI
Sbjct: 140 NSLPSLIDPEACRVIGRLIAERSKEADVYAMAYEPRKKERIEGRLGIIIDTVKENGI 196


>Medtr5g006310.1 | structural constituent of ribosome protein | HC |
           chr5:854406-856255 | 20130731
          Length = 404

 Score =  101 bits (252), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 51/111 (45%), Positives = 75/111 (67%)

Query: 76  SFKQRTVAYMEPFTLDVFISKRFVSASVTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPAC 135
           +F Q T  Y EPF LD++ISK  V A + HRVTSK V VA + SKD+K  L S  +   C
Sbjct: 232 TFNQLTGPYHEPFCLDIYISKASVRACIVHRVTSKVVVVAHSISKDLKFDLTSTKNKTTC 291

Query: 136 IAIGRILSERAREADVYTASYTPRDRDKFEGKIRAVVQSLIDNGIDIKVYL 186
            A+G+IL++RA   D++   YTPR  ++ EGK++ V+ S+ID+GI++K+ +
Sbjct: 292 AAVGKILAQRALADDIHDIIYTPRKGERVEGKLQIVLNSIIDSGINVKLKI 342


>Medtr1g114200.1 | 50S ribosomal L18-like protein | HC |
           chr1:51533429-51531111 | 20130731
          Length = 114

 Score = 61.2 bits (147), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 56/99 (56%)

Query: 84  YMEPFTLDVFISKRFVSASVTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACIAIGRILS 143
           Y++P+ L +  + ++VSA V H  T+   + A +  K +++ L +  D+ A   IG++L+
Sbjct: 15  YLKPYVLKMHFTNKYVSAQVIHTPTATVASSASSQEKALRSSLETTRDVAAAAKIGKLLA 74

Query: 144 ERAREADVYTASYTPRDRDKFEGKIRAVVQSLIDNGIDI 182
           ER    D+   S   +   ++ GK++AV+ SL + G+ +
Sbjct: 75  ERLSLKDIPAVSVHLKREQRYHGKVKAVIDSLREAGVRL 113