Miyakogusa Predicted Gene

Lj0g3v0123219.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0123219.1 Non Characterized Hit- tr|A5BE80|A5BE80_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,54.17,3e-18,seg,NULL; LEA_6,Late embryogenesis abundant protein,
LEA-18,CUFF.7382.1
         (93 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g081540.1 | late embryogenesis abundant protein, group 6 |...    95   1e-20
Medtr4g095330.1 | late embryogenesis abundant protein, group 6 |...    92   1e-19

>Medtr8g081540.1 | late embryogenesis abundant protein, group 6 |
          HC | chr8:35175866-35175591 | 20130731
          Length = 91

 Score = 95.1 bits (235), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 48/64 (75%), Positives = 54/64 (84%), Gaps = 2/64 (3%)

Query: 1  MEKETKAQSESGKGGASIEGLPFEDSPYVQYKDLEDYKRQGYGTEGHQEPKPGRGAGATE 60
          ++ ETK   ESGKG  SIEGLPFEDSPY++ KDLEDYK QGYGT+GHQ+PKPGRG GATE
Sbjct: 6  VKDETKGARESGKG--SIEGLPFEDSPYLKCKDLEDYKCQGYGTQGHQQPKPGRGPGATE 63

Query: 61 APTL 64
          A TL
Sbjct: 64 AATL 67


>Medtr4g095330.1 | late embryogenesis abundant protein, group 6 |
          HC | chr4:39729859-39729428 | 20130731
          Length = 91

 Score = 92.0 bits (227), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 47/85 (55%), Positives = 58/85 (68%), Gaps = 8/85 (9%)

Query: 9  SESGKGGASIEGLPFEDSPYVQYKDLEDYKRQGYGTEGHQEPKPGRGAGATEAPTLXXXX 68
          +E+ KG  +IEGLP +DSPY++Y+DLEDYKRQGYGT+GHQ+P+PGRGAGATEAPTL    
Sbjct: 15 NEASKG--NIEGLPLQDSPYLKYEDLEDYKRQGYGTQGHQQPQPGRGAGATEAPTLSGAN 72

Query: 69 XXXXXXXXXXXXPTGTGATNRQGVP 93
                           A N +GVP
Sbjct: 73 VSSEAKF------NAANAVNSKGVP 91