Miyakogusa Predicted Gene

Lj0g3v0122869.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0122869.1 Non Characterized Hit- tr|G3AFJ7|G3AFJ7_SPAPN
Putative uncharacterized protein OS=Spathaspora
passal,30.25,0.0000004,coiled-coil,NULL; Elongin_A,RNA polymerase II
transcription factor SIII, subunit A;
ELONGIN-A-RELATE,NODE_7552_length_995_cov_78.212059.path1.1
         (222 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g048940.1 | RNA polymerase II transcription factor SIII (e...   314   5e-86
Medtr3g048940.6 | RNA polymerase II transcription factor SIII (e...   314   5e-86
Medtr3g048940.2 | RNA polymerase II transcription factor SIII (e...   314   5e-86
Medtr3g048940.4 | RNA polymerase II transcription factor SIII (e...   314   5e-86
Medtr3g048940.5 | RNA polymerase II transcription factor SIII (e...   314   5e-86
Medtr3g048940.3 | RNA polymerase II transcription factor SIII (e...   314   5e-86
Medtr5g085090.1 | RNA polymerase II transcription factor SIII (e...   275   3e-74
Medtr8g009140.1 | RNA polymerase II transcription factor SIII (e...   262   2e-70
Medtr8g007200.1 | RNA polymerase II transcription factor SIII (e...   238   3e-63
Medtr8g007210.1 | RNA polymerase II transcription factor SIII (e...   230   6e-61
Medtr8g007225.1 | RNA polymerase II transcription factor SIII (e...   187   8e-48
Medtr3g061710.1 | hypothetical protein | HC | chr3:24620657-2461...   119   3e-27

>Medtr3g048940.1 | RNA polymerase II transcription factor SIII
           (elongin) subunit A | HC | chr3:18181628-18178515 |
           20130731
          Length = 232

 Score =  314 bits (804), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 146/192 (76%), Positives = 168/192 (87%), Gaps = 2/192 (1%)

Query: 1   MMRRDQVPVRKLPSLVDLCVEKVIDNLRYLGNVGSVDHHLLERILPHCTLEQLMHVEKAS 60
           MMRR Q+  RK PSLVDLCV+  IDNLRYLGNVG VDHHLLERILPHCTL+QL H+EKAS
Sbjct: 1   MMRRGQISARKTPSLVDLCVQTAIDNLRYLGNVGPVDHHLLERILPHCTLDQLTHIEKAS 60

Query: 61  VGCDLSPVTDKLWKKFFEKQFGTHSTNEVIKRMREKKVSFKWMQLYEAKVKEIAEAENEA 120
            G DLSPVTDKLWKKFFEKQFG   TNE+I+RM EK+VSF+W+QLYEAK KE+A+AENEA
Sbjct: 61  EGMDLSPVTDKLWKKFFEKQFGISCTNEIIRRMTEKRVSFRWLQLYEAKGKEVAQAENEA 120

Query: 121 VARIKQRYQKEDARKQSRQVQLCTKTPPSSKKRFWGDN--GYNVSNLKSNIMKKSRIELL 178
           + R+++RY+  DA+KQSRQV+ CTK PPSSK+RFWGDN  GYNVSN+KSNIMKKS+IE L
Sbjct: 121 IDRLRERYKNADAKKQSRQVKTCTKLPPSSKRRFWGDNGPGYNVSNVKSNIMKKSKIEFL 180

Query: 179 KSHEVKNLAAMK 190
           KS EVKN+AAMK
Sbjct: 181 KSREVKNIAAMK 192


>Medtr3g048940.6 | RNA polymerase II transcription factor SIII
           (elongin) subunit A | HC | chr3:18181628-18178515 |
           20130731
          Length = 232

 Score =  314 bits (804), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 146/192 (76%), Positives = 168/192 (87%), Gaps = 2/192 (1%)

Query: 1   MMRRDQVPVRKLPSLVDLCVEKVIDNLRYLGNVGSVDHHLLERILPHCTLEQLMHVEKAS 60
           MMRR Q+  RK PSLVDLCV+  IDNLRYLGNVG VDHHLLERILPHCTL+QL H+EKAS
Sbjct: 1   MMRRGQISARKTPSLVDLCVQTAIDNLRYLGNVGPVDHHLLERILPHCTLDQLTHIEKAS 60

Query: 61  VGCDLSPVTDKLWKKFFEKQFGTHSTNEVIKRMREKKVSFKWMQLYEAKVKEIAEAENEA 120
            G DLSPVTDKLWKKFFEKQFG   TNE+I+RM EK+VSF+W+QLYEAK KE+A+AENEA
Sbjct: 61  EGMDLSPVTDKLWKKFFEKQFGISCTNEIIRRMTEKRVSFRWLQLYEAKGKEVAQAENEA 120

Query: 121 VARIKQRYQKEDARKQSRQVQLCTKTPPSSKKRFWGDN--GYNVSNLKSNIMKKSRIELL 178
           + R+++RY+  DA+KQSRQV+ CTK PPSSK+RFWGDN  GYNVSN+KSNIMKKS+IE L
Sbjct: 121 IDRLRERYKNADAKKQSRQVKTCTKLPPSSKRRFWGDNGPGYNVSNVKSNIMKKSKIEFL 180

Query: 179 KSHEVKNLAAMK 190
           KS EVKN+AAMK
Sbjct: 181 KSREVKNIAAMK 192


>Medtr3g048940.2 | RNA polymerase II transcription factor SIII
           (elongin) subunit A | HC | chr3:18181583-18178515 |
           20130731
          Length = 232

 Score =  314 bits (804), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 146/192 (76%), Positives = 168/192 (87%), Gaps = 2/192 (1%)

Query: 1   MMRRDQVPVRKLPSLVDLCVEKVIDNLRYLGNVGSVDHHLLERILPHCTLEQLMHVEKAS 60
           MMRR Q+  RK PSLVDLCV+  IDNLRYLGNVG VDHHLLERILPHCTL+QL H+EKAS
Sbjct: 1   MMRRGQISARKTPSLVDLCVQTAIDNLRYLGNVGPVDHHLLERILPHCTLDQLTHIEKAS 60

Query: 61  VGCDLSPVTDKLWKKFFEKQFGTHSTNEVIKRMREKKVSFKWMQLYEAKVKEIAEAENEA 120
            G DLSPVTDKLWKKFFEKQFG   TNE+I+RM EK+VSF+W+QLYEAK KE+A+AENEA
Sbjct: 61  EGMDLSPVTDKLWKKFFEKQFGISCTNEIIRRMTEKRVSFRWLQLYEAKGKEVAQAENEA 120

Query: 121 VARIKQRYQKEDARKQSRQVQLCTKTPPSSKKRFWGDN--GYNVSNLKSNIMKKSRIELL 178
           + R+++RY+  DA+KQSRQV+ CTK PPSSK+RFWGDN  GYNVSN+KSNIMKKS+IE L
Sbjct: 121 IDRLRERYKNADAKKQSRQVKTCTKLPPSSKRRFWGDNGPGYNVSNVKSNIMKKSKIEFL 180

Query: 179 KSHEVKNLAAMK 190
           KS EVKN+AAMK
Sbjct: 181 KSREVKNIAAMK 192


>Medtr3g048940.4 | RNA polymerase II transcription factor SIII
           (elongin) subunit A | HC | chr3:18181628-18178515 |
           20130731
          Length = 232

 Score =  314 bits (804), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 146/192 (76%), Positives = 168/192 (87%), Gaps = 2/192 (1%)

Query: 1   MMRRDQVPVRKLPSLVDLCVEKVIDNLRYLGNVGSVDHHLLERILPHCTLEQLMHVEKAS 60
           MMRR Q+  RK PSLVDLCV+  IDNLRYLGNVG VDHHLLERILPHCTL+QL H+EKAS
Sbjct: 1   MMRRGQISARKTPSLVDLCVQTAIDNLRYLGNVGPVDHHLLERILPHCTLDQLTHIEKAS 60

Query: 61  VGCDLSPVTDKLWKKFFEKQFGTHSTNEVIKRMREKKVSFKWMQLYEAKVKEIAEAENEA 120
            G DLSPVTDKLWKKFFEKQFG   TNE+I+RM EK+VSF+W+QLYEAK KE+A+AENEA
Sbjct: 61  EGMDLSPVTDKLWKKFFEKQFGISCTNEIIRRMTEKRVSFRWLQLYEAKGKEVAQAENEA 120

Query: 121 VARIKQRYQKEDARKQSRQVQLCTKTPPSSKKRFWGDN--GYNVSNLKSNIMKKSRIELL 178
           + R+++RY+  DA+KQSRQV+ CTK PPSSK+RFWGDN  GYNVSN+KSNIMKKS+IE L
Sbjct: 121 IDRLRERYKNADAKKQSRQVKTCTKLPPSSKRRFWGDNGPGYNVSNVKSNIMKKSKIEFL 180

Query: 179 KSHEVKNLAAMK 190
           KS EVKN+AAMK
Sbjct: 181 KSREVKNIAAMK 192


>Medtr3g048940.5 | RNA polymerase II transcription factor SIII
           (elongin) subunit A | HC | chr3:18181628-18178515 |
           20130731
          Length = 232

 Score =  314 bits (804), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 146/192 (76%), Positives = 168/192 (87%), Gaps = 2/192 (1%)

Query: 1   MMRRDQVPVRKLPSLVDLCVEKVIDNLRYLGNVGSVDHHLLERILPHCTLEQLMHVEKAS 60
           MMRR Q+  RK PSLVDLCV+  IDNLRYLGNVG VDHHLLERILPHCTL+QL H+EKAS
Sbjct: 1   MMRRGQISARKTPSLVDLCVQTAIDNLRYLGNVGPVDHHLLERILPHCTLDQLTHIEKAS 60

Query: 61  VGCDLSPVTDKLWKKFFEKQFGTHSTNEVIKRMREKKVSFKWMQLYEAKVKEIAEAENEA 120
            G DLSPVTDKLWKKFFEKQFG   TNE+I+RM EK+VSF+W+QLYEAK KE+A+AENEA
Sbjct: 61  EGMDLSPVTDKLWKKFFEKQFGISCTNEIIRRMTEKRVSFRWLQLYEAKGKEVAQAENEA 120

Query: 121 VARIKQRYQKEDARKQSRQVQLCTKTPPSSKKRFWGDN--GYNVSNLKSNIMKKSRIELL 178
           + R+++RY+  DA+KQSRQV+ CTK PPSSK+RFWGDN  GYNVSN+KSNIMKKS+IE L
Sbjct: 121 IDRLRERYKNADAKKQSRQVKTCTKLPPSSKRRFWGDNGPGYNVSNVKSNIMKKSKIEFL 180

Query: 179 KSHEVKNLAAMK 190
           KS EVKN+AAMK
Sbjct: 181 KSREVKNIAAMK 192


>Medtr3g048940.3 | RNA polymerase II transcription factor SIII
           (elongin) subunit A | HC | chr3:18180923-18178515 |
           20130731
          Length = 232

 Score =  314 bits (804), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 146/192 (76%), Positives = 168/192 (87%), Gaps = 2/192 (1%)

Query: 1   MMRRDQVPVRKLPSLVDLCVEKVIDNLRYLGNVGSVDHHLLERILPHCTLEQLMHVEKAS 60
           MMRR Q+  RK PSLVDLCV+  IDNLRYLGNVG VDHHLLERILPHCTL+QL H+EKAS
Sbjct: 1   MMRRGQISARKTPSLVDLCVQTAIDNLRYLGNVGPVDHHLLERILPHCTLDQLTHIEKAS 60

Query: 61  VGCDLSPVTDKLWKKFFEKQFGTHSTNEVIKRMREKKVSFKWMQLYEAKVKEIAEAENEA 120
            G DLSPVTDKLWKKFFEKQFG   TNE+I+RM EK+VSF+W+QLYEAK KE+A+AENEA
Sbjct: 61  EGMDLSPVTDKLWKKFFEKQFGISCTNEIIRRMTEKRVSFRWLQLYEAKGKEVAQAENEA 120

Query: 121 VARIKQRYQKEDARKQSRQVQLCTKTPPSSKKRFWGDN--GYNVSNLKSNIMKKSRIELL 178
           + R+++RY+  DA+KQSRQV+ CTK PPSSK+RFWGDN  GYNVSN+KSNIMKKS+IE L
Sbjct: 121 IDRLRERYKNADAKKQSRQVKTCTKLPPSSKRRFWGDNGPGYNVSNVKSNIMKKSKIEFL 180

Query: 179 KSHEVKNLAAMK 190
           KS EVKN+AAMK
Sbjct: 181 KSREVKNIAAMK 192


>Medtr5g085090.1 | RNA polymerase II transcription factor SIII
           (elongin) subunit A | HC | chr5:36717299-36718012 |
           20130731
          Length = 237

 Score =  275 bits (702), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 133/212 (62%), Positives = 164/212 (77%), Gaps = 17/212 (8%)

Query: 1   MMRRDQVPVRKLPSL----------------VDLCVEKVIDNLRYLGNVGSVDHHLLERI 44
           MMRRD++  RK PSL                VDLCVEK IDN++YLG+V  VDHH+LERI
Sbjct: 1   MMRRDEISARKKPSLFQRNPVMMKRKDQTSLVDLCVEKAIDNVKYLGDVSHVDHHMLERI 60

Query: 45  LPHCTLEQLMHVEKASVGCDLSPVTDKLWKKFFEKQFGTHSTNEVIKRMREKKVSFKWMQ 104
           LPHCTL+QLMH+EKAS G DLSP+TDKLWKKFFEKQFG + TNEV+K+M+EK+VSF W+Q
Sbjct: 61  LPHCTLDQLMHIEKASEGMDLSPITDKLWKKFFEKQFGINCTNEVVKKMKEKRVSFTWLQ 120

Query: 105 LYEAKVKEIAEAENEAVARIKQRYQKEDARKQSRQVQLCTKTPPSSKKRFWGDNGYNVSN 164
           LYEAKVK++A+AENEAV R+ QRY++EDARKQSR+++ CT  PP +K+RF GDNG   + 
Sbjct: 121 LYEAKVKKMAQAENEAVDRLAQRYKEEDARKQSRKIKTCTIVPP-NKRRFSGDNGPGSNV 179

Query: 165 LKSNIMKKSRIELLKSHEVKNLAAMKNKSIQR 196
             SNIMKKS+ + L S EVKN+ AMKN   Q+
Sbjct: 180 KSSNIMKKSKKDFLNSFEVKNITAMKNNCNQK 211


>Medtr8g009140.1 | RNA polymerase II transcription factor SIII
           (elongin) subunit A | HC | chr8:2041400-2040729 |
           20130731
          Length = 223

 Score =  262 bits (670), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 130/215 (60%), Positives = 162/215 (75%), Gaps = 23/215 (10%)

Query: 2   MRRDQVPVRKLPS--------------------LVDLCVEKVIDNLRYLGNVGSVDHHLL 41
           MRRD+V  RK PS                    LVDLCVEK IDN++YLG+V  VDH +L
Sbjct: 1   MRRDEVSARKKPSSSVLLFQRNPVMMKRKDQTPLVDLCVEKGIDNVKYLGDVSHVDHDML 60

Query: 42  ERILPHCTLEQLMHVEKASVGCDLSPVTDKLWKKFFEKQFGTHSTNEVIKRMREKKVSFK 101
           ERILPHCTL+QLMH+EK++ G DLSP+TD+LW+KFFEKQFG + TNEV+K+M+EK+VSF 
Sbjct: 61  ERILPHCTLDQLMHIEKSTQGMDLSPITDQLWRKFFEKQFGINCTNEVVKKMKEKRVSFT 120

Query: 102 WMQLYEAKVKEIAEAENEAVARIKQRYQKEDARKQSRQVQLCTKTPPSSKKRFWGDN--G 159
           W+QLYEAKVK +A+ ENEAV R+ QRY++EDARKQSR+++ CTK PP S++RF GDN  G
Sbjct: 121 WLQLYEAKVKRVAQTENEAVDRLAQRYKEEDARKQSRKIKTCTKLPP-SERRFCGDNGSG 179

Query: 160 YNVSNLKSNIMKKSRIELLKSHEVKNLAAMKNKSI 194
           YN+S   SNIMKKS+ + L S EVKN  AMK + I
Sbjct: 180 YNLSVKSSNIMKKSKKDFLNSLEVKNNTAMKRRGI 214


>Medtr8g007200.1 | RNA polymerase II transcription factor SIII
           (elongin) subunit A | HC | chr8:1352254-1352915 |
           20130731
          Length = 208

 Score =  238 bits (607), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 123/216 (56%), Positives = 150/216 (69%), Gaps = 39/216 (18%)

Query: 1   MMRRDQVPVRKLPS--------------------LVDLCVEKVIDNLRYLGNVGSVDHHL 40
           MMRRD++  R+ PS                    LVDLCVEK IDN++YLG+V  VDHH+
Sbjct: 1   MMRRDEISARRKPSSSVLLFQRNPVMMKRKDQTPLVDLCVEKAIDNVKYLGDVSHVDHHM 60

Query: 41  LERILPHCTLEQLMHVEKASVGCDLSPVTDKLWKKFFEKQFGTHSTNEVIKRMREKKVSF 100
           LERILPHCTLEQLMH+EK + G DLSP+TD+LWKKFFEKQFG + TNE            
Sbjct: 61  LERILPHCTLEQLMHIEKTNKGMDLSPITDQLWKKFFEKQFGINCTNE------------ 108

Query: 101 KWMQLYEAKVKEIAEAENEAVARIKQRYQKEDARKQSRQVQLCTKTPPSSKKRFWGDN-- 158
               LYEAKVK++A AENEAV R+ +RY++EDARKQSRQ++ CTK PP S++RF GDN  
Sbjct: 109 ----LYEAKVKKMARAENEAVDRLTKRYKEEDARKQSRQIKTCTKLPP-SERRFCGDNGS 163

Query: 159 GYNVSNLKSNIMKKSRIELLKSHEVKNLAAMKNKSI 194
           GYN+S   SNIMKKS+ + L S EVKN+ AMK + I
Sbjct: 164 GYNLSVKSSNIMKKSKKDFLNSFEVKNITAMKRRGI 199


>Medtr8g007210.1 | RNA polymerase II transcription factor SIII
           (elongin) subunit A | HC | chr8:1357453-1357896 |
           20130731
          Length = 147

 Score =  230 bits (587), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 107/154 (69%), Positives = 131/154 (85%), Gaps = 7/154 (4%)

Query: 1   MMRRDQVPVRKLPSLVDLCVEKVIDNLRYLGNVGSVDHHLLERILPHCTLEQLMHVEKAS 60
           M R+DQ        LVDLCVEK IDN++YLG+V  VDHH+LERILPHCTLEQLMH+EK++
Sbjct: 1   MKRKDQT------CLVDLCVEKAIDNVKYLGDVSHVDHHMLERILPHCTLEQLMHIEKST 54

Query: 61  VGCDLSPVTDKLWKKFFEKQFGTHSTNEVIKRMREKKVSFKWMQLYEAKVKEIAEAENEA 120
            G DLSP+TDKLWKKFFEKQFG + TNEV+K+M+EK+VSF W+QLYEAKVK++A+ ENEA
Sbjct: 55  QGMDLSPITDKLWKKFFEKQFGINCTNEVVKKMKEKRVSFTWLQLYEAKVKKVAQTENEA 114

Query: 121 VARIKQRYQKEDARKQSRQVQLCTKTPPSSKKRF 154
           V R+ QRY++EDARKQSRQ++ CTK PP SK+RF
Sbjct: 115 VDRLAQRYKEEDARKQSRQIKTCTKLPP-SKRRF 147


>Medtr8g007225.1 | RNA polymerase II transcription factor SIII
           (elongin) subunit A | HC | chr8:1364298-1364743 |
           20130731
          Length = 136

 Score =  187 bits (474), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 89/138 (64%), Positives = 108/138 (78%), Gaps = 17/138 (12%)

Query: 22  KVIDNLRYLGNVGSVDHHLLERILPHCTLEQLMHVEKASVGCDLSPVTDKLWKKFFEKQF 81
           K IDN++YLG+V  VDHH+LERILPHCTLEQLMH+EK++ G DLSP+TD+LWKKFFEKQF
Sbjct: 11  KAIDNVKYLGDVSHVDHHMLERILPHCTLEQLMHIEKSTQGMDLSPITDQLWKKFFEKQF 70

Query: 82  GTHSTNEVIKRMREKKVSFKWMQLYEAKVKEIAEAENEAVARIKQRYQKEDARKQSRQVQ 141
           G + TNE                LYEAKVK++A AENEAV R+ QRY++EDARKQSRQ++
Sbjct: 71  GINCTNE----------------LYEAKVKKMARAENEAVDRLTQRYKEEDARKQSRQIK 114

Query: 142 LCTKTPPSSKKRFWGDNG 159
            CTK PP SK+RF GD+G
Sbjct: 115 TCTKLPP-SKRRFCGDDG 131


>Medtr3g061710.1 | hypothetical protein | HC |
           chr3:24620657-24619688 | 20130731
          Length = 146

 Score =  119 bits (297), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 77/181 (42%), Positives = 95/181 (52%), Gaps = 63/181 (34%)

Query: 1   MMRRDQVPVRKLPSLVDLCVEKVIDNLRYLGNVGSVDHHLLERILPHCTLEQLMHVEKAS 60
           M R+DQ        LVDLCVEK IDN++YLG+V  VDHH++                   
Sbjct: 11  MKRKDQT------YLVDLCVEKAIDNVKYLGDVSHVDHHMM------------------- 45

Query: 61  VGCDLSPVTDKLWKKFFEKQFGTHSTNEVIKRMREKKVSFKWMQLYEAKVKEIAEAENEA 120
              DLS +++KLWKKF EKQFG   TNEV+K M+EK VSF W+                 
Sbjct: 46  ---DLSHISNKLWKKFIEKQFGIICTNEVVKDMKEKIVSFTWL----------------- 85

Query: 121 VARIKQRYQKEDARKQSRQVQLCTKTPPSSKKRFWGDNG--YNVSNLK-SNIMKKSRIEL 177
                         KQSR+++ CTK PP SK+R  G NG  YN SN+K SNIMKKS+   
Sbjct: 86  --------------KQSRKIKTCTKIPP-SKRRLCGGNGPRYNFSNVKSSNIMKKSKKYF 130

Query: 178 L 178
           L
Sbjct: 131 L 131