Miyakogusa Predicted Gene

Lj0g3v0122549.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0122549.1 tr|G7JEE0|G7JEE0_MEDTR Sister chromatid cohesion
protein PDS5-like protein OS=Medicago truncatula
GN,45.97,0.00000000000001, ,CUFF.7322.1
         (125 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g006875.2 | sister chromatid cohesion PDS5-like protein | ...    84   3e-17
Medtr4g006875.1 | sister chromatid cohesion PDS5-like protein | ...    84   4e-17

>Medtr4g006875.2 | sister chromatid cohesion PDS5-like protein | HC
           | chr4:842674-848397 | 20130731
          Length = 799

 Score = 84.0 bits (206), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 57/124 (45%), Positives = 77/124 (62%), Gaps = 8/124 (6%)

Query: 3   KEGNLNPLLDKTLPKSPDVG------LEKESDEKPQPPIRKIKFTLKSNGGTGVAPELVD 56
           K+ NLNP   KT  +S  VG      + K+S+EK + P+ KIK  +K +G   V P+ + 
Sbjct: 598 KDDNLNPSHKKTSVESHGVGKKNKSKVRKDSEEKHEAPVGKIKLCIKFDGKVVVPPQSIV 657

Query: 57  ANVEPKVSCEDEGRNKSAMNVEVENREEARSSGQPEVKKRRRHDDATPNKGLNKSSVVKV 116
           A VE +V CEDE ++KS+ N +VENR E  SS Q EV KR+R   +T +KG+NKSS  K 
Sbjct: 658 AKVESEVLCEDEKKHKSSTNTKVENRAEGGSSAQIEVDKRKRK-TSTSDKGVNKSSAKKA 716

Query: 117 YQES 120
            QES
Sbjct: 717 -QES 719


>Medtr4g006875.1 | sister chromatid cohesion PDS5-like protein | HC
           | chr4:842728-848441 | 20130731
          Length = 761

 Score = 83.6 bits (205), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 57/124 (45%), Positives = 77/124 (62%), Gaps = 8/124 (6%)

Query: 3   KEGNLNPLLDKTLPKSPDVG------LEKESDEKPQPPIRKIKFTLKSNGGTGVAPELVD 56
           K+ NLNP   KT  +S  VG      + K+S+EK + P+ KIK  +K +G   V P+ + 
Sbjct: 560 KDDNLNPSHKKTSVESHGVGKKNKSKVRKDSEEKHEAPVGKIKLCIKFDGKVVVPPQSIV 619

Query: 57  ANVEPKVSCEDEGRNKSAMNVEVENREEARSSGQPEVKKRRRHDDATPNKGLNKSSVVKV 116
           A VE +V CEDE ++KS+ N +VENR E  SS Q EV KR+R   +T +KG+NKSS  K 
Sbjct: 620 AKVESEVLCEDEKKHKSSTNTKVENRAEGGSSAQIEVDKRKRK-TSTSDKGVNKSSAKKA 678

Query: 117 YQES 120
            QES
Sbjct: 679 -QES 681