Miyakogusa Predicted Gene

Lj0g3v0122329.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0122329.1 Non Characterized Hit- tr|H0XGW1|H0XGW1_OTOGA
Uncharacterized protein OS=Otolemur garnettii
GN=POLR2,37.41,2e-19,HRDC-like,HRDC-like; DNA-directed RNA-polymerase
II subunit,RNA polymerase II, Rpb4, core;
DNA-DIREC,NODE_25702_length_500_cov_362.506012.path1.1
         (138 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g011890.2 | RNA polymerase II, Rpb4, core protein | HC | c...   279   7e-76
Medtr8g011890.1 | RNA polymerase II, Rpb4, core protein | HC | c...   279   7e-76
Medtr2g027530.1 | RNA polymerase II, Rpb4, core protein | HC | c...    79   1e-15

>Medtr8g011890.2 | RNA polymerase II, Rpb4, core protein | HC |
           chr8:3253475-3257317 | 20130731
          Length = 138

 Score =  279 bits (713), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 137/138 (99%), Positives = 137/138 (99%)

Query: 1   MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQSSDDPMNQVSQVFEKSLQ 60
           MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQSSDD MNQVSQVFEKSLQ
Sbjct: 1   MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQSSDDAMNQVSQVFEKSLQ 60

Query: 61  YVKRFSRYKNPDAVRQVREILARYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAQD 120
           YVKRFSRYKNPDAVRQVREILARYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAQD
Sbjct: 61  YVKRFSRYKNPDAVRQVREILARYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAQD 120

Query: 121 DEAIEKMLNDLSLIKKFE 138
           DEAIEKMLNDLSLIKKFE
Sbjct: 121 DEAIEKMLNDLSLIKKFE 138


>Medtr8g011890.1 | RNA polymerase II, Rpb4, core protein | HC |
           chr8:3253475-3257309 | 20130731
          Length = 138

 Score =  279 bits (713), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 137/138 (99%), Positives = 137/138 (99%)

Query: 1   MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQSSDDPMNQVSQVFEKSLQ 60
           MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQSSDD MNQVSQVFEKSLQ
Sbjct: 1   MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQSSDDAMNQVSQVFEKSLQ 60

Query: 61  YVKRFSRYKNPDAVRQVREILARYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAQD 120
           YVKRFSRYKNPDAVRQVREILARYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAQD
Sbjct: 61  YVKRFSRYKNPDAVRQVREILARYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAQD 120

Query: 121 DEAIEKMLNDLSLIKKFE 138
           DEAIEKMLNDLSLIKKFE
Sbjct: 121 DEAIEKMLNDLSLIKKFE 138


>Medtr2g027530.1 | RNA polymerase II, Rpb4, core protein | HC |
           chr2:10081162-10085201 | 20130731
          Length = 201

 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 44/118 (37%), Positives = 74/118 (62%), Gaps = 3/118 (2%)

Query: 22  KCLMNCEVSLILEHKYEQLQQSSDDPMNQVSQVFEKSLQYVKRFSRYK--NPDAVRQVRE 79
           KCLM+CE +++L+   +Q+   S DP  ++   F+K L Y K  S  K  NP++VR   E
Sbjct: 84  KCLMDCEAAVMLQGIQDQMVALSRDPSIKMPASFDKGLYYAKSSSSSKYSNPESVRHTLE 143

Query: 80  ILARYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAQDDEAIEKMLNDLSLIKKF 137
            L  + L E E+CV+ N+CPET +E  A++PS+K++ R  + + +E+ L++L+  K+ 
Sbjct: 144 PLMNHDLTESEICVIANVCPETADEVFALLPSLKSK-RGINSQPVEEALSELAKFKQM 200