Miyakogusa Predicted Gene
- Lj0g3v0122109.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0122109.1 Non Characterized Hit- tr|A9NTU4|A9NTU4_PICSI
Putative uncharacterized protein OS=Picea sitchensis
P,45.88,4e-16,seg,NULL; RRM,RNA recognition motif domain; RNA-BINDING
PROTEIN, PUTATIVE,NULL; FAMILY NOT NAMED,NUL,CUFF.7311.1
(313 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC | chr4:43224367-... 334 5e-92
Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC | chr3:34381451-... 324 7e-89
Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC | chr3:34381440-... 293 1e-79
Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 179 4e-45
Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 179 4e-45
Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 157 1e-38
Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC | chr7:43324307-... 141 9e-34
Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 134 1e-31
Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 134 1e-31
Medtr3g027140.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 129 5e-30
Medtr5g030020.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 100 3e-21
Medtr4g070080.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 99 6e-21
Medtr4g070080.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 99 7e-21
Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC | ch... 96 3e-20
Medtr4g104450.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 95 9e-20
Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 95 1e-19
Medtr4g131970.1 | polyadenylate-binding protein RBP47C | HC | ch... 94 1e-19
Medtr4g124940.1 | nucleolysin TIAR-like protein | HC | chr4:5182... 94 1e-19
Medtr3g025880.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 94 2e-19
Medtr3g025880.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 94 2e-19
Medtr2g022950.2 | polyadenylate-binding protein RBP47B | HC | ch... 94 2e-19
Medtr2g022950.4 | polyadenylate-binding protein RBP47B | HC | ch... 93 3e-19
Medtr2g022950.3 | polyadenylate-binding protein RBP47B | HC | ch... 93 3e-19
Medtr4g070190.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 93 4e-19
Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 92 5e-19
Medtr2g022950.1 | polyadenylate-binding protein RBP47B | HC | ch... 92 7e-19
Medtr4g086600.1 | polyadenylate-binding protein RBP47B | HC | ch... 92 8e-19
Medtr3g099590.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 91 2e-18
Medtr3g099590.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 91 2e-18
Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 90 4e-18
Medtr7g102730.1 | polyadenylate-binding protein | HC | chr7:4165... 89 4e-18
Medtr4g070140.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 89 7e-18
Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 88 1e-17
Medtr6g040070.1 | DEAD/DEAH-box helicase | HC | chr6:14397151-14... 87 3e-17
Medtr3g109090.1 | nucleolysin TIAR-like protein | HC | chr3:5042... 85 8e-17
Medtr3g109090.2 | nucleolysin TIAR-like protein | HC | chr3:5042... 85 8e-17
Medtr3g109090.3 | nucleolysin TIAR-like protein | HC | chr3:5042... 85 9e-17
Medtr3g101370.2 | polyadenylate-binding protein RBP47C | HC | ch... 84 2e-16
Medtr1g061870.1 | polyadenylate-binding plant protein, putative ... 84 2e-16
Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 84 2e-16
Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 84 2e-16
Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 83 4e-16
Medtr3g101370.1 | polyadenylate-binding protein RBP47C | HC | ch... 82 5e-16
Medtr6g040190.1 | polyadenylate-binding protein | LC | chr6:1440... 82 8e-16
Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 82 8e-16
Medtr2g013130.3 | U2 snRNP auxilliary factor, large subunit, spl... 82 9e-16
Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C, p... 81 1e-15
Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C, p... 81 1e-15
Medtr1g097440.2 | polyadenylate-binding protein | HC | chr1:4396... 81 1e-15
Medtr1g097440.1 | polyadenylate-binding protein | HC | chr1:4396... 81 1e-15
Medtr2g013130.4 | U2 snRNP auxilliary factor, large subunit, spl... 81 1e-15
Medtr3g102040.1 | polyadenylate-binding protein | HC | chr3:4701... 80 2e-15
Medtr8g022050.1 | nucleolysin TIAR-like protein | HC | chr8:7704... 80 3e-15
Medtr2g013130.1 | U2 snRNP auxilliary factor, large subunit, spl... 80 4e-15
Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 79 4e-15
Medtr2g013130.2 | U2 snRNP auxilliary factor, large subunit, spl... 79 5e-15
Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 79 5e-15
Medtr1g019150.1 | polyadenylate-binding protein | HC | chr1:5708... 79 7e-15
Medtr1g020080.2 | polyadenylate-binding protein RBP47C | HC | ch... 78 9e-15
Medtr1g115375.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 78 1e-14
Medtr4g031680.1 | U2 snRNP auxilliary factor, large subunit, spl... 78 1e-14
Medtr2g026180.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 77 2e-14
Medtr2g026180.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 77 2e-14
Medtr2g026180.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 77 2e-14
Medtr1g020080.1 | polyadenylate-binding protein RBP47C | HC | ch... 77 2e-14
Medtr4g085540.1 | polyadenylate-binding protein | HC | chr4:3341... 75 8e-14
Medtr6g004810.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 75 1e-13
Medtr3g082650.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 74 2e-13
Medtr3g005670.6 | U2 snRNP auxilliary factor, large subunit, spl... 72 5e-13
Medtr3g005670.7 | U2 snRNP auxilliary factor, large subunit, spl... 72 5e-13
Medtr4g052940.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 72 6e-13
Medtr1g097280.1 | cleavage stimulating factor, putative | HC | c... 72 6e-13
Medtr3g005670.4 | U2 snRNP auxilliary factor, large subunit, spl... 72 1e-12
Medtr4g052940.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 72 1e-12
Medtr4g052940.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 72 1e-12
Medtr4g052940.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 72 1e-12
Medtr3g005670.3 | U2 snRNP auxilliary factor, large subunit, spl... 72 1e-12
Medtr3g005670.5 | U2 snRNP auxilliary factor, large subunit, spl... 71 1e-12
Medtr4g036415.1 | splicing factor-like protein | HC | chr4:13104... 71 1e-12
Medtr5g017280.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 71 1e-12
Medtr5g017280.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 71 1e-12
Medtr5g017280.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 71 1e-12
Medtr5g017280.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 71 1e-12
Medtr3g005670.2 | U2 snRNP auxilliary factor, large subunit, spl... 71 1e-12
Medtr3g005670.1 | U2 snRNP auxilliary factor, large subunit, spl... 71 2e-12
Medtr3g103420.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 71 2e-12
Medtr7g010360.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 67 2e-11
Medtr4g088010.1 | heterogeneous nuclear ribonucleoprotein | HC |... 67 2e-11
Medtr1g073690.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 67 3e-11
Medtr1g073690.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 67 3e-11
Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 67 3e-11
Medtr7g118230.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 66 4e-11
Medtr8g463890.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 66 4e-11
Medtr4g122650.1 | flowering time control FCA-like protein | HC |... 66 4e-11
Medtr1g101520.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 66 4e-11
Medtr3g084040.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 66 5e-11
Medtr7g118120.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 66 5e-11
Medtr7g118120.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 66 5e-11
Medtr7g118120.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 66 5e-11
Medtr5g070100.1 | RNA recognition motif (RRM) containing protein... 62 5e-10
Medtr3g014000.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 62 5e-10
Medtr7g104800.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 62 6e-10
Medtr7g104800.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 62 6e-10
Medtr7g104800.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 62 6e-10
Medtr7g104800.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 62 6e-10
Medtr1g080390.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 62 7e-10
Medtr3g095230.2 | CC1-like splicing factor | LC | chr3:43513031-... 62 9e-10
Medtr3g095230.3 | CC1-like splicing factor | LC | chr3:43513031-... 62 9e-10
Medtr3g095230.1 | CC1-like splicing factor | LC | chr3:43513030-... 62 9e-10
Medtr8g031560.1 | eukaryotic translation initiation factor 3 sub... 61 1e-09
Medtr7g107580.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 61 1e-09
Medtr7g107580.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 61 2e-09
Medtr8g107310.1 | eukaryotic translation initiation factor 3 sub... 61 2e-09
Medtr8g092550.1 | CC1-like splicing factor | HC | chr8:38688579-... 60 4e-09
Medtr7g094660.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 60 4e-09
Medtr3g092490.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 7e-09
Medtr3g092490.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 7e-09
Medtr3g029580.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 59 8e-09
Medtr2g096560.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 58 1e-08
Medtr3g092490.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 58 1e-08
Medtr3g092490.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 58 1e-08
Medtr4g068120.2 | flowering time control FPA-like protein | HC |... 58 1e-08
Medtr4g068120.1 | flowering time control FPA-like protein | HC |... 58 1e-08
Medtr4g063560.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 57 2e-08
Medtr1g080150.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 57 2e-08
Medtr7g099940.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 56 4e-08
Medtr4g081520.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 56 5e-08
Medtr7g094670.1 | mRNA capping enzyme, putative | LC | chr7:3777... 55 9e-08
Medtr8g007390.3 | heterogeneous nuclear ribonucleoprotein | HC |... 55 1e-07
Medtr8g007390.4 | heterogeneous nuclear ribonucleoprotein | HC |... 55 1e-07
Medtr8g007390.2 | heterogeneous nuclear ribonucleoprotein | HC |... 55 1e-07
Medtr8g007390.1 | heterogeneous nuclear ribonucleoprotein | HC |... 55 1e-07
Medtr7g107580.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 1e-07
Medtr6g477870.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 54 2e-07
Medtr5g088220.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 54 2e-07
Medtr5g088220.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 54 2e-07
Medtr5g088220.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 54 2e-07
Medtr3g116130.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 2e-07
Medtr3g116130.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 3e-07
Medtr3g029580.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 54 3e-07
Medtr8g032590.6 | RNA recognition motif, a.k.a. RRM, RBD protein... 54 3e-07
Medtr8g032590.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 54 3e-07
Medtr5g064120.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 3e-07
Medtr7g117495.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 4e-07
Medtr4g035310.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 53 5e-07
Medtr7g117495.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 5e-07
Medtr4g035310.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 52 5e-07
Medtr5g071540.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 6e-07
Medtr3g462330.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 6e-07
Medtr2g026180.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 8e-07
Medtr7g096260.1 | multiple RNA-binding domain protein | HC | chr... 52 1e-06
Medtr7g096260.2 | multiple RNA-binding domain protein | HC | chr... 52 1e-06
Medtr5g017130.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 51 1e-06
Medtr8g024520.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 51 1e-06
Medtr8g024520.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 51 1e-06
Medtr7g108810.1 | pre-mRNA-splicing factor SF2-like protein | HC... 51 2e-06
Medtr5g044970.1 | peptidyl-prolyl cis-trans isomerase E-like pro... 50 2e-06
Medtr8g058530.1 | pre-mRNA-splicing factor SF2-like protein | HC... 50 3e-06
Medtr4g094235.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 3e-06
Medtr4g094235.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 3e-06
Medtr4g094235.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 3e-06
Medtr4g094235.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 3e-06
Medtr4g074930.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 3e-06
Medtr4g074930.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 3e-06
Medtr1g054675.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 4e-06
Medtr4g074930.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 4e-06
Medtr4g074930.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 4e-06
Medtr5g070450.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 49 4e-06
Medtr5g070450.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 49 4e-06
Medtr5g070450.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 49 4e-06
Medtr5g070450.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 49 4e-06
>Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC |
chr4:43224367-43221650 | 20130731
Length = 300
Score = 334 bits (857), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 188/322 (58%), Positives = 221/322 (68%), Gaps = 31/322 (9%)
Query: 1 MSITSFKSLTTMAESCLLSAPSSLFYNKTKHLFFSAPSRPLKLQLSSINPSPALSLAAT- 59
MSITSFKSLT MAESCLLS PS LFY K+K F S ++P K+Q NPS S ++
Sbjct: 1 MSITSFKSLT-MAESCLLSQPS-LFYTKSKSPFISNSAKPFKVQ----NPSYNSSKFSSS 54
Query: 60 --------THHRSSAPLFVAQTSDWAQQEEDNTLTLEDQEEGAEGVSETEAGWEPNXXXX 111
T H SS FVAQTSDWAQQEE +E+GA ++ +A W
Sbjct: 55 VSLVSKRRTRH-SSLVTFVAQTSDWAQQEE--------KEDGATWENQADATW-----VG 100
Query: 112 XXXXXXXXXXXXXXXXXXXXXAKLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETD 171
K+FVGNLP+D D KLA+LF Q GTV++AEVIYNR+TD
Sbjct: 101 ETESNENEEVEVASFEEPSEDLKIFVGNLPFDVDSEKLAQLFEQSGTVEIAEVIYNRDTD 160
Query: 172 QSRGFGFVTMKTVEDAEKAVDKLNGYDFGGRLLTVNKAAPRGSRPERAPRSFDAQPAFRV 231
+SRGFGFVTM T E+ E+AV+K +G++ GRLLTVNKAAPRG+ R PR+F++ R
Sbjct: 161 RSRGFGFVTMSTSEEVERAVNKFSGFELDGRLLTVNKAAPRGTPRLRQPRTFNS--GLRA 218
Query: 232 YVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALD 291
YVGNLPWD DNS LEQ+FSEHGKV SA+VVYDRETGRSRGFGFVTMS+EAE+NDAIAALD
Sbjct: 219 YVGNLPWDVDNSSLEQLFSEHGKVESAQVVYDRETGRSRGFGFVTMSNEAEMNDAIAALD 278
Query: 292 GQSLGGRTIRVNVAEDRPRRSF 313
GQS GR IRVNVAE+RPRRSF
Sbjct: 279 GQSFNGRAIRVNVAEERPRRSF 300
>Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC |
chr3:34381451-34378914 | 20130731
Length = 291
Score = 324 bits (830), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 188/318 (59%), Positives = 216/318 (67%), Gaps = 37/318 (11%)
Query: 1 MSITS----FKSLTTMAESCLLSAPSSLFYNKTKHLFFSAPSRPLKLQLSSINPSPALSL 56
MSITS FKSLT MAESCLLS+ S K+K FFS PS+ L L LS + + ++S+
Sbjct: 1 MSITSTTPLFKSLT-MAESCLLSSQS-----KSKPTFFSLPSKSLNLHLS-LKTNRSISI 53
Query: 57 AATTHHRSSAPLFVAQTSDWAQQEEDNTLTLEDQEEGAEGVSETEAGWEPNXXXXXXXXX 116
S +PLFVAQ E +TLT EE G+S WEP
Sbjct: 54 -------SPSPLFVAQ--------EGDTLTTSLDEEA--GLS---LDWEPTADAAETETG 93
Query: 117 XXXXXXXXXXXXXXXXAKLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGF 176
AKLFVGN P+D D KLA LF Q GTV++AEVIYNR+TD SRGF
Sbjct: 94 ADDSAEGYFVEPPED-AKLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGF 152
Query: 177 GFVTMKTVEDAEKAVDKLNGYDFGGRLLTVNKAAPRGSRPER---APRSFDAQPAFRVYV 233
GFVTM TVE+AE AV+K NGYD+ GR L VNKA+P+GSRPER APR+F +P R+YV
Sbjct: 153 GFVTMSTVEEAESAVEKFNGYDYNGRSLVVNKASPKGSRPERTERAPRTF--EPVLRIYV 210
Query: 234 GNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQ 293
NL W+ DNS+LEQVFSEHGK+VSARVVYDRETGRSRGFGFVTMSDE E+NDAIAALDGQ
Sbjct: 211 ANLAWEVDNSRLEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAALDGQ 270
Query: 294 SLGGRTIRVNVAEDRPRR 311
SL GRTIRV+VAEDRPRR
Sbjct: 271 SLEGRTIRVSVAEDRPRR 288
>Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC |
chr3:34381440-34379306 | 20130731
Length = 271
Score = 293 bits (750), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 172/300 (57%), Positives = 199/300 (66%), Gaps = 37/300 (12%)
Query: 1 MSITS----FKSLTTMAESCLLSAPSSLFYNKTKHLFFSAPSRPLKLQLSSINPSPALSL 56
MSITS FKSLT MAESCLLS+ S K+K FFS PS+ L L LS + + ++S+
Sbjct: 1 MSITSTTPLFKSLT-MAESCLLSSQS-----KSKPTFFSLPSKSLNLHLS-LKTNRSISI 53
Query: 57 AATTHHRSSAPLFVAQTSDWAQQEEDNTLTLEDQEEGAEGVSETEAGWEPNXXXXXXXXX 116
S +PLFVAQ E +TLT EE G+S WEP
Sbjct: 54 -------SPSPLFVAQ--------EGDTLTTSLDEEA--GLS---LDWEPTADAAETETG 93
Query: 117 XXXXXXXXXXXXXXXXAKLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGF 176
AKLFVGN P+D D KLA LF Q GTV++AEVIYNR+TD SRGF
Sbjct: 94 ADDSAEGYFVEPPED-AKLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGF 152
Query: 177 GFVTMKTVEDAEKAVDKLNGYDFGGRLLTVNKAAPRGSRP---ERAPRSFDAQPAFRVYV 233
GFVTM TVE+AE AV+K NGYD+ GR L VNKA+P+GSRP ERAPR+F +P R+YV
Sbjct: 153 GFVTMSTVEEAESAVEKFNGYDYNGRSLVVNKASPKGSRPERTERAPRTF--EPVLRIYV 210
Query: 234 GNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQ 293
NL W+ DNS+LEQVFSEHGK+VSARVVYDRETGRSRGFGFVTMSDE E+NDAIAALDGQ
Sbjct: 211 ANLAWEVDNSRLEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAALDGQ 270
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 52/86 (60%), Gaps = 3/86 (3%)
Query: 230 RVYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAA 289
+++VGN P+D D+ +L +F + G V A V+Y+R+T SRGFGFVTMS E A+
Sbjct: 110 KLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAESAVEK 169
Query: 290 LDGQSLGGRTIRVNVAE---DRPRRS 312
+G GR++ VN A RP R+
Sbjct: 170 FNGYDYNGRSLVVNKASPKGSRPERT 195
>Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 179 bits (453), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 121/326 (37%), Positives = 164/326 (50%), Gaps = 67/326 (20%)
Query: 9 LTTMAESCLLSAPSSLFYNKTKHLFFSAPSRPLK-----LQLSSINPSPALSLAATTHHR 63
++T A S +L SLF + F S PS L SS++ P+LS++ R
Sbjct: 1 MSTSATSLVLP---SLFTKNSPQCFSSLPSLSLNPNFKPFSFSSVSLRPSLSISHRFISR 57
Query: 64 SSAPLFVAQTSDWAQQEEDNTLTLEDQEEGAEGVSETEAGWEPNXXXXXXXXXXXXXXXX 123
VA +S++ Q+E+ T +D ++ + PN
Sbjct: 58 ------VAVSSEFDQEED----TFDDGDD--------TPSYSPNQ--------------- 84
Query: 124 XXXXXXXXXAKLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKT 183
+LFVGNLP+ D +LAE+F G V++ EVIY++ T +SRGFGFVTM +
Sbjct: 85 ----------RLFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSS 134
Query: 184 VEDAEKAVDKLNGYDFGGRLLTVNKAAPR----------------GSRPERAPRSFDAQP 227
+ E A +LNGY GR L VN P G RP PR +
Sbjct: 135 AAEVEAAAQQLNGYVVDGRELRVNAGPPPPPRSENSRFGENPRFGGDRPRGPPRGGSSDG 194
Query: 228 AFRVYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAI 287
RV+VGNL W DN LE +F E G+V+ A+V+YDRE+GRSRGFGFVT S E++ AI
Sbjct: 195 DNRVHVGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAI 254
Query: 288 AALDGQSLGGRTIRVNVAEDRPRRSF 313
LDG L GR IRV+ A+ RP+R F
Sbjct: 255 RTLDGADLNGRAIRVSPADSRPKRQF 280
>Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 179 bits (453), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 121/326 (37%), Positives = 164/326 (50%), Gaps = 67/326 (20%)
Query: 9 LTTMAESCLLSAPSSLFYNKTKHLFFSAPSRPLK-----LQLSSINPSPALSLAATTHHR 63
++T A S +L SLF + F S PS L SS++ P+LS++ R
Sbjct: 1 MSTSATSLVLP---SLFTKNSPQCFSSLPSLSLNPNFKPFSFSSVSLRPSLSISHRFISR 57
Query: 64 SSAPLFVAQTSDWAQQEEDNTLTLEDQEEGAEGVSETEAGWEPNXXXXXXXXXXXXXXXX 123
VA +S++ Q+E+ T +D ++ + PN
Sbjct: 58 ------VAVSSEFDQEED----TFDDGDD--------TPSYSPNQ--------------- 84
Query: 124 XXXXXXXXXAKLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKT 183
+LFVGNLP+ D +LAE+F G V++ EVIY++ T +SRGFGFVTM +
Sbjct: 85 ----------RLFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSS 134
Query: 184 VEDAEKAVDKLNGYDFGGRLLTVNKAAPR----------------GSRPERAPRSFDAQP 227
+ E A +LNGY GR L VN P G RP PR +
Sbjct: 135 AAEVEAAAQQLNGYVVDGRELRVNAGPPPPPRSENSRFGENPRFGGDRPRGPPRGGSSDG 194
Query: 228 AFRVYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAI 287
RV+VGNL W DN LE +F E G+V+ A+V+YDRE+GRSRGFGFVT S E++ AI
Sbjct: 195 DNRVHVGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAI 254
Query: 288 AALDGQSLGGRTIRVNVAEDRPRRSF 313
LDG L GR IRV+ A+ RP+R F
Sbjct: 255 RTLDGADLNGRAIRVSPADSRPKRQF 280
>Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:17072567-17075712 | 20130731
Length = 285
Score = 157 bits (397), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 76/176 (43%), Positives = 112/176 (63%), Gaps = 7/176 (3%)
Query: 134 KLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDK 193
KL+ GNLPY D LA L + G+ +L EV+Y+R+T +SRGF FVTM VED +
Sbjct: 114 KLYFGNLPYSVDSALLAGLIEEYGSAELIEVLYDRDTGKSRGFAFVTMSCVEDCNAVIQN 173
Query: 194 LNGYDFGGRLLTVNKA-APRGSRPERAPRSFDAQPAFRVYVGNLPWDFDNSQLEQVFSEH 252
L+G +F GR L VN + P+ P + ++++VGNL W + L Q F EH
Sbjct: 174 LDGKEFMGRTLRVNFSDKPKPKEP------LYPETEYKLFVGNLAWTVTSESLTQAFQEH 227
Query: 253 GKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQSLGGRTIRVNVAEDR 308
G VV ARV++D ETG+SRG+GFV+ + ++E++ A+A +D L GRT+RV++A+ +
Sbjct: 228 GTVVGARVLFDGETGKSRGYGFVSYATKSEMDTALAIMDNVELEGRTLRVSLAQGK 283
>Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC |
chr7:43324307-43322087 | 20130731
Length = 318
Score = 141 bits (355), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 72/184 (39%), Positives = 109/184 (59%), Gaps = 9/184 (4%)
Query: 133 AKLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVD 192
+L+VGNLP+ +LA++F + GTV E++Y+R TD+SRGF FVTMK+ E+A++A+
Sbjct: 109 GRLYVGNLPFSMTSSQLADIFAEAGTVVSVEIVYDRLTDRSRGFAFVTMKSAEEAKEAIR 168
Query: 193 KLNGYDFGGRLLTVN-----KAAPR---GSRPERAPRSFDAQPAFRVYVGNLPWDFDNSQ 244
+G GGR VN K R G + + R F P ++Y GNL W ++
Sbjct: 169 MFDGSQVGGRSAKVNFPEVPKGGERLVMGQKVRNSYRGFVDSP-HKIYAGNLGWGMNSQD 227
Query: 245 LEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQSLGGRTIRVNV 304
L F E ++ A+++Y+R+ GRSRGFGFVT L A+ A++G + GR +R+N+
Sbjct: 228 LRDAFDEQPGLLGAKIIYERDNGRSRGFGFVTFETAEHLEAALNAMNGVEVQGRPLRLNL 287
Query: 305 AEDR 308
A R
Sbjct: 288 AAAR 291
Score = 89.0 bits (219), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 42/79 (53%), Positives = 52/79 (65%)
Query: 228 AFRVYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAI 287
A R+YVGNLP+ +SQL +F+E G VVS +VYDR T RSRGF FVTM E +AI
Sbjct: 108 AGRLYVGNLPFSMTSSQLADIFAEAGTVVSVEIVYDRLTDRSRGFAFVTMKSAEEAKEAI 167
Query: 288 AALDGQSLGGRTIRVNVAE 306
DG +GGR+ +VN E
Sbjct: 168 RMFDGSQVGGRSAKVNFPE 186
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 134 KLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDK 193
K++ GNL + + L + F++ + A++IY R+ +SRGFGFVT +T E E A++
Sbjct: 213 KIYAGNLGWGMNSQDLRDAFDEQPGLLGAKIIYERDNGRSRGFGFVTFETAEHLEAALNA 272
Query: 194 LNGYDFGGRLLTVNKAAPRGS 214
+NG + GR L +N AA R S
Sbjct: 273 MNGVEVQGRPLRLNLAAARTS 293
>Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700218-24705084 | 20130731
Length = 311
Score = 134 bits (336), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 70/183 (38%), Positives = 111/183 (60%), Gaps = 5/183 (2%)
Query: 134 KLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDK 193
+LFVGNLP+ +LA+LF + G V E++Y+ T++SRGF FVTM VEDAE+A+
Sbjct: 109 RLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEAIRM 168
Query: 194 LNGYDFGGRLLTVN--KAAPRGSRPERAP--RSFDAQPAFRVYVGNLPWDFDNSQLEQVF 249
+G GGR + VN + G R + R + P ++Y GNL WD + L + F
Sbjct: 169 FDGTTVGGRAIKVNFPEVPIVGKRVQMGSTYRGYVDSPH-KIYAGNLGWDMTSQYLRKAF 227
Query: 250 SEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQSLGGRTIRVNVAEDRP 309
++ ++SA+VVY+R G+SRG+GFV+ ++ A++A++G + GR +R+ +A D
Sbjct: 228 AKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALSAMNGVEVQGRPLRLKLAVDNR 287
Query: 310 RRS 312
+ S
Sbjct: 288 KPS 290
>Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700221-24703822 | 20130731
Length = 311
Score = 134 bits (336), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 70/183 (38%), Positives = 111/183 (60%), Gaps = 5/183 (2%)
Query: 134 KLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDK 193
+LFVGNLP+ +LA+LF + G V E++Y+ T++SRGF FVTM VEDAE+A+
Sbjct: 109 RLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEAIRM 168
Query: 194 LNGYDFGGRLLTVN--KAAPRGSRPERAP--RSFDAQPAFRVYVGNLPWDFDNSQLEQVF 249
+G GGR + VN + G R + R + P ++Y GNL WD + L + F
Sbjct: 169 FDGTTVGGRAIKVNFPEVPIVGKRVQMGSTYRGYVDSPH-KIYAGNLGWDMTSQYLRKAF 227
Query: 250 SEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQSLGGRTIRVNVAEDRP 309
++ ++SA+VVY+R G+SRG+GFV+ ++ A++A++G + GR +R+ +A D
Sbjct: 228 AKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALSAMNGVEVQGRPLRLKLAVDNR 287
Query: 310 RRS 312
+ S
Sbjct: 288 KPS 290
>Medtr3g027140.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:8413608-8404220 | 20130731
Length = 235
Score = 129 bits (323), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 72/175 (41%), Positives = 104/175 (59%), Gaps = 3/175 (1%)
Query: 134 KLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDK 193
KL+VGN+P +L ++ + G V+ AEV+Y++ + +SR F FVTMKTVEDA A +K
Sbjct: 61 KLYVGNIPRTVSNDELEKIVQEHGAVEKAEVMYDKYSKRSRRFAFVTMKTVEDANAAAEK 120
Query: 194 LNGYDFGGRLLTVN---KAAPRGSRPERAPRSFDAQPAFRVYVGNLPWDFDNSQLEQVFS 250
LNG + GGR + VN K P +A S ++VYVGNL + + L++ FS
Sbjct: 121 LNGTEIGGREIKVNITEKPLTTEGLPVQAGESTFVDSPYKVYVGNLAKNVTSDSLKKFFS 180
Query: 251 EHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQSLGGRTIRVNVA 305
E G +SA+V T +S GFGFVT S + ++ AI++ + L G+ IRVN A
Sbjct: 181 EKGNALSAKVSRAPGTSKSSGFGFVTFSSDEDVEAAISSFNNALLEGQKIRVNKA 235
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Query: 227 PAFR-VYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELND 285
PA R +YVGN+P N +LE++ EHG V A V+YD+ + RSR F FVTM + N
Sbjct: 57 PALRKLYVGNIPRTVSNDELEKIVQEHGAVEKAEVMYDKYSKRSRRFAFVTMKTVEDANA 116
Query: 286 AIAALDGQSLGGRTIRVNVAE 306
A L+G +GGR I+VN+ E
Sbjct: 117 AAEKLNGTEIGGREIKVNITE 137
>Medtr5g030020.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:12627820-12622359 | 20130731
Length = 324
Score = 99.8 bits (247), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 97/179 (54%), Gaps = 2/179 (1%)
Query: 135 LFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDKL 194
L V NLP+ + +LF Q GTV E+I +++ + +G+ FVTM + E A+ AVDK
Sbjct: 98 LIVFNLPWSLSKPDIKDLFGQCGTVIDVEIIKSKD-GKGKGYTFVTMDSGEGAQAAVDKF 156
Query: 195 NGYDFGGRLLTVNKAAPRGSRPERAPRSFDAQPAFRVYVGNLPWDFDNSQLEQVFSEHGK 254
N + GR+L V A P + + +Y NL W ++ L +F+E+ K
Sbjct: 157 NATEISGRILRVEFAKGFKKPRPPPPAPTPKEARYVIYASNLAWKARSTHLRDIFTENFK 216
Query: 255 V-VSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQSLGGRTIRVNVAEDRPRRS 312
VSARVV+ G+S G+GFV+ E E AI+AL G+ L GR + V ++E + + +
Sbjct: 217 TPVSARVVFQVPGGKSAGYGFVSYHTEEEAEAAISALQGKELLGRPLLVKISERKVKEA 275
>Medtr4g070080.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26374538-26375597 | 20130731
Length = 128
Score = 98.6 bits (244), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 43/82 (52%), Positives = 60/82 (73%)
Query: 225 AQPAFRVYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELN 284
A +R +VG L W DN LE+ FS++G++V ++++ DRETGRSRGFGFVT ++E +N
Sbjct: 2 ADVEYRCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMN 61
Query: 285 DAIAALDGQSLGGRTIRVNVAE 306
DAI A++GQ L GR I VN A+
Sbjct: 62 DAIEAMNGQDLDGRNITVNQAQ 83
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 47/76 (61%)
Query: 134 KLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDK 193
+ FVG L + D L + F+Q G + +++I +RET +SRGFGFVT + A++
Sbjct: 7 RCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAIEA 66
Query: 194 LNGYDFGGRLLTVNKA 209
+NG D GR +TVN+A
Sbjct: 67 MNGQDLDGRNITVNQA 82
>Medtr4g070080.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26374412-26375716 | 20130731
Length = 161
Score = 98.6 bits (244), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 43/82 (52%), Positives = 60/82 (73%)
Query: 225 AQPAFRVYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELN 284
A +R +VG L W DN LE+ FS++G++V ++++ DRETGRSRGFGFVT ++E +N
Sbjct: 2 ADVEYRCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMN 61
Query: 285 DAIAALDGQSLGGRTIRVNVAE 306
DAI A++GQ L GR I VN A+
Sbjct: 62 DAIEAMNGQDLDGRNITVNQAQ 83
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 47/76 (61%)
Query: 134 KLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDK 193
+ FVG L + D L + F+Q G + +++I +RET +SRGFGFVT + A++
Sbjct: 7 RCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAIEA 66
Query: 194 LNGYDFGGRLLTVNKA 209
+NG D GR +TVN+A
Sbjct: 67 MNGQDLDGRNITVNQA 82
>Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC |
chr2:41853094-41847353 | 20130731
Length = 428
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 89/172 (51%), Gaps = 4/172 (2%)
Query: 135 LFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDKL 194
L++G+L Y D + L F+ G V ++I N+ T Q G+GF+ + AE+ +
Sbjct: 17 LWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAERVLQTY 76
Query: 195 NGYDFGGRLLTVNKAAPRGSRPERAPRSFDAQPAFRVYVGNLPWDFDNSQLEQVFSEH-G 253
NG G T ER P DA P ++VG+L D + L++ F H G
Sbjct: 77 NGTQMPGTEQTFRLNWASFGIGERRP---DAGPDHSIFVGDLAPDVTDYLLQETFRTHYG 133
Query: 254 KVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQSLGGRTIRVNVA 305
V A+VV D TGRS+G+GFV SDE+E N A++ ++G R +R++ A
Sbjct: 134 SVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRISAA 185
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 86/200 (43%), Gaps = 38/200 (19%)
Query: 135 LFVGNLPYDADGHKLAELF-NQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDK 193
+FVG+L D + L E F G+V A+V+ + T +S+G+GFV + +A+ +
Sbjct: 110 IFVGDLAPDVTDYLLQETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSE 169
Query: 194 LNGYDFGGRLLTVNKAAPRGSRPER------------------------------APRSF 223
+NG R + ++ A P+ + + P +
Sbjct: 170 MNGVYCSTRPMRISAATPKKTTGYQQNPYAAVVAAAPVPKAIYPVPAYTTAPVNTVPPEY 229
Query: 224 DAQPAFRVYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAEL 283
D +YVGNL + +L+Q F + G++VS +V + GFV A
Sbjct: 230 DVNNT-TIYVGNLDLNVSEEELKQNFLQFGEIVSVKV------HPGKACGFVQFGARASA 282
Query: 284 NDAIAALDGQSLGGRTIRVN 303
+AI + G+ LG + IRV+
Sbjct: 283 EEAIQKMQGKILGQQVIRVS 302
>Medtr4g104450.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
LC | chr4:43219118-43218715 | 20130731
Length = 104
Score = 94.7 bits (234), Expect = 9e-20, Method: Composition-based stats.
Identities = 51/105 (48%), Positives = 70/105 (66%), Gaps = 5/105 (4%)
Query: 176 FGFVTMKTVEDAEKAVDKLNGYDFGGRLLTVNKAAPRGSRPE--RAPRSFDAQPAFRVYV 233
FG VTM TVE+ EKA+ K NGY+ G LTV+K R + P+ + P +FD+ F VYV
Sbjct: 2 FGCVTMSTVEEVEKAMKKFNGYELAGNFLTVSKDDIRNTLPDLPKRPHAFDS--PFSVYV 59
Query: 234 GNLPWDFDNSQ-LEQVFSEHGKVVSARVVYDRETGRSRGFGFVTM 277
L +N++ LEQ+FS+HGKV A ++ D+ + RSRG+GFVTM
Sbjct: 60 TKLSRSIENNEHLEQLFSKHGKVECAELICDKVSSRSRGYGFVTM 104
>Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527069-45523373 | 20130731
Length = 268
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 43/93 (46%), Positives = 63/93 (67%)
Query: 218 RAPRSFDAQPAFRVYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTM 277
+A R + P ++++G + + D + L + FS +G+V+ AR++ DRETGRSRGFGF+T
Sbjct: 31 QAIRCMCSAPTTKLFIGGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITF 90
Query: 278 SDEAELNDAIAALDGQSLGGRTIRVNVAEDRPR 310
+ E + AI ALDGQ L GR +RVN A +RPR
Sbjct: 91 NSVEEASSAIQALDGQDLHGRRVRVNYANERPR 123
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 50/79 (63%)
Query: 134 KLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDK 193
KLF+G + Y D + L E F++ G V A +I +RET +SRGFGF+T +VE+A A+
Sbjct: 43 KLFIGGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVEEASSAIQA 102
Query: 194 LNGYDFGGRLLTVNKAAPR 212
L+G D GR + VN A R
Sbjct: 103 LDGQDLHGRRVRVNYANER 121
>Medtr4g131970.1 | polyadenylate-binding protein RBP47C | HC |
chr4:55111286-55115662 | 20130731
Length = 411
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 93/177 (52%), Gaps = 8/177 (4%)
Query: 135 LFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDKL 194
L++G+L Y D + L F+ G V +VI N++T+QS G+GF+ + AE+ +
Sbjct: 76 LWIGDLQYWMDENYLYNCFSHTGEVGSVKVIRNKQTNQSEGYGFLEFISRAGAERVLQTF 135
Query: 195 NGYDF--GGRLLTVNKAAPRGSRPERAPRSFDAQPAFRVYVGNLPWDFDNSQLEQVF-SE 251
NG GG+ +N A + D P + ++VG+L D + L +VF +
Sbjct: 136 NGTIMPNGGQNFRLNWATFSSGE-----KRHDDSPDYTIFVGDLAADVSDHHLTEVFRTR 190
Query: 252 HGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQSLGGRTIRVNVAEDR 308
+ V A+VV DR TGR++G+GFV +DE+E A+ + G R +R+ A ++
Sbjct: 191 YNSVKGAKVVIDRTTGRTKGYGFVRFADESEQMRAMTEMQGVLCSTRPMRIGPASNK 247
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 90/179 (50%), Gaps = 17/179 (9%)
Query: 135 LFVGNLPYDADGHKLAELF-NQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDK 193
+FVG+L D H L E+F + +V A+V+ +R T +++G+GFV + +A+ +
Sbjct: 169 IFVGDLAADVSDHHLTEVFRTRYNSVKGAKVVIDRTTGRTKGYGFVRFADESEQMRAMTE 228
Query: 194 LNGYDFGGRLLTVNKAAPRG----------SRPERAPRSFDAQPAFRVYVGNLPWDFDNS 243
+ G R + + A+ + P+ ++ + ++VGNL + +
Sbjct: 229 MQGVLCSTRPMRIGPASNKNLGTQTSKASYQNPQGGAQNENDPNNTTIFVGNLDPNVTDE 288
Query: 244 QLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQSLGGRTIRV 302
L+QVF+++G++V ++ + GFV +D + +A+ L+G LGG+ +R+
Sbjct: 289 HLKQVFTQYGELVHVKIPSGKRC------GFVQFADRSSAEEALRVLNGTLLGGQNVRL 341
>Medtr4g124940.1 | nucleolysin TIAR-like protein | HC |
chr4:51822192-51817182 | 20130731
Length = 404
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 88/171 (51%), Gaps = 11/171 (6%)
Query: 135 LFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDKL 194
++VGN+ L ELF+ G ++ ++I ++ +GFV A A+ L
Sbjct: 48 VYVGNIHPQVSEPLLQELFSSAGALEGCKLIRKEKSS----YGFVDYFDRSSAAIAIVTL 103
Query: 195 NGYDFGGRLLTVNKAAPRGSRPERAPRSFDAQPAFRVYVGNLPWDFDNSQLEQVFSEHGK 254
NG + G+ + VN A RG R D F ++VG+L + ++ L FS +
Sbjct: 104 NGRNIFGQSIKVNWAYTRGQRE-------DTSGHFHIFVGDLSPEVTDATLYACFSAYSS 156
Query: 255 VVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQSLGGRTIRVNVA 305
ARV++D++TGRSRGFGFV+ ++ E AI L G+ LG R IR N A
Sbjct: 157 CSDARVMWDQKTGRSRGFGFVSFRNQQEAQSAINDLTGKWLGSRQIRCNWA 207
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 81/194 (41%), Gaps = 29/194 (14%)
Query: 135 LFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDKL 194
+FVG+L + L F+ + A V+++++T +SRGFGFV+ + ++A+ A++ L
Sbjct: 133 IFVGDLSPEVTDATLYACFSAYSSCSDARVMWDQKTGRSRGFGFVSFRNQQEAQSAINDL 192
Query: 195 NGYDFGGRLLTVNKAAP--------------------RGSRPERAPRSFDAQPA-----F 229
G G R + N A G+ E + D P
Sbjct: 193 TGKWLGSRQIRCNWATKGANMNGENQSSESKSVVELTSGTSEEAQEMTSDDSPEKNPQYT 252
Query: 230 RVYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAA 289
VYVGNL + + L H + + D R +GFGFV S E AI
Sbjct: 253 TVYVGNLAPEVTSVDLHH----HFHALGVGTIEDVRVQRDKGFGFVRYSTHGEAALAIQM 308
Query: 290 LDGQSLGGRTIRVN 303
+ + L G+ I+ +
Sbjct: 309 GNTRFLFGKPIKCS 322
>Medtr3g025880.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr3:7898677-7894080 | 20130731
Length = 447
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/96 (45%), Positives = 64/96 (66%)
Query: 218 RAPRSFDAQPAFRVYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTM 277
+A R F + P +++VG + ++ D L FS++G+V+ AR++ DRE+GRS+GFGFVT
Sbjct: 33 QAIRCFSSTPNTKLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTY 92
Query: 278 SDEAELNDAIAALDGQSLGGRTIRVNVAEDRPRRSF 313
+ E + AI ALDGQ L GR + VN A +RPR F
Sbjct: 93 NTVEEASSAIQALDGQDLYGRRVGVNFANERPRDGF 128
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 51/79 (64%)
Query: 134 KLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDK 193
KLFVG + Y+ D L++ F++ G V A +I +RE+ +S+GFGFVT TVE+A A+
Sbjct: 45 KLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSAIQA 104
Query: 194 LNGYDFGGRLLTVNKAAPR 212
L+G D GR + VN A R
Sbjct: 105 LDGQDLYGRRVGVNFANER 123
>Medtr3g025880.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr3:7898604-7894080 | 20130731
Length = 447
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/96 (45%), Positives = 64/96 (66%)
Query: 218 RAPRSFDAQPAFRVYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTM 277
+A R F + P +++VG + ++ D L FS++G+V+ AR++ DRE+GRS+GFGFVT
Sbjct: 33 QAIRCFSSTPNTKLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTY 92
Query: 278 SDEAELNDAIAALDGQSLGGRTIRVNVAEDRPRRSF 313
+ E + AI ALDGQ L GR + VN A +RPR F
Sbjct: 93 NTVEEASSAIQALDGQDLYGRRVGVNFANERPRDGF 128
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 51/79 (64%)
Query: 134 KLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDK 193
KLFVG + Y+ D L++ F++ G V A +I +RE+ +S+GFGFVT TVE+A A+
Sbjct: 45 KLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSAIQA 104
Query: 194 LNGYDFGGRLLTVNKAAPR 212
L+G D GR + VN A R
Sbjct: 105 LDGQDLYGRRVGVNFANER 123
>Medtr2g022950.2 | polyadenylate-binding protein RBP47B | HC |
chr2:7987476-7990818 | 20130731
Length = 284
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 93/177 (52%), Gaps = 6/177 (3%)
Query: 135 LFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDKL 194
L++G+L Y D + L F G + +VI N++T QS G+GF+ T AE+ +
Sbjct: 62 LWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNTRATAERVLQTY 121
Query: 195 NGYDF--GGRLLTVNKAAPRGSRPERAPRSFDAQPAFRVYVGNLPWDFDNSQLEQVF-SE 251
NG GG+ +N A S ER+ R D P ++VG+L D + L++ F +
Sbjct: 122 NGTIMPNGGQNYRLNWAT--FSAGERSSRQDDG-PDHTIFVGDLAADVTDYLLQETFRAR 178
Query: 252 HGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQSLGGRTIRVNVAEDR 308
+ V A+VV DR TGRS+G+GFV +DE E A+ + G R +R+ A ++
Sbjct: 179 YNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEMQGVLCSTRPMRIGPATNK 235
>Medtr2g022950.4 | polyadenylate-binding protein RBP47B | HC |
chr2:7987476-7991101 | 20130731
Length = 271
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 93/177 (52%), Gaps = 6/177 (3%)
Query: 135 LFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDKL 194
L++G+L Y D + L F G + +VI N++T QS G+GF+ T AE+ +
Sbjct: 62 LWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNTRATAERVLQTY 121
Query: 195 NGYDF--GGRLLTVNKAAPRGSRPERAPRSFDAQPAFRVYVGNLPWDFDNSQLEQVF-SE 251
NG GG+ +N A S ER+ R D P ++VG+L D + L++ F +
Sbjct: 122 NGTIMPNGGQNYRLNWAT--FSAGERSSRQDDG-PDHTIFVGDLAADVTDYLLQETFRAR 178
Query: 252 HGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQSLGGRTIRVNVAEDR 308
+ V A+VV DR TGRS+G+GFV +DE E A+ + G R +R+ A ++
Sbjct: 179 YNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEMQGVLCSTRPMRIGPATNK 235
>Medtr2g022950.3 | polyadenylate-binding protein RBP47B | HC |
chr2:7987476-7991094 | 20130731
Length = 271
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 93/177 (52%), Gaps = 6/177 (3%)
Query: 135 LFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDKL 194
L++G+L Y D + L F G + +VI N++T QS G+GF+ T AE+ +
Sbjct: 62 LWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNTRATAERVLQTY 121
Query: 195 NGYDF--GGRLLTVNKAAPRGSRPERAPRSFDAQPAFRVYVGNLPWDFDNSQLEQVF-SE 251
NG GG+ +N A S ER+ R D P ++VG+L D + L++ F +
Sbjct: 122 NGTIMPNGGQNYRLNWAT--FSAGERSSRQDDG-PDHTIFVGDLAADVTDYLLQETFRAR 178
Query: 252 HGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQSLGGRTIRVNVAEDR 308
+ V A+VV DR TGRS+G+GFV +DE E A+ + G R +R+ A ++
Sbjct: 179 YNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEMQGVLCSTRPMRIGPATNK 235
>Medtr4g070190.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26418780-26419998 | 20130731
Length = 164
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 58/82 (70%)
Query: 225 AQPAFRVYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELN 284
A +R +VG L W D+ LE+ FS++G+++ ++++ DRETGRSRGFGFVT +DE +
Sbjct: 4 ADVEYRCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMR 63
Query: 285 DAIAALDGQSLGGRTIRVNVAE 306
DAI ++GQ + GR I VN A+
Sbjct: 64 DAIEGMNGQDMDGRNITVNEAQ 85
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 47/76 (61%)
Query: 134 KLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDK 193
+ FVG L + D L + F+Q G + +++I +RET +SRGFGFVT + A++
Sbjct: 9 RCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMRDAIEG 68
Query: 194 LNGYDFGGRLLTVNKA 209
+NG D GR +TVN+A
Sbjct: 69 MNGQDMDGRNITVNEA 84
>Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:29411645-29406062 | 20130731
Length = 379
Score = 92.4 bits (228), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 62/177 (35%), Positives = 92/177 (51%), Gaps = 10/177 (5%)
Query: 133 AKLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVD 192
A +VGNL L ELF Q G V V +R T+Q +G+GFV ++ EDA+ A+
Sbjct: 25 ATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIK 84
Query: 193 KLNGYDFGGRLLTVNKAAPRGSRPERAPRSFDAQPAFRVYVGNLPWDFDNSQLEQVFSEH 252
LN G+ + VNKA+ + +S D +++GNL D D L FS
Sbjct: 85 VLNMIKLYGKPIRVNKAS-------QDKKSLDV--GANLFIGNLDPDVDEKLLYDTFSAF 135
Query: 253 GKVVS-ARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQSLGGRTIRVNVAEDR 308
G +V+ +++ D +TG SRGFGF++ + AI A++GQ L R I V+ A +
Sbjct: 136 GVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKK 192
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 56/106 (52%), Gaps = 6/106 (5%)
Query: 133 AKLFVGNLPYDADGHKLAELFNQVGT-VDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAV 191
A LF+GNL D D L + F+ G V +++ + +T SRGFGF++ + E ++ A+
Sbjct: 112 ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAI 171
Query: 192 DKLNGYDFGGRLLTVNKAAPRGSRPERAPRSFDAQPAFRVYVGNLP 237
+ +NG R +TV+ A + ++ ER PA RV + P
Sbjct: 172 EAMNGQYLCNRQITVSYAYKKDTKGER-----HGTPAERVLAASNP 212
>Medtr2g022950.1 | polyadenylate-binding protein RBP47B | HC |
chr2:7987418-7992129 | 20130731
Length = 401
Score = 92.0 bits (227), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 93/177 (52%), Gaps = 6/177 (3%)
Query: 135 LFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDKL 194
L++G+L Y D + L F G + +VI N++T QS G+GF+ T AE+ +
Sbjct: 62 LWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNTRATAERVLQTY 121
Query: 195 NGYDF--GGRLLTVNKAAPRGSRPERAPRSFDAQPAFRVYVGNLPWDFDNSQLEQVF-SE 251
NG GG+ +N A S ER+ R D P ++VG+L D + L++ F +
Sbjct: 122 NGTIMPNGGQNYRLNWAT--FSAGERSSRQDDG-PDHTIFVGDLAADVTDYLLQETFRAR 178
Query: 252 HGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQSLGGRTIRVNVAEDR 308
+ V A+VV DR TGRS+G+GFV +DE E A+ + G R +R+ A ++
Sbjct: 179 YNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEMQGVLCSTRPMRIGPATNK 235
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 87/184 (47%), Gaps = 28/184 (15%)
Query: 135 LFVGNLPYDADGHKLAELFN-QVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDK 193
+FVG+L D + L E F + +V A+V+ +R T +S+G+GFV + +A+ +
Sbjct: 157 IFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTE 216
Query: 194 LNGYDFGGRLLTVNKAA---------------PRGSRPERAPRSFDAQPAFRVYVGNLPW 238
+ G R + + A P G + E P + ++VGNL
Sbjct: 217 MQGVLCSTRPMRIGPATNKNPAATTQPKASYNPSGGQSENDPNNTT------IFVGNLDP 270
Query: 239 DFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQSLGGR 298
+ + L QVF+++G++V ++ + G FV SD + +AI L+G LGG+
Sbjct: 271 NVTDDHLRQVFTQYGELVHVKIPSGKRCG------FVQFSDRSCAEEAIRVLNGTLLGGQ 324
Query: 299 TIRV 302
+R+
Sbjct: 325 NVRL 328
>Medtr4g086600.1 | polyadenylate-binding protein RBP47B | HC |
chr4:33938062-33942519 | 20130731
Length = 454
Score = 91.7 bits (226), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 97/187 (51%), Gaps = 15/187 (8%)
Query: 135 LFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDKL 194
+++G+L + D L F G V A+VI N++T QS G+GFV T AEK +
Sbjct: 118 IWLGDLHHWMDETFLHNCFAHTGEVASAKVIRNKQTGQSEGYGFVEFYTRAMAEKVLQNF 177
Query: 195 NGY-----DFGGRL--LTVNKAAPRGSRPERAPRSFDAQPAFRVYVGNLPWDFDNSQLEQ 247
NG D RL T + A G R RS +A V+VG+L D ++ L++
Sbjct: 178 NGTMMPNTDQAFRLNWATFSAAGGGGER-----RSSEATSDLSVFVGDLAIDVTDAMLQE 232
Query: 248 VF-SEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQSLGGRTIRVNVAE 306
F S+ + A+VV D TGRS+G+GFV DE+E A+ ++G R +RV VA
Sbjct: 233 TFASKFSSIKGAKVVIDSNTGRSKGYGFVRFGDESERTRAMTEMNGVYCSSRPMRVGVAT 292
Query: 307 DRPRRSF 313
P++++
Sbjct: 293 --PKKTY 297
>Medtr3g099590.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:45657608-45655484 | 20130731
Length = 290
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 98/175 (56%), Gaps = 14/175 (8%)
Query: 134 KLFVGNLPYDADGHKLAELFNQVGTVDLAEV-IYNRETDQSRGFGFVTMKTVEDAEKAVD 192
+L N+P+ + + LF + G V E+ +YN+ +++RG FV M + E+A +A++
Sbjct: 90 RLLAQNVPWSSTTEDVRSLFEKYGKVLHVELSMYNK--NRNRGLAFVEMGSPEEASEALN 147
Query: 193 KLNGYDFGGRLLTVNKAAPRGSRP----ERAPRSFDAQPAFRVYVGNLPWDFDNSQLEQV 248
L Y+F GR++ + A P+ + ER P +++ ++V N P++ + +++
Sbjct: 148 SLQSYEFDGRIINIQYAKPKKEKIPPPVERKPITYN------LFVANFPYEARSKDVKEF 201
Query: 249 F-SEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQSLGGRTIRV 302
F S GKVVSA V++ R G+GFV+ + E ++A+A G++ GR +RV
Sbjct: 202 FDSGTGKVVSAEVIFHENPRRPSGYGFVSYKSKKEADEALAEFQGKNFMGRPLRV 256
>Medtr3g099590.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:45657608-45655484 | 20130731
Length = 290
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 98/175 (56%), Gaps = 14/175 (8%)
Query: 134 KLFVGNLPYDADGHKLAELFNQVGTVDLAEV-IYNRETDQSRGFGFVTMKTVEDAEKAVD 192
+L N+P+ + + LF + G V E+ +YN+ +++RG FV M + E+A +A++
Sbjct: 90 RLLAQNVPWSSTTEDVRSLFEKYGKVLHVELSMYNK--NRNRGLAFVEMGSPEEASEALN 147
Query: 193 KLNGYDFGGRLLTVNKAAPRGSRP----ERAPRSFDAQPAFRVYVGNLPWDFDNSQLEQV 248
L Y+F GR++ + A P+ + ER P +++ ++V N P++ + +++
Sbjct: 148 SLQSYEFDGRIINIQYAKPKKEKIPPPVERKPITYN------LFVANFPYEARSKDVKEF 201
Query: 249 F-SEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQSLGGRTIRV 302
F S GKVVSA V++ R G+GFV+ + E ++A+A G++ GR +RV
Sbjct: 202 FDSGTGKVVSAEVIFHENPRRPSGYGFVSYKSKKEADEALAEFQGKNFMGRPLRV 256
>Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3990787-3988732 | 20130731
Length = 148
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 58/81 (71%)
Query: 230 RVYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAA 289
++YVG + + D++ L + F+ +G V+ ARV+ DRE GRS+GFGFVT + E + A+ A
Sbjct: 41 KLYVGGISYSTDDAGLRESFARYGDVLDARVIIDREQGRSKGFGFVTFATSEEASAALQA 100
Query: 290 LDGQSLGGRTIRVNVAEDRPR 310
+D Q L GRT+RVN A++RPR
Sbjct: 101 MDNQELHGRTVRVNYAQERPR 121
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 46/80 (57%)
Query: 133 AKLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVD 192
AKL+VG + Y D L E F + G V A VI +RE +S+GFGFVT T E+A A+
Sbjct: 40 AKLYVGGISYSTDDAGLRESFARYGDVLDARVIIDREQGRSKGFGFVTFATSEEASAALQ 99
Query: 193 KLNGYDFGGRLLTVNKAAPR 212
++ + GR + VN A R
Sbjct: 100 AMDNQELHGRTVRVNYAQER 119
>Medtr7g102730.1 | polyadenylate-binding protein | HC |
chr7:41652502-41656607 | 20130731
Length = 629
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 90/177 (50%), Gaps = 6/177 (3%)
Query: 135 LFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDKL 194
+FV NL D L ++F + G + ++V+ + E +S+G+GFV +T E A A+++L
Sbjct: 100 VFVKNLAESIDNSGLEDMFKKFGNILSSKVVMS-EDGKSKGYGFVQFETEESANAAIERL 158
Query: 195 NGYDFGGRLLTVNKAAPRGSRPERAPRSFDAQPAFRVYVGNLPWDFDNSQLEQVFSEHGK 254
NGY G + + V K + R P + +Y+ NL D + L + FS GK
Sbjct: 159 NGYLVGDKQIYVGKFVKKSDRISSGPDTRYTN----LYMKNLDLDISETLLREKFSSFGK 214
Query: 255 VVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQSLGGRTIRVNVAEDRPRR 311
++S V D G S+GFGFV + + A+ ++G LG + + V A+ + R
Sbjct: 215 IISLAVAKD-SNGMSKGFGFVNFDNPEDAKRAMETMNGLQLGSKILYVARAQKKAER 270
Score = 81.6 bits (200), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 91/185 (49%), Gaps = 10/185 (5%)
Query: 135 LFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDKL 194
L++ NL D L E F+ G + ++ + S+GFGFV EDA++A++ +
Sbjct: 191 LYMKNLDLDISETLLREKFSSFGKI-ISLAVAKDSNGMSKGFGFVNFDNPEDAKRAMETM 249
Query: 195 NGYDFGGRLLTVNKAAPRGSRPERAPRSFDAQ--------PAFRVYVGNLPWDFDNSQLE 246
NG G ++L V +A + R + + F+ + +YV N+ + + L
Sbjct: 250 NGLQLGSKILYVARAQKKAEREQILHQQFEEKRKEQVLKYKGSNIYVKNIDDNVSDEGLR 309
Query: 247 QVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQSLGGRTIRVNVAE 306
FS G + SA+++ D + G S+GFGFV S E N A+ + G G+ + V++A+
Sbjct: 310 DHFSVCGTITSAKIMRD-DKGISKGFGFVCFSTPEEANKAVNSFHGFMFHGKPLYVSLAQ 368
Query: 307 DRPRR 311
+ R
Sbjct: 369 RKEDR 373
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 86/172 (50%), Gaps = 13/172 (7%)
Query: 133 AKLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVD 192
A L+VG+L D +L + F+ T+ + + + +S +G+V + DA +A++
Sbjct: 10 ASLYVGDLHPDLSDSQLHDAFSDFKTLASVRICRDSSSGKSLCYGYVNFLSPHDAIRAIE 69
Query: 193 KLNGYDFGGRLLTVNKAAPRGSRPERAPRSFDAQPAF--RVYVGNLPWDFDNSQLEQVFS 250
N G+ + V SR R DA+ + V+V NL DNS LE +F
Sbjct: 70 VKNHSTLNGKAIRV-----MWSR-----RDPDARKSCIGNVFVKNLAESIDNSGLEDMFK 119
Query: 251 EHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQSLGGRTIRV 302
+ G ++S++VV E G+S+G+GFV E N AI L+G +G + I V
Sbjct: 120 KFGNILSSKVVMS-EDGKSKGYGFVQFETEESANAAIERLNGYLVGDKQIYV 170
>Medtr4g070140.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26401562-26402849 | 20130731
Length = 190
Score = 88.6 bits (218), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 55/78 (70%)
Query: 229 FRVYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIA 288
+R +VG L W D+ LEQ FS+ G++ ++V+ DRETGRSRGFGFVT ++E + DAI
Sbjct: 8 YRCFVGGLAWATDSQALEQAFSKFGEITDSKVINDRETGRSRGFGFVTFAEEKSMRDAIE 67
Query: 289 ALDGQSLGGRTIRVNVAE 306
++GQ + GR I VN A+
Sbjct: 68 EMNGQDIDGRNITVNEAQ 85
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 48/76 (63%)
Query: 134 KLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDK 193
+ FVG L + D L + F++ G + ++VI +RET +SRGFGFVT + A+++
Sbjct: 9 RCFVGGLAWATDSQALEQAFSKFGEITDSKVINDRETGRSRGFGFVTFAEEKSMRDAIEE 68
Query: 194 LNGYDFGGRLLTVNKA 209
+NG D GR +TVN+A
Sbjct: 69 MNGQDIDGRNITVNEA 84
>Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527062-45523373 | 20130731
Length = 276
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 63/101 (62%), Gaps = 8/101 (7%)
Query: 218 RAPRSFDAQPAFRVYVGNL--------PWDFDNSQLEQVFSEHGKVVSARVVYDRETGRS 269
+A R + P ++++G + + D + L + FS +G+V+ AR++ DRETGRS
Sbjct: 31 QAIRCMCSAPTTKLFIGGILHLSVAGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRS 90
Query: 270 RGFGFVTMSDEAELNDAIAALDGQSLGGRTIRVNVAEDRPR 310
RGFGF+T + E + AI ALDGQ L GR +RVN A +RPR
Sbjct: 91 RGFGFITFNSVEEASSAIQALDGQDLHGRRVRVNYANERPR 131
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 50/87 (57%), Gaps = 8/87 (9%)
Query: 134 KLFVGNL--------PYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVE 185
KLF+G + Y D + L E F++ G V A +I +RET +SRGFGF+T +VE
Sbjct: 43 KLFIGGILHLSVAGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVE 102
Query: 186 DAEKAVDKLNGYDFGGRLLTVNKAAPR 212
+A A+ L+G D GR + VN A R
Sbjct: 103 EASSAIQALDGQDLHGRRVRVNYANER 129
>Medtr6g040070.1 | DEAD/DEAH-box helicase | HC |
chr6:14397151-14388452 | 20130731
Length = 784
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 96/189 (50%), Gaps = 14/189 (7%)
Query: 135 LFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDKL 194
++V NL L +LF+ G + A VI E S+ FGFV ++ + A AV+KL
Sbjct: 107 VYVKNLLETDTDEDLKKLFSTYGVITSA-VIMKDENGNSKCFGFVNFQSPDSAAAAVEKL 165
Query: 195 NGYDFG-GRLLTVNKAAPRGSRPERAPRSFDAQPAFR--------VYVGNLPWDFDNSQL 245
NG G++L V +A + R F+ + R +Y+ NL ++ +L
Sbjct: 166 NGTTTNDGKVLYVGRAQRKCEREAELRAKFEQEKIKRYEKLQGANLYLKNLDESINDEKL 225
Query: 246 EQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQSLGGRTIRVNVA 305
+++FSE G + S +V++D G S+GFGFV S E + AI + G+ +G + + V VA
Sbjct: 226 KEMFSEFGTITSCKVMFDAH-GHSKGFGFVAFSTSEEASKAINGMSGKIIGQKPLYVVVA 284
Query: 306 ---EDRPRR 311
EDR R
Sbjct: 285 QRKEDRKTR 293
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 87/181 (48%), Gaps = 10/181 (5%)
Query: 133 AKLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVD 192
A +FV NL D L + F GTV +V + +S G+GFV E A+ A++
Sbjct: 15 ANVFVKNLDTSIDNKVLHDTFATFGTVLSCKVALD-SNGKSLGYGFVQYDNHESAKCAIE 73
Query: 193 KLNGYDFGGRLLTVNKAAPRGSRPERAPRSFDAQPAF-RVYVGNLPWDFDNSQLEQVFSE 251
KL+G +L +K A G R RS + P F VYV NL + L+++FS
Sbjct: 74 KLDG------MLIKDKKAFVGYFIRRQERSENGSPKFTNVYVKNLLETDTDEDLKKLFST 127
Query: 252 HGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQSLG-GRTIRVNVAEDRPR 310
+G + SA ++ D E G S+ FGFV A+ L+G + G+ + V A+ +
Sbjct: 128 YGVITSAVIMKD-ENGNSKCFGFVNFQSPDSAAAAVEKLNGTTTNDGKVLYVGRAQRKCE 186
Query: 311 R 311
R
Sbjct: 187 R 187
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 133 AKLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVD 192
A L++ NL + KL E+F++ GT+ +V+++ S+GFGFV T E+A KA++
Sbjct: 209 ANLYLKNLDESINDEKLKEMFSEFGTITSCKVMFDAH-GHSKGFGFVAFSTSEEASKAIN 267
Query: 193 KLNGYDFGGRLLTVNKAAPRGSRPERAPRSF 223
++G G + L V A + R R F
Sbjct: 268 GMSGKIIGQKPLYVVVAQRKEDRKTRLQAQF 298
>Medtr3g109090.1 | nucleolysin TIAR-like protein | HC |
chr3:50427006-50436985 | 20130731
Length = 440
Score = 85.1 bits (209), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 84/171 (49%), Gaps = 11/171 (6%)
Query: 135 LFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDKL 194
++VGN+ + LAE+F G + ++I ++ +GFV A A+ L
Sbjct: 62 VYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKSS----YGFVDYHDRASAALAIMTL 117
Query: 195 NGYDFGGRLLTVNKAAPRGSRPERAPRSFDAQPAFRVYVGNLPWDFDNSQLEQVFSEHGK 254
+G G+ L VN A SR D F V+VG+L + ++ L FS +
Sbjct: 118 HGRQLYGQALKVNWAYANSSRE-------DTSGHFNVFVGDLSPEVTDATLFACFSVYTT 170
Query: 255 VVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQSLGGRTIRVNVA 305
ARV++D +TGRS+G+GFV+ D + AI + G+ LG R IR N A
Sbjct: 171 CSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWA 221
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 89/195 (45%), Gaps = 30/195 (15%)
Query: 135 LFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDKL 194
+FVG+L + L F+ T A V+++ +T +S+G+GFV+ + +DA+ A++ +
Sbjct: 147 VFVGDLSPEVTDATLFACFSVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDM 206
Query: 195 NGYDFGGRLLTVN---KAAPRGSRPERAPRSFDA----------------------QPAF 229
G G R + N K A S E+ S +A P++
Sbjct: 207 TGKWLGNRQIRCNWATKGAGGSSNEEKINDSQNAVVLTNGSSDGGQDNSNEDAPENNPSY 266
Query: 230 -RVYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIA 288
VYVGNLP D ++L F + A V+ + +GFGFV + E AI
Sbjct: 267 TTVYVGNLPHDVTQAELHCQF----HALGAGVLEEVRVQSGKGFGFVRYNTHEEAAMAIQ 322
Query: 289 ALDGQSLGGRTIRVN 303
+G+ + G+T++ +
Sbjct: 323 MANGRPVRGKTMKCS 337
>Medtr3g109090.2 | nucleolysin TIAR-like protein | HC |
chr3:50426599-50437301 | 20130731
Length = 440
Score = 85.1 bits (209), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 84/171 (49%), Gaps = 11/171 (6%)
Query: 135 LFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDKL 194
++VGN+ + LAE+F G + ++I ++ +GFV A A+ L
Sbjct: 62 VYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKSS----YGFVDYHDRASAALAIMTL 117
Query: 195 NGYDFGGRLLTVNKAAPRGSRPERAPRSFDAQPAFRVYVGNLPWDFDNSQLEQVFSEHGK 254
+G G+ L VN A SR D F V+VG+L + ++ L FS +
Sbjct: 118 HGRQLYGQALKVNWAYANSSRE-------DTSGHFNVFVGDLSPEVTDATLFACFSVYTT 170
Query: 255 VVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQSLGGRTIRVNVA 305
ARV++D +TGRS+G+GFV+ D + AI + G+ LG R IR N A
Sbjct: 171 CSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWA 221
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 89/195 (45%), Gaps = 30/195 (15%)
Query: 135 LFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDKL 194
+FVG+L + L F+ T A V+++ +T +S+G+GFV+ + +DA+ A++ +
Sbjct: 147 VFVGDLSPEVTDATLFACFSVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDM 206
Query: 195 NGYDFGGRLLTVN---KAAPRGSRPERAPRSFDA----------------------QPAF 229
G G R + N K A S E+ S +A P++
Sbjct: 207 TGKWLGNRQIRCNWATKGAGGSSNEEKINDSQNAVVLTNGSSDGGQDNSNEDAPENNPSY 266
Query: 230 -RVYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIA 288
VYVGNLP D ++L F + A V+ + +GFGFV + E AI
Sbjct: 267 TTVYVGNLPHDVTQAELHCQF----HALGAGVLEEVRVQSGKGFGFVRYNTHEEAAMAIQ 322
Query: 289 ALDGQSLGGRTIRVN 303
+G+ + G+T++ +
Sbjct: 323 MANGRPVRGKTMKCS 337
>Medtr3g109090.3 | nucleolysin TIAR-like protein | HC |
chr3:50426665-50437301 | 20130731
Length = 424
Score = 85.1 bits (209), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 84/171 (49%), Gaps = 11/171 (6%)
Query: 135 LFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDKL 194
++VGN+ + LAE+F G + ++I ++ +GFV A A+ L
Sbjct: 46 VYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKSS----YGFVDYHDRASAALAIMTL 101
Query: 195 NGYDFGGRLLTVNKAAPRGSRPERAPRSFDAQPAFRVYVGNLPWDFDNSQLEQVFSEHGK 254
+G G+ L VN A SR D F V+VG+L + ++ L FS +
Sbjct: 102 HGRQLYGQALKVNWAYANSSRE-------DTSGHFNVFVGDLSPEVTDATLFACFSVYTT 154
Query: 255 VVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQSLGGRTIRVNVA 305
ARV++D +TGRS+G+GFV+ D + AI + G+ LG R IR N A
Sbjct: 155 CSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWA 205
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 89/195 (45%), Gaps = 30/195 (15%)
Query: 135 LFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDKL 194
+FVG+L + L F+ T A V+++ +T +S+G+GFV+ + +DA+ A++ +
Sbjct: 131 VFVGDLSPEVTDATLFACFSVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDM 190
Query: 195 NGYDFGGRLLTVN---KAAPRGSRPERAPRSFDA----------------------QPAF 229
G G R + N K A S E+ S +A P++
Sbjct: 191 TGKWLGNRQIRCNWATKGAGGSSNEEKINDSQNAVVLTNGSSDGGQDNSNEDAPENNPSY 250
Query: 230 -RVYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIA 288
VYVGNLP D ++L F + A V+ + +GFGFV + E AI
Sbjct: 251 TTVYVGNLPHDVTQAELHCQF----HALGAGVLEEVRVQSGKGFGFVRYNTHEEAAMAIQ 306
Query: 289 ALDGQSLGGRTIRVN 303
+G+ + G+T++ +
Sbjct: 307 MANGRPVRGKTMKCS 321
>Medtr3g101370.2 | polyadenylate-binding protein RBP47C | HC |
chr3:46662442-46658399 | 20130731
Length = 300
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 94/188 (50%), Gaps = 23/188 (12%)
Query: 135 LFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDKL 194
L+VG+L + D + L F G + +VI N++T Q+ G+GFV + AEK +
Sbjct: 95 LWVGDLHHWMDENYLHRCFASTGEIFSIKVIRNKQTCQTEGYGFVEFTSHGTAEKVLQT- 153
Query: 195 NGYDFGGRLLTVNKAAPRGSRPERA---------PRSFDAQPAFRVYVGNLPWDFDNSQL 245
+ G L+ P +P R + D P ++VG+L D ++ L
Sbjct: 154 ----YAGMLM------PNTEQPFRLNWATFSTGDHKRSDNVPDLSIFVGDLAADVTDTML 203
Query: 246 EQVFSE-HGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQSLGGRTIRVNV 304
+ FS+ + V +A+VV+D TGRS+G+GFV D+ E + A+ ++G R +R+
Sbjct: 204 LETFSDKYPSVKAAKVVFDANTGRSKGYGFVRFGDDGERSKALNEMNGVFCSSRAMRIGA 263
Query: 305 AEDRPRRS 312
A PR+S
Sbjct: 264 AT--PRKS 269
>Medtr1g061870.1 | polyadenylate-binding plant protein, putative |
HC | chr1:27029234-27025443 | 20130731
Length = 522
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 96/184 (52%), Gaps = 11/184 (5%)
Query: 135 LFVGNL-PYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDK 193
L+V NL P + H L E F+ G + ++ I E QS+GFGFV + +DA +A++
Sbjct: 196 LYVKNLDPVVTEKH-LGEKFSSFGKI-VSLAIKKDENGQSKGFGFVNYDSPDDARRAMEA 253
Query: 194 LNGYDFGGRLLTVNKAAPRGSRPERAPRSFDAQP----AFRVYVGNLPWDFDNSQLEQVF 249
++G FG ++L V +A + R + F + +YV N+ + +L F
Sbjct: 254 MDGSQFGSKILYVARAQKKVEREQILHHLFVEKGLKHMGSNIYVKNIDTSVGDEELRDHF 313
Query: 250 SEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQSLGGRTIRVNVA---E 306
S G+V+SA+V+ D + G S+GFGFV S E +++ +G G+ + V+ A E
Sbjct: 314 SACGEVLSAKVMRD-DKGTSKGFGFVCFSTVVEAFKSMSCFNGCMFHGKPLYVDFAQKKE 372
Query: 307 DRPR 310
DR R
Sbjct: 373 DRKR 376
Score = 78.6 bits (192), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 86/177 (48%), Gaps = 6/177 (3%)
Query: 135 LFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDKL 194
+FV NL D L +LF + G + L+ I E +S+GFG++ + E A A+ K+
Sbjct: 105 VFVKNLAASIDNVGLHDLFQKYGNI-LSSKIARSEDGKSKGFGYIQFDSEESANVAIQKM 163
Query: 195 NGYDFGGRLLTVNKAAPRGSRPERAPRSFDAQPAFRVYVGNLPWDFDNSQLEQVFSEHGK 254
NG + + V K + ER+ DA+ +YV NL L + FS GK
Sbjct: 164 NGSTVRDKQIYVGKFI---RKSERSLPDLDAKFT-NLYVKNLDPVVTEKHLGEKFSSFGK 219
Query: 255 VVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQSLGGRTIRVNVAEDRPRR 311
+VS + D E G+S+GFGFV + A+ A+DG G + + V A+ + R
Sbjct: 220 IVSLAIKKD-ENGQSKGFGFVNYDSPDDARRAMEAMDGSQFGSKILYVARAQKKVER 275
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 91/183 (49%), Gaps = 13/183 (7%)
Query: 133 AKLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVD 192
A L+VG+L D +L + F++ T+ A V + T +S +G+V + + ++A +A++
Sbjct: 15 ATLYVGDLHSDVTDAQLYKAFSEFNTLISARVCKDSATGKSLCYGYVNLSSHQEAIRAIE 74
Query: 193 KLNGYDFGGRLLTVNKAAPRGSRPERAPRSFDAQPAFR--VYVGNLPWDFDNSQLEQVFS 250
N G+++ R R DA+ + + V+V NL DN L +F
Sbjct: 75 LKNHSSLNGKVI----------RVMWLSRDADARKSGKGNVFVKNLAASIDNVGLHDLFQ 124
Query: 251 EHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQSLGGRTIRVNVAEDRPR 310
++G ++S+++ E G+S+GFG++ E N AI ++G ++ + I V +
Sbjct: 125 KYGNILSSKIARS-EDGKSKGFGYIQFDSEESANVAIQKMNGSTVRDKQIYVGKFIRKSE 183
Query: 311 RSF 313
RS
Sbjct: 184 RSL 186
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 46/78 (58%)
Query: 225 AQPAFRVYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELN 284
A PA +YVG+L D ++QL + FSE ++SARV D TG+S +G+V +S E
Sbjct: 11 ASPAATLYVGDLHSDVTDAQLYKAFSEFNTLISARVCKDSATGKSLCYGYVNLSSHQEAI 70
Query: 285 DAIAALDGQSLGGRTIRV 302
AI + SL G+ IRV
Sbjct: 71 RAIELKNHSSLNGKVIRV 88
>Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986546-3983001 | 20130731
Length = 253
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 57/84 (67%)
Query: 230 RVYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAA 289
++++G + + D + L + FS +G V+ A+++ DR+TGRSRGFGF+T + E + A+ A
Sbjct: 41 KLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSALQA 100
Query: 290 LDGQSLGGRTIRVNVAEDRPRRSF 313
+D + L GRT+RVN A +R R F
Sbjct: 101 MDNKELDGRTVRVNYATERARPGF 124
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Query: 133 AKLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVD 192
AKLF+G + Y D L E F++ G V A++I +R+T +SRGFGF+T T E+A A+
Sbjct: 40 AKLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSALQ 99
Query: 193 KLNGYDFGGRLLTVNKAAPRGSRP 216
++ + GR + VN A R +RP
Sbjct: 100 AMDNKELDGRTVRVNYATER-ARP 122
>Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986488-3983001 | 20130731
Length = 253
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 57/84 (67%)
Query: 230 RVYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAA 289
++++G + + D + L + FS +G V+ A+++ DR+TGRSRGFGF+T + E + A+ A
Sbjct: 41 KLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSALQA 100
Query: 290 LDGQSLGGRTIRVNVAEDRPRRSF 313
+D + L GRT+RVN A +R R F
Sbjct: 101 MDNKELDGRTVRVNYATERARPGF 124
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Query: 133 AKLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVD 192
AKLF+G + Y D L E F++ G V A++I +R+T +SRGFGF+T T E+A A+
Sbjct: 40 AKLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSALQ 99
Query: 193 KLNGYDFGGRLLTVNKAAPRGSRP 216
++ + GR + VN A R +RP
Sbjct: 100 AMDNKELDGRTVRVNYATER-ARP 122
>Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:36253866-36255120 | 20130731
Length = 135
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 53/81 (65%)
Query: 230 RVYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAA 289
+++VG L W D L+ FS G V R+VYD+++GR+RGFGFV S+E A A
Sbjct: 37 KLFVGGLSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRARGFGFVIFSNEDAAKSAKDA 96
Query: 290 LDGQSLGGRTIRVNVAEDRPR 310
+DG++L GR +R+N A ++PR
Sbjct: 97 MDGKALLGRPLRINFALEKPR 117
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Query: 134 KLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDK 193
KLFVG L + D L + F+ G V ++Y++++ ++RGFGFV + A+ A D
Sbjct: 37 KLFVGGLSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRARGFGFVIFSNEDAAKSAKDA 96
Query: 194 LNGYDFGGRLLTVNKA--APRGSRPERAPR 221
++G GR L +N A PRG P PR
Sbjct: 97 MDGKALLGRPLRINFALEKPRGI-PVVVPR 125
>Medtr3g101370.1 | polyadenylate-binding protein RBP47C | HC |
chr3:46662442-46658399 | 20130731
Length = 420
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 94/188 (50%), Gaps = 23/188 (12%)
Query: 135 LFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDKL 194
L+VG+L + D + L F G + +VI N++T Q+ G+GFV + AEK +
Sbjct: 95 LWVGDLHHWMDENYLHRCFASTGEIFSIKVIRNKQTCQTEGYGFVEFTSHGTAEKVLQT- 153
Query: 195 NGYDFGGRLLTVNKAAPRGSRPERA---------PRSFDAQPAFRVYVGNLPWDFDNSQL 245
+ G L+ P +P R + D P ++VG+L D ++ L
Sbjct: 154 ----YAGMLM------PNTEQPFRLNWATFSTGDHKRSDNVPDLSIFVGDLAADVTDTML 203
Query: 246 EQVFSE-HGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQSLGGRTIRVNV 304
+ FS+ + V +A+VV+D TGRS+G+GFV D+ E + A+ ++G R +R+
Sbjct: 204 LETFSDKYPSVKAAKVVFDANTGRSKGYGFVRFGDDGERSKALNEMNGVFCSSRAMRIGA 263
Query: 305 AEDRPRRS 312
A PR+S
Sbjct: 264 AT--PRKS 269
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 92/188 (48%), Gaps = 15/188 (7%)
Query: 135 LFVGNLPYDADGHKLAELF-NQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDK 193
+FVG+L D L E F ++ +V A+V+++ T +S+G+GFV + KA+++
Sbjct: 189 IFVGDLAADVTDTMLLETFSDKYPSVKAAKVVFDANTGRSKGYGFVRFGDDGERSKALNE 248
Query: 194 LNGYDFGGRLLTVNKAAPRGSRPERAPRSFDAQPA--------FRVYVGNLPWDFDNSQL 245
+NG R + + A PR S + + P+ ++VG L L
Sbjct: 249 MNGVFCSSRAMRIGAATPRKSSGYQQGGQSNGTPSQSDTDSTNTTIFVGGLDPSATAEDL 308
Query: 246 EQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQSLGGRTIRVNVA 305
Q FS++G++VS ++ +G GFV ++ +A+ L+G ++G +T+R++
Sbjct: 309 RQPFSQYGEIVSVKIPV------GKGCGFVQFANRNNAEEALQKLNGTTVGKQTVRLSWG 362
Query: 306 EDRPRRSF 313
+ + F
Sbjct: 363 RNPANKQF 370
>Medtr6g040190.1 | polyadenylate-binding protein | LC |
chr6:14408733-14404765 | 20130731
Length = 623
Score = 81.6 bits (200), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 95/186 (51%), Gaps = 11/186 (5%)
Query: 135 LFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDKL 194
++V NL L +LFN G + + +I + S+ FGFV ++ + A AV+KL
Sbjct: 202 VYVKNLSESYTYEDLKQLFNSFGVIT-SVLIMKYDNGNSKCFGFVNFQSSDSAATAVEKL 260
Query: 195 NGYDFG-GRLLTVNKAAPRGSRPERAPRSFDAQPAFR--------VYVGNLPWDFDNSQL 245
NG G++L V +A + R F+ + R +Y+ N+ + +L
Sbjct: 261 NGSTTNDGKVLFVGRAQKKSEREAELKAFFEQEKLKRYEKFQGANLYLKNIDKSLNEEKL 320
Query: 246 EQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQSLGGRTIRVNVA 305
+++FSE G + S +V+ D GRS+G GFV + E + AI ++G+ +G + + V+VA
Sbjct: 321 KELFSEFGTITSCKVMSDAR-GRSKGVGFVAFTTPEEASKAIDEMNGKIIGQKPVYVSVA 379
Query: 306 EDRPRR 311
+ + R
Sbjct: 380 QRKEER 385
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 78/174 (44%), Gaps = 21/174 (12%)
Query: 135 LFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDKL 194
L+VG+L + + +L +LF+Q+ V V ++ T S G+G+V DA A++ L
Sbjct: 27 LYVGDLQGNVNDAQLYDLFSQIAPVISVRVCRDQMTQSSLGYGYVNYSNARDAANAMENL 86
Query: 195 NGYDFGGRLLTVNKAAPRGSRPERAPRSFDAQPAFR------VYVGNLPWDFDNSQLEQV 248
N P +P R S P R +++ NL DN L +
Sbjct: 87 N-------------YVPLNGKPIRIMFS-HRDPLIRKTGFANLFIKNLETSIDNKALHET 132
Query: 249 FSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQSLGGRTIRV 302
FS G V+S +V D G S+G GFV ++ +AI LDG + + + V
Sbjct: 133 FSVFGNVLSCKVAMD-SNGHSKGHGFVQFDNDQSAKNAIEKLDGMLMNDKKVYV 185
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 70/144 (48%), Gaps = 13/144 (9%)
Query: 133 AKLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVD 192
A L++ N+ + KL ELF++ GT+ +V+ + +S+G GFV T E+A KA+D
Sbjct: 304 ANLYLKNIDKSLNEEKLKELFSEFGTITSCKVMSDAR-GRSKGVGFVAFTTPEEASKAID 362
Query: 193 KLNGYDFGGRLLTVNKAAPRGSRPERAPRSFDAQPAFRVYVGNLPWDFDNSQL--EQVFS 250
++NG G + + V+ A + R + F A +V GN + +L +Q +
Sbjct: 363 EMNGKIIGQKPVYVSVAQRKEERKAQLQAHFS---AIQVSGGNAGYHSSVQRLAPQQFYY 419
Query: 251 EHGKVVSARVVYDRETGRSRGFGF 274
E G +D + G+GF
Sbjct: 420 EQG-------TFDLMAPQPNGYGF 436
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 46/79 (58%)
Query: 231 VYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAAL 290
+YVG+L + +++QL +FS+ V+S RV D+ T S G+G+V S+ + +A+ L
Sbjct: 27 LYVGDLQGNVNDAQLYDLFSQIAPVISVRVCRDQMTQSSLGYGYVNYSNARDAANAMENL 86
Query: 291 DGQSLGGRTIRVNVAEDRP 309
+ L G+ IR+ + P
Sbjct: 87 NYVPLNGKPIRIMFSHRDP 105
>Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:37961723-37963823 | 20130731
Length = 146
Score = 81.6 bits (200), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 53/79 (67%), Gaps = 1/79 (1%)
Query: 230 RVYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAA 289
++++G L ++ D+ L F+ +G VV ARV+ DRETGRSRGFGFV + E A+ +
Sbjct: 37 KLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSAL-S 95
Query: 290 LDGQSLGGRTIRVNVAEDR 308
+DGQ L GR IRV+ A DR
Sbjct: 96 MDGQDLNGRNIRVSYANDR 114
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 133 AKLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVD 192
+KLF+G L Y+ D L + F G V A VI +RET +SRGFGFV + E A A+
Sbjct: 36 SKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSAL- 94
Query: 193 KLNGYDFGGRLLTVNKAAPR 212
++G D GR + V+ A R
Sbjct: 95 SMDGQDLNGRNIRVSYANDR 114
>Medtr2g013130.3 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr2:3477024-3485643 | 20130731
Length = 402
Score = 81.6 bits (200), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 91/196 (46%), Gaps = 30/196 (15%)
Query: 134 KLFVGNLPYDADGHKLAELFNQV------GTVDLAEVIYNRETDQSRGFGFVTMKTVEDA 187
+++VG LP A+ +A F+QV + + + N + + F FV M+TVE+A
Sbjct: 59 RVYVGGLPPFANEQSIASFFSQVMIAIGGNSAGSGDSVVNVYINHEKKFAFVEMRTVEEA 118
Query: 188 EKAVDKLNGYDFGGRLLTVNKAAPRGSRPERAPRSFDAQPAF------------------ 229
A+ L+G F G + V + P P A QP+
Sbjct: 119 SNAM-ALDGIVFEGVAVRVRR--PTDYNPSLAAVLGPCQPSANLNLSAVGLSAGTIGGAE 175
Query: 230 ---RVYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDA 286
R++VG LP+ F Q+ ++ G + S +V D+ETG S+G+GF D A + A
Sbjct: 176 GLDRIFVGGLPYYFTEVQMRELLQAFGPLRSFDIVRDKETGNSKGYGFCIYQDPAVTDIA 235
Query: 287 IAALDGQSLGGRTIRV 302
AAL+G +G +T+ V
Sbjct: 236 CAALNGLKMGDKTLTV 251
>Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22251454 | 20130731
Length = 478
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 83/179 (46%), Gaps = 9/179 (5%)
Query: 133 AKLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVD 192
KLF+G + +D D +L E F G V A ++ +R T ++RGFGFV AE+ +
Sbjct: 6 GKLFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAERVI- 64
Query: 193 KLNGYDFGGRLLTVNKAAPRGSRP--ERAPRSFDAQPA----FRVYVGNLPWDFDNSQLE 246
++ + GR + KA PR + R S P +++VG LP S +
Sbjct: 65 -IDKHIIDGRTVEAKKAVPRDDQQNINRQTGSVQGSPGPGRTKKIFVGGLPSTITESDFK 123
Query: 247 QVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQSLGGRTIRVNVA 305
F + G + V+YD T R RGFGF+T D E D + L G+ + V A
Sbjct: 124 MYFDQFGTITDVVVMYDHNTQRPRGFGFITY-DSEEAVDRVLYKTFHELNGKMVEVKRA 181
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Query: 230 RVYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAA 289
++++G + WD D +L++ F+ +G+V+ A ++ DR TGR+RGFGFV SD A I
Sbjct: 7 KLFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAERVI-- 64
Query: 290 LDGQSLGGRTIRVNVAEDR 308
+D + GRT+ A R
Sbjct: 65 IDKHIIDGRTVEAKKAVPR 83
>Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22250364 | 20130731
Length = 481
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 83/179 (46%), Gaps = 9/179 (5%)
Query: 133 AKLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVD 192
KLF+G + +D D +L E F G V A ++ +R T ++RGFGFV AE+ +
Sbjct: 6 GKLFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAERVI- 64
Query: 193 KLNGYDFGGRLLTVNKAAPRGSRP--ERAPRSFDAQPA----FRVYVGNLPWDFDNSQLE 246
++ + GR + KA PR + R S P +++VG LP S +
Sbjct: 65 -IDKHIIDGRTVEAKKAVPRDDQQNINRQTGSVQGSPGPGRTKKIFVGGLPSTITESDFK 123
Query: 247 QVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQSLGGRTIRVNVA 305
F + G + V+YD T R RGFGF+T D E D + L G+ + V A
Sbjct: 124 MYFDQFGTITDVVVMYDHNTQRPRGFGFITY-DSEEAVDRVLYKTFHELNGKMVEVKRA 181
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Query: 230 RVYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAA 289
++++G + WD D +L++ F+ +G+V+ A ++ DR TGR+RGFGFV SD A I
Sbjct: 7 KLFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAERVI-- 64
Query: 290 LDGQSLGGRTIRVNVAEDR 308
+D + GRT+ A R
Sbjct: 65 IDKHIIDGRTVEAKKAVPR 83
>Medtr1g097440.2 | polyadenylate-binding protein | HC |
chr1:43966152-43970565 | 20130731
Length = 646
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 94/186 (50%), Gaps = 11/186 (5%)
Query: 135 LFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDKL 194
++V N+ + L +LF G + A V+ + +SR FGFV ++ + A AV+KL
Sbjct: 211 VYVKNISEASTDEDLKQLFGPFGMITSATVMKD-ANGKSRCFGFVNFQSPDSAAAAVEKL 269
Query: 195 NGYDFGG-RLLTVNKAAPRGSRPERAPRSFDAQPAFR--------VYVGNLPWDFDNSQL 245
NG ++L V +A + R F+ + R +Y+ NL DF+ +L
Sbjct: 270 NGTAINDDKVLFVGRAQRKAERENELKAKFEQERISRYEKLQGANLYLKNLDDDFNEEKL 329
Query: 246 EQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQSLGGRTIRVNVA 305
+ +FSE G V S RV+ D G S+G GFV S E N A+ ++G+ +G + + V VA
Sbjct: 330 KDLFSEFGTVTSCRVMLDSH-GHSKGSGFVAFSTPEEANKALNEMNGKLVGRKPLFVAVA 388
Query: 306 EDRPRR 311
+ + R
Sbjct: 389 QRKEER 394
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 78/170 (45%), Gaps = 9/170 (5%)
Query: 133 AKLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVD 192
A L+VG+L + +L +LF+QV V V ++ S G+ +V +DA A +
Sbjct: 30 ASLYVGDLEGSVNEGQLFDLFSQVAQVVSIRVCRDQTRRSSLGYAYVNFTNAQDAANAKE 89
Query: 193 KLNGYDFGGRLLTVNKAAPRGSRPERAPRSFDAQPAFRVYVGNLPWDFDNSQLEQVFSEH 252
LN +N+ R +R P S + V++ NL D+ L F+
Sbjct: 90 LLN-------FTPLNEKPIRIMFSQRDP-SVRKSGSGNVFIKNLDTSIDHKALHDTFAAF 141
Query: 253 GKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQSLGGRTIRV 302
G V+S +V D G+S+G+GFV +E AI LDG + + + V
Sbjct: 142 GPVLSCKVALD-GNGQSKGYGFVQFDNEEAAKSAIKQLDGMLINDKQVYV 190
>Medtr1g097440.1 | polyadenylate-binding protein | HC |
chr1:43966161-43970565 | 20130731
Length = 646
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 94/186 (50%), Gaps = 11/186 (5%)
Query: 135 LFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDKL 194
++V N+ + L +LF G + A V+ + +SR FGFV ++ + A AV+KL
Sbjct: 211 VYVKNISEASTDEDLKQLFGPFGMITSATVMKD-ANGKSRCFGFVNFQSPDSAAAAVEKL 269
Query: 195 NGYDFGG-RLLTVNKAAPRGSRPERAPRSFDAQPAFR--------VYVGNLPWDFDNSQL 245
NG ++L V +A + R F+ + R +Y+ NL DF+ +L
Sbjct: 270 NGTAINDDKVLFVGRAQRKAERENELKAKFEQERISRYEKLQGANLYLKNLDDDFNEEKL 329
Query: 246 EQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQSLGGRTIRVNVA 305
+ +FSE G V S RV+ D G S+G GFV S E N A+ ++G+ +G + + V VA
Sbjct: 330 KDLFSEFGTVTSCRVMLDSH-GHSKGSGFVAFSTPEEANKALNEMNGKLVGRKPLFVAVA 388
Query: 306 EDRPRR 311
+ + R
Sbjct: 389 QRKEER 394
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 78/170 (45%), Gaps = 9/170 (5%)
Query: 133 AKLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVD 192
A L+VG+L + +L +LF+QV V V ++ S G+ +V +DA A +
Sbjct: 30 ASLYVGDLEGSVNEGQLFDLFSQVAQVVSIRVCRDQTRRSSLGYAYVNFTNAQDAANAKE 89
Query: 193 KLNGYDFGGRLLTVNKAAPRGSRPERAPRSFDAQPAFRVYVGNLPWDFDNSQLEQVFSEH 252
LN +N+ R +R P S + V++ NL D+ L F+
Sbjct: 90 LLN-------FTPLNEKPIRIMFSQRDP-SVRKSGSGNVFIKNLDTSIDHKALHDTFAAF 141
Query: 253 GKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQSLGGRTIRV 302
G V+S +V D G+S+G+GFV +E AI LDG + + + V
Sbjct: 142 GPVLSCKVALD-GNGQSKGYGFVQFDNEEAAKSAIKQLDGMLINDKQVYV 190
>Medtr2g013130.4 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr2:3477024-3485643 | 20130731
Length = 359
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 91/196 (46%), Gaps = 30/196 (15%)
Query: 134 KLFVGNLPYDADGHKLAELFNQV------GTVDLAEVIYNRETDQSRGFGFVTMKTVEDA 187
+++VG LP A+ +A F+QV + + + N + + F FV M+TVE+A
Sbjct: 16 RVYVGGLPPFANEQSIASFFSQVMIAIGGNSAGSGDSVVNVYINHEKKFAFVEMRTVEEA 75
Query: 188 EKAVDKLNGYDFGGRLLTVNKAAPRGSRPERAPRSFDAQPAF------------------ 229
A+ L+G F G + V + P P A QP+
Sbjct: 76 SNAM-ALDGIVFEGVAVRVRR--PTDYNPSLAAVLGPCQPSANLNLSAVGLSAGTIGGAE 132
Query: 230 ---RVYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDA 286
R++VG LP+ F Q+ ++ G + S +V D+ETG S+G+GF D A + A
Sbjct: 133 GLDRIFVGGLPYYFTEVQMRELLQAFGPLRSFDIVRDKETGNSKGYGFCIYQDPAVTDIA 192
Query: 287 IAALDGQSLGGRTIRV 302
AAL+G +G +T+ V
Sbjct: 193 CAALNGLKMGDKTLTV 208
>Medtr3g102040.1 | polyadenylate-binding protein | HC |
chr3:47012095-47003272 | 20130731
Length = 622
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 80/168 (47%), Gaps = 9/168 (5%)
Query: 135 LFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDKL 194
L+VG+L +D +L +LFNQ+G V + + + QS G+G+V DA KA+D L
Sbjct: 26 LYVGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQQSLGYGYVNFSNPHDAAKAMDVL 85
Query: 195 NGYDFGGRLLTVNKAAPRGSRPERAPRSFDAQPAFRVYVGNLPWDFDNSQLEQVFSEHGK 254
N +N R R P S A +++ NL D+ L FS G
Sbjct: 86 N-------FTPLNNKPIRIMYSHRDP-SVRKSGAANIFIKNLDRAIDHKALYDTFSIFGN 137
Query: 255 VVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQSLGGRTIRV 302
++S ++ D +G S+G+GFV +E AI L+G L + + V
Sbjct: 138 ILSCKIAMD-ASGLSKGYGFVQFENEESAQSAIDKLNGMLLNDKPVYV 184
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 12/186 (6%)
Query: 135 LFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETD-QSRGFGFVTMKTVEDAEKAVDK 193
++V NL L F + GT+ A V+ R+ D +S+ FGFV + + A +AV+
Sbjct: 205 VYVKNLSESVTDDDLKNTFGEYGTITSAVVM--RDVDGKSKCFGFVNFENADAAAEAVEA 262
Query: 194 LNGYDFGGRLLTVNKAAPRGSR----PERAPRSF----DAQPAFRVYVGNLPWDFDNSQL 245
LNG F + V KA + R ER +S D +Y+ NL + +L
Sbjct: 263 LNGKKFDDKEWYVGKALKKYERELELKERHEQSMKETVDKFYGANLYLKNLDDSVTDEKL 322
Query: 246 EQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQSLGGRTIRVNVA 305
++FSE G V S +++ D + G SRG GFV S E A+A ++G+ + G+ + V A
Sbjct: 323 SELFSEFGTVTSCKILRDPQ-GISRGSGFVAFSTPEEATRALAEMNGKMVAGKPLYVAPA 381
Query: 306 EDRPRR 311
+ + R
Sbjct: 382 QKKEER 387
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 45/79 (56%)
Query: 231 VYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAAL 290
+YVG+L D +SQL +F++ G+VVS R+ D + +S G+G+V S+ + A+ L
Sbjct: 26 LYVGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQQSLGYGYVNFSNPHDAAKAMDVL 85
Query: 291 DGQSLGGRTIRVNVAEDRP 309
+ L + IR+ + P
Sbjct: 86 NFTPLNNKPIRIMYSHRDP 104
>Medtr8g022050.1 | nucleolysin TIAR-like protein | HC |
chr8:7704241-7709952 | 20130731
Length = 427
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 83/171 (48%), Gaps = 11/171 (6%)
Query: 135 LFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDKL 194
++VGN+ L E+F G V+ ++ ++ +GF+ A A+ L
Sbjct: 64 VYVGNVHTQVTEPLLQEVFAGTGPVEGCKLFRKEKSS----YGFIHYFDRRSAALAILTL 119
Query: 195 NGYDFGGRLLTVNKAAPRGSRPERAPRSFDAQPAFRVYVGNLPWDFDNSQLEQVFSEHGK 254
NG G+ + VN A G R D + ++VG+L + ++ L FS +
Sbjct: 120 NGRHLFGQPIKVNWAYASGQRE-------DTSGHYNIFVGDLSPEVTDATLFACFSVYQS 172
Query: 255 VVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQSLGGRTIRVNVA 305
ARV++D++TGRSRGFGFV+ + + AI L G+ LG R IR N A
Sbjct: 173 CSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWA 223
>Medtr2g013130.1 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr2:3475903-3485643 | 20130731
Length = 522
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 92/199 (46%), Gaps = 30/199 (15%)
Query: 134 KLFVGNLPYDADGHKLAELFNQV------GTVDLAEVIYNRETDQSRGFGFVTMKTVEDA 187
+++VG LP A+ +A F+QV + + + N + + F FV M+TVE+A
Sbjct: 179 RVYVGGLPPFANEQSIASFFSQVMIAIGGNSAGSGDSVVNVYINHEKKFAFVEMRTVEEA 238
Query: 188 EKAVDKLNGYDFGGRLLTVNKAAPRGSRPERAPRSFDAQPAF------------------ 229
A+ L+G F G + V + P P A QP+
Sbjct: 239 SNAM-ALDGIVFEGVAVRVRR--PTDYNPSLAAVLGPCQPSANLNLSAVGLSAGTIGGAE 295
Query: 230 ---RVYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDA 286
R++VG LP+ F Q+ ++ G + S +V D+ETG S+G+GF D A + A
Sbjct: 296 GLDRIFVGGLPYYFTEVQMRELLQAFGPLRSFDIVRDKETGNSKGYGFCIYQDPAVTDIA 355
Query: 287 IAALDGQSLGGRTIRVNVA 305
AAL+G +G +T+ V A
Sbjct: 356 CAALNGLKMGDKTLTVRRA 374
>Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:42749843-42753184 | 20130731
Length = 493
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 84/179 (46%), Gaps = 9/179 (5%)
Query: 133 AKLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVD 192
KLF+G + +D + +L E F+ G V A ++ +R T ++RGFGFV A+ V
Sbjct: 6 GKLFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVADIVVQ 65
Query: 193 KLNGYDFGGRLLTVNKAAPRGSRP--ERAPRSFDAQPA----FRVYVGNLPWDFDNSQLE 246
+ + D GR++ KA PR + R S P +++VG L S +
Sbjct: 66 EKHNID--GRMVEAKKAVPRDDQNVLSRTSGSIHGSPGPGRTRKIFVGGLASTVTESDFK 123
Query: 247 QVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQSLGGRTIRVNVA 305
+ F + G + V+YD T R RGFGF+T D E D + L G+ + V A
Sbjct: 124 KYFDQFGTITDVVVMYDHNTQRPRGFGFITY-DSEEAVDQVLLKTFHELNGKMVEVKRA 181
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 230 RVYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAA 289
++++G + WD + +L + FS +G+V A ++ DR TGR+RGFGFV D A + I
Sbjct: 7 KLFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVAD--IVV 64
Query: 290 LDGQSLGGRTIRVNVAEDR 308
+ ++ GR + A R
Sbjct: 65 QEKHNIDGRMVEAKKAVPR 83
>Medtr2g013130.2 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr2:3475909-3485643 | 20130731
Length = 507
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 92/199 (46%), Gaps = 30/199 (15%)
Query: 134 KLFVGNLPYDADGHKLAELFNQV------GTVDLAEVIYNRETDQSRGFGFVTMKTVEDA 187
+++VG LP A+ +A F+QV + + + N + + F FV M+TVE+A
Sbjct: 164 RVYVGGLPPFANEQSIASFFSQVMIAIGGNSAGSGDSVVNVYINHEKKFAFVEMRTVEEA 223
Query: 188 EKAVDKLNGYDFGGRLLTVNKAAPRGSRPERAPRSFDAQPAF------------------ 229
A+ L+G F G + V + P P A QP+
Sbjct: 224 SNAM-ALDGIVFEGVAVRVRR--PTDYNPSLAAVLGPCQPSANLNLSAVGLSAGTIGGAE 280
Query: 230 ---RVYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDA 286
R++VG LP+ F Q+ ++ G + S +V D+ETG S+G+GF D A + A
Sbjct: 281 GLDRIFVGGLPYYFTEVQMRELLQAFGPLRSFDIVRDKETGNSKGYGFCIYQDPAVTDIA 340
Query: 287 IAALDGQSLGGRTIRVNVA 305
AAL+G +G +T+ V A
Sbjct: 341 CAALNGLKMGDKTLTVRRA 359
>Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:42749843-42754792 | 20130731
Length = 479
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 84/179 (46%), Gaps = 9/179 (5%)
Query: 133 AKLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVD 192
KLF+G + +D + +L E F+ G V A ++ +R T ++RGFGFV A+ V
Sbjct: 6 GKLFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVADIVVQ 65
Query: 193 KLNGYDFGGRLLTVNKAAPRGSRP--ERAPRSFDAQPA----FRVYVGNLPWDFDNSQLE 246
+ + D GR++ KA PR + R S P +++VG L S +
Sbjct: 66 EKHNID--GRMVEAKKAVPRDDQNVLSRTSGSIHGSPGPGRTRKIFVGGLASTVTESDFK 123
Query: 247 QVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQSLGGRTIRVNVA 305
+ F + G + V+YD T R RGFGF+T D E D + L G+ + V A
Sbjct: 124 KYFDQFGTITDVVVMYDHNTQRPRGFGFITY-DSEEAVDQVLLKTFHELNGKMVEVKRA 181
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 230 RVYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAA 289
++++G + WD + +L + FS +G+V A ++ DR TGR+RGFGFV D A + I
Sbjct: 7 KLFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVAD--IVV 64
Query: 290 LDGQSLGGRTIRVNVAEDR 308
+ ++ GR + A R
Sbjct: 65 QEKHNIDGRMVEAKKAVPR 83
>Medtr1g019150.1 | polyadenylate-binding protein | HC |
chr1:5708406-5713691 | 20130731
Length = 647
Score = 78.6 bits (192), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 85/168 (50%), Gaps = 9/168 (5%)
Query: 135 LFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDKL 194
L+VG+L + + +L +LFNQVG V V + T +S G+G+V +DA +A+D L
Sbjct: 34 LYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLATRRSLGYGYVNFTNPQDAARALDVL 93
Query: 195 NGYDFGGRLLTVNKAAPRGSRPERAPRSFDAQPAFRVYVGNLPWDFDNSQLEQVFSEHGK 254
N +N + R R P S + A +++ NL D+ L FS G+
Sbjct: 94 N-------FTPMNNKSIRVMYSHRDPSSRKSGTA-NIFIKNLDKTIDHKALHDTFSSFGQ 145
Query: 255 VVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQSLGGRTIRV 302
++S ++ D +G+S+G+GFV E +AI L+G + + + V
Sbjct: 146 IMSCKIATD-GSGQSKGYGFVQFEAEDSAQNAIDKLNGMLINDKQVFV 192
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 89/187 (47%), Gaps = 13/187 (6%)
Query: 135 LFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETD-QSRGFGFVTMKTVEDAEKAVDK 193
++V NL L F GT+ A ++ R+ D +S+ FGFV + EDA KAV+
Sbjct: 213 VYVKNLSESFTEDDLKNEFGAYGTITSAVLM--RDADGRSKCFGFVNFENAEDAAKAVEA 270
Query: 194 LNGYDFGGRLLTVNKAAPRGSRPERAPRSF---------DAQPAFRVYVGNLPWDFDNSQ 244
LNG + V KA + R + F D +Y+ NL + +
Sbjct: 271 LNGKKVDDKEWYVGKAQKKSEREQELKGRFEQTVKESVVDKFQGLNLYLKNLDDSITDEK 330
Query: 245 LEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQSLGGRTIRVNV 304
L+++FSE G + S +++ D G SRG GFV S E + A+ ++G+ + + + V V
Sbjct: 331 LKEMFSEFGTITSYKIMRD-PNGVSRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYVAV 389
Query: 305 AEDRPRR 311
A+ + R
Sbjct: 390 AQRKEDR 396
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 47/79 (59%)
Query: 231 VYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAAL 290
+YVG+L + ++SQL +F++ G+VVS RV D T RS G+G+V ++ + A+ L
Sbjct: 34 LYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLATRRSLGYGYVNFTNPQDAARALDVL 93
Query: 291 DGQSLGGRTIRVNVAEDRP 309
+ + ++IRV + P
Sbjct: 94 NFTPMNNKSIRVMYSHRDP 112
>Medtr1g020080.2 | polyadenylate-binding protein RBP47C | HC |
chr1:6171590-6176186 | 20130731
Length = 309
Score = 78.2 bits (191), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 88/181 (48%), Gaps = 10/181 (5%)
Query: 135 LFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDKL 194
L++G+L D L F G + +VI N+ + S G+GF + AEK +
Sbjct: 99 LWIGDLHSWMDESYLHRCFASTGEITSVKVIRNKHSGISEGYGFAEFFSHATAEKVLQ-- 156
Query: 195 NGYDFGGRLLTVNKAAPR--GSRPERAPRSFDAQPAFRVYVGNLPWDFDNSQLEQVFSE- 251
++ G L+ A R + + D ++VG+L D +S L + FS
Sbjct: 157 ---NYAGILMPNADQAFRLNWATFSTGDKGSDNVTDLSIFVGDLAADVTDSVLHETFSSS 213
Query: 252 HGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQSLGGRTIRVNVAEDRPRR 311
+ V +A+VVYD TGRS+G+GFV DE+E + A+ ++G R +R+ A PR+
Sbjct: 214 YPSVKAAKVVYDANTGRSKGYGFVRFGDESERSQAMTQMNGVYCSSRPMRIGAAT--PRK 271
Query: 312 S 312
S
Sbjct: 272 S 272
>Medtr1g115375.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:52075123-52071412 | 20130731
Length = 490
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 87/177 (49%), Gaps = 16/177 (9%)
Query: 134 KLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDK 193
K++VG +PY + + F GT+ + +T + RG ++ KT A++A+
Sbjct: 221 KVYVGGIPYYSSEDDIHSYFEGCGTITEINCMTFPDTGKFRGIAIISFKTEAAAKRAL-A 279
Query: 194 LNGYDFGGRLLTVNKAAPRGSRPERAPRSFDAQPAF-----RVYVGNLPWDFDNSQLEQV 248
L+G D GG L + +P +A ++ P R+YVG+L W+ +L +
Sbjct: 280 LDGADMGGLFLKI--------QPCKATQATRFTPEMKEGYNRIYVGSLSWEITEEELRKF 331
Query: 249 FSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQSLGGRTIRVNVA 305
FS + V + R+ D+ETG RG+ V D L A+ ALD L GR +R++ A
Sbjct: 332 FS-NCNVKAIRLGMDKETGEFRGYAHVDFGDSQSLKTAL-ALDQSVLFGRPVRISCA 386
>Medtr4g031680.1 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr4:10777189-10770195 | 20130731
Length = 574
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 92/199 (46%), Gaps = 30/199 (15%)
Query: 134 KLFVGNLPYDADGHKLAELFNQV------GTVDLAEVIYNRETDQSRGFGFVTMKTVEDA 187
+++VG LP A+ +A F+QV T + + N + + F FV M++VE+A
Sbjct: 241 RVYVGGLPPTANEQSVAIFFSQVMANIGGNTAGPGDAVVNVYINHDKKFAFVEMRSVEEA 300
Query: 188 EKAVDKLNGYDFGGRLLTVNKAAPRGSRPERAPRSFDAQP-------------------- 227
A+ L+G F G + V + P P A +QP
Sbjct: 301 SNAM-ALDGIIFEGAPVKVRR--PTDYNPSLAATLGPSQPNPNLNLGAVGLTPGSAGGLE 357
Query: 228 -AFRVYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDA 286
R++VG LP+ F +Q+ ++ G + +V DRETG S+G+ F +D A + A
Sbjct: 358 GPDRIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYADLAVTDIA 417
Query: 287 IAALDGQSLGGRTIRVNVA 305
AAL+G +G +T+ V A
Sbjct: 418 CAALNGIKMGDKTLTVRRA 436
>Medtr2g026180.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465398-9461370 | 20130731
Length = 481
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 84/181 (46%), Gaps = 11/181 (6%)
Query: 133 AKLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVD 192
KLF+G + +D + +L + F G V A ++ +R T ++RGFGFV AE+ V
Sbjct: 4 GKLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVM 63
Query: 193 KLNGYDFGGRLLTVNKAAPRGSRP--ERAPRSFDAQPA------FRVYVGNLPWDFDNSQ 244
+ + D GR + KA PR + R+ S PA +++VG L S
Sbjct: 64 EKHVID--GRTVEAKKAVPRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTVTESD 121
Query: 245 LEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQSLGGRTIRVNV 304
+ F + G + V+YD T R RGFGF+T D E + + L G+ + V
Sbjct: 122 FKNYFDQFGTITDVVVMYDHNTQRPRGFGFITY-DSEEAVEKVLHKTFHELNGKMVEVKR 180
Query: 305 A 305
A
Sbjct: 181 A 181
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 230 RVYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAA 289
++++G + WD + +L Q F G VV A ++ DR TGR+RGFGFV +D + +
Sbjct: 5 KLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV-- 62
Query: 290 LDGQSLGGRTIRVNVAEDR 308
++ + GRT+ A R
Sbjct: 63 MEKHVIDGRTVEAKKAVPR 81
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 134 KLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDK 193
K+FVG L F+Q GT+ V+Y+ T + RGFGF+T + E EK + K
Sbjct: 107 KIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHK 166
Query: 194 LNGYDFGGRLLTVNKAAPRGSRP 216
++ G+++ V +A P+ P
Sbjct: 167 TF-HELNGKMVEVKRAVPKDLSP 188
>Medtr2g026180.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465402-9461271 | 20130731
Length = 481
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 84/181 (46%), Gaps = 11/181 (6%)
Query: 133 AKLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVD 192
KLF+G + +D + +L + F G V A ++ +R T ++RGFGFV AE+ V
Sbjct: 4 GKLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVM 63
Query: 193 KLNGYDFGGRLLTVNKAAPRGSRP--ERAPRSFDAQPA------FRVYVGNLPWDFDNSQ 244
+ + D GR + KA PR + R+ S PA +++VG L S
Sbjct: 64 EKHVID--GRTVEAKKAVPRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTVTESD 121
Query: 245 LEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQSLGGRTIRVNV 304
+ F + G + V+YD T R RGFGF+T D E + + L G+ + V
Sbjct: 122 FKNYFDQFGTITDVVVMYDHNTQRPRGFGFITY-DSEEAVEKVLHKTFHELNGKMVEVKR 180
Query: 305 A 305
A
Sbjct: 181 A 181
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 230 RVYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAA 289
++++G + WD + +L Q F G VV A ++ DR TGR+RGFGFV +D + +
Sbjct: 5 KLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV-- 62
Query: 290 LDGQSLGGRTIRVNVAEDR 308
++ + GRT+ A R
Sbjct: 63 MEKHVIDGRTVEAKKAVPR 81
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 134 KLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDK 193
K+FVG L F+Q GT+ V+Y+ T + RGFGF+T + E EK + K
Sbjct: 107 KIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHK 166
Query: 194 LNGYDFGGRLLTVNKAAPRGSRP 216
++ G+++ V +A P+ P
Sbjct: 167 TF-HELNGKMVEVKRAVPKDLSP 188
>Medtr2g026180.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465359-9461307 | 20130731
Length = 481
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 84/181 (46%), Gaps = 11/181 (6%)
Query: 133 AKLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVD 192
KLF+G + +D + +L + F G V A ++ +R T ++RGFGFV AE+ V
Sbjct: 4 GKLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVM 63
Query: 193 KLNGYDFGGRLLTVNKAAPRGSRP--ERAPRSFDAQPA------FRVYVGNLPWDFDNSQ 244
+ + D GR + KA PR + R+ S PA +++VG L S
Sbjct: 64 EKHVID--GRTVEAKKAVPRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTVTESD 121
Query: 245 LEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQSLGGRTIRVNV 304
+ F + G + V+YD T R RGFGF+T D E + + L G+ + V
Sbjct: 122 FKNYFDQFGTITDVVVMYDHNTQRPRGFGFITY-DSEEAVEKVLHKTFHELNGKMVEVKR 180
Query: 305 A 305
A
Sbjct: 181 A 181
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 230 RVYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAA 289
++++G + WD + +L Q F G VV A ++ DR TGR+RGFGFV +D + +
Sbjct: 5 KLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV-- 62
Query: 290 LDGQSLGGRTIRVNVAEDR 308
++ + GRT+ A R
Sbjct: 63 MEKHVIDGRTVEAKKAVPR 81
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 134 KLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDK 193
K+FVG L F+Q GT+ V+Y+ T + RGFGF+T + E EK + K
Sbjct: 107 KIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHK 166
Query: 194 LNGYDFGGRLLTVNKAAPRGSRP 216
++ G+++ V +A P+ P
Sbjct: 167 TF-HELNGKMVEVKRAVPKDLSP 188
>Medtr1g020080.1 | polyadenylate-binding protein RBP47C | HC |
chr1:6171590-6176327 | 20130731
Length = 425
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 88/181 (48%), Gaps = 10/181 (5%)
Query: 135 LFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDKL 194
L++G+L D L F G + +VI N+ + S G+GF + AEK +
Sbjct: 99 LWIGDLHSWMDESYLHRCFASTGEITSVKVIRNKHSGISEGYGFAEFFSHATAEKVLQ-- 156
Query: 195 NGYDFGGRLLTVNKAAPR--GSRPERAPRSFDAQPAFRVYVGNLPWDFDNSQLEQVFSE- 251
++ G L+ A R + + D ++VG+L D +S L + FS
Sbjct: 157 ---NYAGILMPNADQAFRLNWATFSTGDKGSDNVTDLSIFVGDLAADVTDSVLHETFSSS 213
Query: 252 HGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQSLGGRTIRVNVAEDRPRR 311
+ V +A+VVYD TGRS+G+GFV DE+E + A+ ++G R +R+ A PR+
Sbjct: 214 YPSVKAAKVVYDANTGRSKGYGFVRFGDESERSQAMTQMNGVYCSSRPMRIGAAT--PRK 271
Query: 312 S 312
S
Sbjct: 272 S 272
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 91/188 (48%), Gaps = 15/188 (7%)
Query: 135 LFVGNLPYDADGHKLAELFNQ-VGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDK 193
+FVG+L D L E F+ +V A+V+Y+ T +S+G+GFV + +A+ +
Sbjct: 192 IFVGDLAADVTDSVLHETFSSSYPSVKAAKVVYDANTGRSKGYGFVRFGDESERSQAMTQ 251
Query: 194 LNGYDFGGRLLTVNKAAPR---GSRPERAPRSFDAQPA-----FRVYVGNLPWDFDNSQL 245
+NG R + + A PR G +P +Q ++VG L + + L
Sbjct: 252 MNGVYCSSRPMRIGAATPRKSSGHQPGGQSNGTSSQSEADSTNTTIFVGGLDSNVTDEDL 311
Query: 246 EQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQSLGGRTIRVNVA 305
+Q FS++G++ S ++ +G GFV ++ +A+ L+G +G +T+R++
Sbjct: 312 KQTFSQYGEIASVKIPV------GKGCGFVQFANRNNAEEALQKLNGTMIGKQTVRLSWG 365
Query: 306 EDRPRRSF 313
+ + F
Sbjct: 366 RNPAYKQF 373
>Medtr4g085540.1 | polyadenylate-binding protein | HC |
chr4:33416965-33423437 | 20130731
Length = 654
Score = 75.1 bits (183), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 82/174 (47%), Gaps = 21/174 (12%)
Query: 135 LFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDKL 194
L+VG+L + +L +LFNQ+G V V + T +S G+G+V +DA +A+D L
Sbjct: 36 LYVGDLDMNVTDSQLYDLFNQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDVL 95
Query: 195 NGYDFGGRLLTVNKAAPRGSRPERAPRSFDAQPAFR------VYVGNLPWDFDNSQLEQV 248
N P +RP R S P+ R +++ NL D+ L
Sbjct: 96 N-------------FTPLNNRPIRIMYSH-RDPSIRKSGQGNIFIKNLDKAIDHKALHDT 141
Query: 249 FSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQSLGGRTIRV 302
FS G ++S +V D +G+S+G+GFV E AI L+G L + + V
Sbjct: 142 FSSFGNILSCKVAVD-GSGQSKGYGFVQFDTEEAAQKAIEKLNGMLLNDKQVYV 194
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 92/186 (49%), Gaps = 12/186 (6%)
Query: 135 LFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETD-QSRGFGFVTMKTVEDAEKAVDK 193
+FV NL +L + F + GT+ A V+ R+ D +S+ FGFV ++ +DA +AV+
Sbjct: 215 VFVKNLSESTTDDELKKTFGEFGTITSAVVM--RDGDGKSKCFGFVNFESTDDAARAVEA 272
Query: 194 LNGYDFGGRLLTVNKAAPRGSRPERAPRSF--------DAQPAFRVYVGNLPWDFDNSQL 245
LNG + V KA + R F D +YV NL + +L
Sbjct: 273 LNGKKIDDKEWYVGKAQKKSEREHELKIKFEQSMKEAADKYQGANLYVKNLDDSIADEKL 332
Query: 246 EQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQSLGGRTIRVNVA 305
+++FS +G + S +V+ D G SRG GFV S E + A+ ++G+ + + + V +A
Sbjct: 333 KELFSSYGTITSCKVMRD-PNGVSRGSGFVAFSTPEEASRALLEMNGKMVASKPLYVTLA 391
Query: 306 EDRPRR 311
+ + R
Sbjct: 392 QRKEDR 397
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 45/79 (56%)
Query: 231 VYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAAL 290
+YVG+L + +SQL +F++ G+VVS RV D T RS G+G+V S+ + A+ L
Sbjct: 36 LYVGDLDMNVTDSQLYDLFNQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDVL 95
Query: 291 DGQSLGGRTIRVNVAEDRP 309
+ L R IR+ + P
Sbjct: 96 NFTPLNNRPIRIMYSHRDP 114
>Medtr6g004810.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr6:438661-434987 | 20130731
Length = 383
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 86/174 (49%), Gaps = 8/174 (4%)
Query: 133 AKLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVD 192
K+F+G L + + + F + G + + ++ +R+T Q RGFGF+T +K ++
Sbjct: 45 GKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDKVIE 104
Query: 193 KLNGYDFGGRLLTVNKAAPRGSRPERAPRSFDAQPAFRVYVGNLPWDFDNSQLEQVFSEH 252
+ + + + + + PRG+ + R+ +++VG +P + + F+ +
Sbjct: 105 --DSHIINSKQVEIKRTIPRGAVGSKDFRTK------KIFVGGIPSNVTEDEFRDFFTRY 156
Query: 253 GKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQSLGGRTIRVNVAE 306
G+V +++ D T RSRGFGFVT E ++D ++ + G + + AE
Sbjct: 157 GEVKDHQIMRDHSTNRSRGFGFVTFDTEEAVDDLLSMGNKIEFAGTQVEIKKAE 210
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 8/83 (9%)
Query: 134 KLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDK 193
K+FVG +P + + + F + G V +++ + T++SRGFGFVT D E+AVD
Sbjct: 134 KIFVGGIPSNVTEDEFRDFFTRYGEVKDHQIMRDHSTNRSRGFGFVTF----DTEEAVDD 189
Query: 194 L----NGYDFGGRLLTVNKAAPR 212
L N +F G + + KA P+
Sbjct: 190 LLSMGNKIEFAGTQVEIKKAEPK 212
>Medtr3g082650.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:37290152-37292326 | 20130731
Length = 352
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 89/179 (49%), Gaps = 10/179 (5%)
Query: 133 AKLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVD 192
K+F+G L D + + F + G + + ++ +R T + RGFGF+T ++ +
Sbjct: 18 GKIFIGGLAKDTTLEEFVKYFERYGEITDSVIMKDRHTGRPRGFGFITYADASVVDQVIQ 77
Query: 193 KLNGYDFGGRLLTVNKAAPRGSRPERAPRSFDAQPAFRVYVGNLPWDFDNSQLEQVFSEH 252
+ + + + + + P+G A ++ D + +++VG +P +L+ FS+H
Sbjct: 78 E--NHIINDKQVEIKRTIPKG-----ASQTNDFKTK-KIFVGGIPATVSEDELKIFFSKH 129
Query: 253 GKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQSLGGRTIRVNVAEDRPRR 311
G VV ++ D T RSRGFGFV + +++ +A DG + +V + + P++
Sbjct: 130 GNVVEHEIIRDHTTKRSRGFGFVVFDSDKAVDNLLA--DGNMIDMDDTQVEIKKAEPKK 186
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%)
Query: 214 SRPERAPRSFDAQPAFRVYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFG 273
SR P S D ++++G L D + + F +G++ + ++ DR TGR RGFG
Sbjct: 3 SRKSDNPHSGDGASPGKIFIGGLAKDTTLEEFVKYFERYGEITDSVIMKDRHTGRPRGFG 62
Query: 274 FVTMSDEAELNDAI 287
F+T +D + ++ I
Sbjct: 63 FITYADASVVDQVI 76
>Medtr3g005670.6 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313978-307107 | 20130731
Length = 624
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 90/199 (45%), Gaps = 30/199 (15%)
Query: 134 KLFVGNLPYDADGHKLAELFNQV------GTVDLAEVIYNRETDQSRGFGFVTMKTVEDA 187
+++VG L A+ +A F+QV T + + N + + F FV M++VE+A
Sbjct: 289 RVYVGGLSPTANEQSVATFFSQVMATIGGNTAGPGDAVVNVYINHDKKFAFVEMRSVEEA 348
Query: 188 EKAVDKLNGYDFGGRLLTVNKAAPRGSRPERAPRSFDAQP-------------------- 227
A+ L+G F G + V + P P A +QP
Sbjct: 349 SNAM-ALDGIIFEGAPVKVRR--PTDYNPSLAAALGPSQPNPNLNLGLVGLSPGSAGGLD 405
Query: 228 -AFRVYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDA 286
R++VG +P+ F +Q+ ++ G + +V DRETG S+G+ F D A + A
Sbjct: 406 GPDRIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIA 465
Query: 287 IAALDGQSLGGRTIRVNVA 305
AAL+G +G +T+ V A
Sbjct: 466 CAALNGIKMGDKTLTVRRA 484
>Medtr3g005670.7 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313978-307107 | 20130731
Length = 626
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 90/199 (45%), Gaps = 30/199 (15%)
Query: 134 KLFVGNLPYDADGHKLAELFNQV------GTVDLAEVIYNRETDQSRGFGFVTMKTVEDA 187
+++VG L A+ +A F+QV T + + N + + F FV M++VE+A
Sbjct: 291 RVYVGGLSPTANEQSVATFFSQVMATIGGNTAGPGDAVVNVYINHDKKFAFVEMRSVEEA 350
Query: 188 EKAVDKLNGYDFGGRLLTVNKAAPRGSRPERAPRSFDAQP-------------------- 227
A+ L+G F G + V + P P A +QP
Sbjct: 351 SNAM-ALDGIIFEGAPVKVRR--PTDYNPSLAAALGPSQPNPNLNLGLVGLSPGSAGGLD 407
Query: 228 -AFRVYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDA 286
R++VG +P+ F +Q+ ++ G + +V DRETG S+G+ F D A + A
Sbjct: 408 GPDRIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIA 467
Query: 287 IAALDGQSLGGRTIRVNVA 305
AAL+G +G +T+ V A
Sbjct: 468 CAALNGIKMGDKTLTVRRA 486
>Medtr4g052940.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 354
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 76/145 (52%), Gaps = 18/145 (12%)
Query: 133 AKLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVD 192
++++VG +P DA L E ++G V ++ ++ +++GF FVT + VE A KA++
Sbjct: 110 SEVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIE 169
Query: 193 KLNGYDFGGRLLTVNKAAPRGSRPERAPRSFDAQPAFRVYVGNLPWDFDNSQLEQVFSEH 252
+LN +F GR + + +Q R+++GN+P + L++V ++
Sbjct: 170 ELNNTEFKGRKI----------------KCSTSQAKNRLFIGNIPRSWGEKDLKKVVTDI 213
Query: 253 GKVVSA-RVVYD-RETGRSRGFGFV 275
G V+A +V D + +RGF F+
Sbjct: 214 GPGVTAVELVKDMKNISNNRGFAFI 238
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 71/161 (44%), Gaps = 13/161 (8%)
Query: 134 KLFVGNLPYDADGHKLAELFNQVGT-VDLAEVIYN-RETDQSRGFGFVTMKTVEDAEKAV 191
+LF+GN+P L ++ +G V E++ + + +RGF F+ + AE
Sbjct: 191 RLFIGNIPRSWGEKDLKKVVTDIGPGVTAVELVKDMKNISNNRGFAFIDYHNNQCAEYGR 250
Query: 192 DKLNG--YDFGGRLLTVNKAAPRGSRPERAPRSFDAQPAFRVYVGNLPWDFDNSQLEQVF 249
K+ + G TV+ A P+ S S + VYV NLP + QL+++F
Sbjct: 251 QKMMSPSFKLGDNSPTVSWADPKNSD------SSASSQVKAVYVKNLPKNVTQEQLKKLF 304
Query: 250 SEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAAL 290
HGK+ + + GFV AE ++A+ AL
Sbjct: 305 EHHGKITKVVLPPPKSGQEKNRIGFVHF---AERSNAMKAL 342
>Medtr1g097280.1 | cleavage stimulating factor, putative | HC |
chr1:43879642-43873268 | 20130731
Length = 572
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 54/91 (59%), Gaps = 3/91 (3%)
Query: 220 PRSFDAQPAFR---VYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVT 276
P F A P + V+VGN+P+D QL+++ E G V+S R+V DRETG+ +G+GF
Sbjct: 17 PLDFMAAPQSQHRTVFVGNIPYDATEEQLKEICREVGPVISFRLVTDRETGKPKGYGFCE 76
Query: 277 MSDEAELNDAIAALDGQSLGGRTIRVNVAED 307
+DE A L G + GR +RV+ AE+
Sbjct: 77 YTDEETALSARRNLQGYEINGRQLRVDFAEN 107
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 43/75 (57%)
Query: 135 LFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDKL 194
+FVGN+PYDA +L E+ +VG V ++ +RET + +G+GF E A A L
Sbjct: 31 VFVGNIPYDATEEQLKEICREVGPVISFRLVTDRETGKPKGYGFCEYTDEETALSARRNL 90
Query: 195 NGYDFGGRLLTVNKA 209
GY+ GR L V+ A
Sbjct: 91 QGYEINGRQLRVDFA 105
>Medtr3g005670.4 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313978-307107 | 20130731
Length = 583
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 90/199 (45%), Gaps = 30/199 (15%)
Query: 134 KLFVGNLPYDADGHKLAELFNQV------GTVDLAEVIYNRETDQSRGFGFVTMKTVEDA 187
+++VG L A+ +A F+QV T + + N + + F FV M++VE+A
Sbjct: 289 RVYVGGLSPTANEQSVATFFSQVMATIGGNTAGPGDAVVNVYINHDKKFAFVEMRSVEEA 348
Query: 188 EKAVDKLNGYDFGGRLLTVNKAAPRGSRPERAPRSFDAQP-------------------- 227
A+ L+G F G + V + P P A +QP
Sbjct: 349 SNAM-ALDGIIFEGAPVKVRR--PTDYNPSLAAALGPSQPNPNLNLGLVGLSPGSAGGLD 405
Query: 228 -AFRVYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDA 286
R++VG +P+ F +Q+ ++ G + +V DRETG S+G+ F D A + A
Sbjct: 406 GPDRIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIA 465
Query: 287 IAALDGQSLGGRTIRVNVA 305
AAL+G +G +T+ V A
Sbjct: 466 CAALNGIKMGDKTLTVRRA 484
>Medtr4g052940.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 504
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 76/145 (52%), Gaps = 18/145 (12%)
Query: 133 AKLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVD 192
++++VG +P DA L E ++G V ++ ++ +++GF FVT + VE A KA++
Sbjct: 110 SEVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIE 169
Query: 193 KLNGYDFGGRLLTVNKAAPRGSRPERAPRSFDAQPAFRVYVGNLPWDFDNSQLEQVFSEH 252
+LN +F GR + + +Q R+++GN+P + L++V ++
Sbjct: 170 ELNNTEFKGRKI----------------KCSTSQAKNRLFIGNIPRSWGEKDLKKVVTDI 213
Query: 253 GKVVSA-RVVYD-RETGRSRGFGFV 275
G V+A +V D + +RGF F+
Sbjct: 214 GPGVTAVELVKDMKNISNNRGFAFI 238
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 77/177 (43%), Gaps = 10/177 (5%)
Query: 134 KLFVGNLPYDADGHKLAELFNQVGT-VDLAEVIYN-RETDQSRGFGFVTMKTVEDAEKAV 191
+LF+GN+P L ++ +G V E++ + + +RGF F+ + AE
Sbjct: 191 RLFIGNIPRSWGEKDLKKVVTDIGPGVTAVELVKDMKNISNNRGFAFIDYHNNQCAEYGR 250
Query: 192 DKL--NGYDFGGRLLTVNKAAPRGSRPERAPRSFDAQPAFRVYVGNLPWDFDNSQLEQVF 249
K+ + G TV+ A P+ S S + VYV NLP + QL+++F
Sbjct: 251 QKMMSPSFKLGDNSPTVSWADPKNSD------SSASSQVKAVYVKNLPKNVTQEQLKKLF 304
Query: 250 SEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQSLGGRTIRVNVAE 306
HGK+ + + GFV ++ + A+ + L G+ + ++A+
Sbjct: 305 EHHGKITKVVLPPPKSGQEKNRIGFVHFAERSNAMKALKNTERYELDGQNLECSLAK 361
>Medtr4g052940.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 504
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 76/145 (52%), Gaps = 18/145 (12%)
Query: 133 AKLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVD 192
++++VG +P DA L E ++G V ++ ++ +++GF FVT + VE A KA++
Sbjct: 110 SEVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIE 169
Query: 193 KLNGYDFGGRLLTVNKAAPRGSRPERAPRSFDAQPAFRVYVGNLPWDFDNSQLEQVFSEH 252
+LN +F GR + + +Q R+++GN+P + L++V ++
Sbjct: 170 ELNNTEFKGRKI----------------KCSTSQAKNRLFIGNIPRSWGEKDLKKVVTDI 213
Query: 253 GKVVSA-RVVYD-RETGRSRGFGFV 275
G V+A +V D + +RGF F+
Sbjct: 214 GPGVTAVELVKDMKNISNNRGFAFI 238
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 77/177 (43%), Gaps = 10/177 (5%)
Query: 134 KLFVGNLPYDADGHKLAELFNQVGT-VDLAEVIYN-RETDQSRGFGFVTMKTVEDAEKAV 191
+LF+GN+P L ++ +G V E++ + + +RGF F+ + AE
Sbjct: 191 RLFIGNIPRSWGEKDLKKVVTDIGPGVTAVELVKDMKNISNNRGFAFIDYHNNQCAEYGR 250
Query: 192 DKL--NGYDFGGRLLTVNKAAPRGSRPERAPRSFDAQPAFRVYVGNLPWDFDNSQLEQVF 249
K+ + G TV+ A P+ S S + VYV NLP + QL+++F
Sbjct: 251 QKMMSPSFKLGDNSPTVSWADPKNSD------SSASSQVKAVYVKNLPKNVTQEQLKKLF 304
Query: 250 SEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQSLGGRTIRVNVAE 306
HGK+ + + GFV ++ + A+ + L G+ + ++A+
Sbjct: 305 EHHGKITKVVLPPPKSGQEKNRIGFVHFAERSNAMKALKNTERYELDGQNLECSLAK 361
>Medtr4g052940.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 504
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 76/145 (52%), Gaps = 18/145 (12%)
Query: 133 AKLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVD 192
++++VG +P DA L E ++G V ++ ++ +++GF FVT + VE A KA++
Sbjct: 110 SEVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIE 169
Query: 193 KLNGYDFGGRLLTVNKAAPRGSRPERAPRSFDAQPAFRVYVGNLPWDFDNSQLEQVFSEH 252
+LN +F GR + + +Q R+++GN+P + L++V ++
Sbjct: 170 ELNNTEFKGRKI----------------KCSTSQAKNRLFIGNIPRSWGEKDLKKVVTDI 213
Query: 253 GKVVSA-RVVYD-RETGRSRGFGFV 275
G V+A +V D + +RGF F+
Sbjct: 214 GPGVTAVELVKDMKNISNNRGFAFI 238
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 77/177 (43%), Gaps = 10/177 (5%)
Query: 134 KLFVGNLPYDADGHKLAELFNQVGT-VDLAEVIYN-RETDQSRGFGFVTMKTVEDAEKAV 191
+LF+GN+P L ++ +G V E++ + + +RGF F+ + AE
Sbjct: 191 RLFIGNIPRSWGEKDLKKVVTDIGPGVTAVELVKDMKNISNNRGFAFIDYHNNQCAEYGR 250
Query: 192 DKL--NGYDFGGRLLTVNKAAPRGSRPERAPRSFDAQPAFRVYVGNLPWDFDNSQLEQVF 249
K+ + G TV+ A P+ S S + VYV NLP + QL+++F
Sbjct: 251 QKMMSPSFKLGDNSPTVSWADPKNSD------SSASSQVKAVYVKNLPKNVTQEQLKKLF 304
Query: 250 SEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQSLGGRTIRVNVAE 306
HGK+ + + GFV ++ + A+ + L G+ + ++A+
Sbjct: 305 EHHGKITKVVLPPPKSGQEKNRIGFVHFAERSNAMKALKNTERYELDGQNLECSLAK 361
>Medtr3g005670.3 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313745-308216 | 20130731
Length = 564
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 90/199 (45%), Gaps = 30/199 (15%)
Query: 134 KLFVGNLPYDADGHKLAELFNQV------GTVDLAEVIYNRETDQSRGFGFVTMKTVEDA 187
+++VG L A+ +A F+QV T + + N + + F FV M++VE+A
Sbjct: 291 RVYVGGLSPTANEQSVATFFSQVMATIGGNTAGPGDAVVNVYINHDKKFAFVEMRSVEEA 350
Query: 188 EKAVDKLNGYDFGGRLLTVNKAAPRGSRPERAPRSFDAQP-------------------- 227
A+ L+G F G + V + P P A +QP
Sbjct: 351 SNAM-ALDGIIFEGAPVKVRR--PTDYNPSLAAALGPSQPNPNLNLGLVGLSPGSAGGLD 407
Query: 228 -AFRVYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDA 286
R++VG +P+ F +Q+ ++ G + +V DRETG S+G+ F D A + A
Sbjct: 408 GPDRIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIA 467
Query: 287 IAALDGQSLGGRTIRVNVA 305
AAL+G +G +T+ V A
Sbjct: 468 CAALNGIKMGDKTLTVRRA 486
>Medtr3g005670.5 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313978-307107 | 20130731
Length = 585
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 90/199 (45%), Gaps = 30/199 (15%)
Query: 134 KLFVGNLPYDADGHKLAELFNQV------GTVDLAEVIYNRETDQSRGFGFVTMKTVEDA 187
+++VG L A+ +A F+QV T + + N + + F FV M++VE+A
Sbjct: 291 RVYVGGLSPTANEQSVATFFSQVMATIGGNTAGPGDAVVNVYINHDKKFAFVEMRSVEEA 350
Query: 188 EKAVDKLNGYDFGGRLLTVNKAAPRGSRPERAPRSFDAQP-------------------- 227
A+ L+G F G + V + P P A +QP
Sbjct: 351 SNAM-ALDGIIFEGAPVKVRR--PTDYNPSLAAALGPSQPNPNLNLGLVGLSPGSAGGLD 407
Query: 228 -AFRVYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDA 286
R++VG +P+ F +Q+ ++ G + +V DRETG S+G+ F D A + A
Sbjct: 408 GPDRIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIA 467
Query: 287 IAALDGQSLGGRTIRVNVA 305
AAL+G +G +T+ V A
Sbjct: 468 CAALNGIKMGDKTLTVRRA 486
>Medtr4g036415.1 | splicing factor-like protein | HC |
chr4:13104578-13109685 | 20130731
Length = 767
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 50/75 (66%)
Query: 231 VYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAAL 290
+Y+G LP ++ L Q+F + G++V A+V+ DR TG S+G+GFV +D N+AI A+
Sbjct: 453 LYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRITGLSKGYGFVKYADITMANNAIVAM 512
Query: 291 DGQSLGGRTIRVNVA 305
+G L GRTI V VA
Sbjct: 513 NGYRLEGRTIAVRVA 527
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%)
Query: 135 LFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDKL 194
L++G LP + L +LF Q G + +A+VI +R T S+G+GFV + A A+ +
Sbjct: 453 LYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRITGLSKGYGFVKYADITMANNAIVAM 512
Query: 195 NGYDFGGRLLTVNKAA 210
NGY GR + V A
Sbjct: 513 NGYRLEGRTIAVRVAG 528
>Medtr5g017280.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6297976 | 20130731
Length = 397
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 86/173 (49%), Gaps = 12/173 (6%)
Query: 134 KLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDK 193
KL V +P+D D L E ++ G ++ V+ R T +SRGFG+VT +V+DA++
Sbjct: 5 KLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEV--- 61
Query: 194 LNG-YDFGGRLLTVNKAAPRGSRPERAPRSFDAQPAFRVYVGNLPWDFDNSQLEQVFSEH 252
L+G + G R+L V A P+ RAP A+ R++V +P F ++
Sbjct: 62 LSGEHVLGDRMLEVKVATPK--EEMRAP----AKKVTRIFVARIPPSVTEETFRSHFEKY 115
Query: 253 GKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQSLGGRTIRVNVA 305
G + + D+ + RG GF+T + + + ++ + LGG + V+ A
Sbjct: 116 GDITDLYMPKDQGSKMHRGIGFITFGNAESVENLMS--ETHELGGSAVVVDRA 166
>Medtr5g017280.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6297976 | 20130731
Length = 397
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 86/173 (49%), Gaps = 12/173 (6%)
Query: 134 KLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDK 193
KL V +P+D D L E ++ G ++ V+ R T +SRGFG+VT +V+DA++
Sbjct: 5 KLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEV--- 61
Query: 194 LNG-YDFGGRLLTVNKAAPRGSRPERAPRSFDAQPAFRVYVGNLPWDFDNSQLEQVFSEH 252
L+G + G R+L V A P+ RAP A+ R++V +P F ++
Sbjct: 62 LSGEHVLGDRMLEVKVATPK--EEMRAP----AKKVTRIFVARIPPSVTEETFRSHFEKY 115
Query: 253 GKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQSLGGRTIRVNVA 305
G + + D+ + RG GF+T + + + ++ + LGG + V+ A
Sbjct: 116 GDITDLYMPKDQGSKMHRGIGFITFGNAESVENLMS--ETHELGGSAVVVDRA 166
>Medtr5g017280.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6298060 | 20130731
Length = 397
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 86/173 (49%), Gaps = 12/173 (6%)
Query: 134 KLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDK 193
KL V +P+D D L E ++ G ++ V+ R T +SRGFG+VT +V+DA++
Sbjct: 5 KLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEV--- 61
Query: 194 LNG-YDFGGRLLTVNKAAPRGSRPERAPRSFDAQPAFRVYVGNLPWDFDNSQLEQVFSEH 252
L+G + G R+L V A P+ RAP A+ R++V +P F ++
Sbjct: 62 LSGEHVLGDRMLEVKVATPK--EEMRAP----AKKVTRIFVARIPPSVTEETFRSHFEKY 115
Query: 253 GKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQSLGGRTIRVNVA 305
G + + D+ + RG GF+T + + + ++ + LGG + V+ A
Sbjct: 116 GDITDLYMPKDQGSKMHRGIGFITFGNAESVENLMS--ETHELGGSAVVVDRA 166
>Medtr5g017280.4 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6298060 | 20130731
Length = 373
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 86/173 (49%), Gaps = 12/173 (6%)
Query: 134 KLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDK 193
KL V +P+D D L E ++ G ++ V+ R T +SRGFG+VT +V+DA++
Sbjct: 5 KLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEV--- 61
Query: 194 LNG-YDFGGRLLTVNKAAPRGSRPERAPRSFDAQPAFRVYVGNLPWDFDNSQLEQVFSEH 252
L+G + G R+L V A P+ RAP A+ R++V +P F ++
Sbjct: 62 LSGEHVLGDRMLEVKVATPK--EEMRAP----AKKVTRIFVARIPPSVTEETFRSHFEKY 115
Query: 253 GKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQSLGGRTIRVNVA 305
G + + D+ + RG GF+T + + + ++ + LGG + V+ A
Sbjct: 116 GDITDLYMPKDQGSKMHRGIGFITFGNAESVENLMS--ETHELGGSAVVVDRA 166
>Medtr3g005670.2 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313978-307107 | 20130731
Length = 624
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 90/199 (45%), Gaps = 30/199 (15%)
Query: 134 KLFVGNLPYDADGHKLAELFNQV------GTVDLAEVIYNRETDQSRGFGFVTMKTVEDA 187
+++VG L A+ +A F+QV T + + N + + F FV M++VE+A
Sbjct: 289 RVYVGGLSPTANEQSVATFFSQVMATIGGNTAGPGDAVVNVYINHDKKFAFVEMRSVEEA 348
Query: 188 EKAVDKLNGYDFGGRLLTVNKAAPRGSRPERAPRSFDAQP-------------------- 227
A+ L+G F G + V + P P A +QP
Sbjct: 349 SNAM-ALDGIIFEGAPVKVRR--PTDYNPSLAAALGPSQPNPNLNLGLVGLSPGSAGGLD 405
Query: 228 -AFRVYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDA 286
R++VG +P+ F +Q+ ++ G + +V DRETG S+G+ F D A + A
Sbjct: 406 GPDRIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIA 465
Query: 287 IAALDGQSLGGRTIRVNVA 305
AAL+G +G +T+ V A
Sbjct: 466 CAALNGIKMGDKTLTVRRA 484
>Medtr3g005670.1 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313978-307107 | 20130731
Length = 626
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 90/199 (45%), Gaps = 30/199 (15%)
Query: 134 KLFVGNLPYDADGHKLAELFNQV------GTVDLAEVIYNRETDQSRGFGFVTMKTVEDA 187
+++VG L A+ +A F+QV T + + N + + F FV M++VE+A
Sbjct: 291 RVYVGGLSPTANEQSVATFFSQVMATIGGNTAGPGDAVVNVYINHDKKFAFVEMRSVEEA 350
Query: 188 EKAVDKLNGYDFGGRLLTVNKAAPRGSRPERAPRSFDAQP-------------------- 227
A+ L+G F G + V + P P A +QP
Sbjct: 351 SNAM-ALDGIIFEGAPVKVRR--PTDYNPSLAAALGPSQPNPNLNLGLVGLSPGSAGGLD 407
Query: 228 -AFRVYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDA 286
R++VG +P+ F +Q+ ++ G + +V DRETG S+G+ F D A + A
Sbjct: 408 GPDRIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIA 467
Query: 287 IAALDGQSLGGRTIRVNVA 305
AAL+G +G +T+ V A
Sbjct: 468 CAALNGIKMGDKTLTVRRA 486
>Medtr3g103420.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:47715877-47717644 | 20130731
Length = 371
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 80/189 (42%), Gaps = 16/189 (8%)
Query: 133 AKLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVD 192
AKLFVG + + L F + G V + + ++R T RGFGFVT + A A+
Sbjct: 10 AKLFVGGISRETTEDTLKHHFTKYGDVLHSTISFDRTTRIPRGFGFVTFSDISSAHNALQ 69
Query: 193 KLNGYDFGGRLLTVNKAAPRG------SRPERAPRSFDAQPAF-------RVYVGNLPWD 239
+ GR + V KA PR R S+ +++VG LP +
Sbjct: 70 DTHA--ILGRKVEVRKAIPRSEQLQQNQLQNRGGNSYSGYECGNEHIRTKKIFVGGLPAN 127
Query: 240 FDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQSLGGRT 299
+ ++ F G++ V+ D T R RGFGF+T E + ++ L GR
Sbjct: 128 MSVEEFKRYFERFGRITDVVVMQDSLTHRPRGFGFITFDSEDSV-QSVMMRSFHDLNGRQ 186
Query: 300 IRVNVAEDR 308
+ V A R
Sbjct: 187 VEVKRAVPR 195
>Medtr7g010360.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
LC | chr7:2533493-2542856 | 20130731
Length = 752
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 73/145 (50%), Gaps = 18/145 (12%)
Query: 133 AKLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVD 192
++++VG +P DA L E +G V + ++ ++RGF FVT +++E A KA+
Sbjct: 350 SEVYVGGIPLDAKTEDLKEFCECIGEVVQVRIFKGKDASENRGFAFVTYRSIELASKAIK 409
Query: 193 KLNGYDFGGRLLTVNKAAPRGSRPERAPRSFDAQPAFRVYVGNLPWDFDNSQLEQVFSEH 252
+LN +F + +K +Q R+++GN+P + L++V S+
Sbjct: 410 ELNNTEFKAGKIKCSK----------------SQAKSRLFIGNIPRSWGEKDLKKVVSDI 453
Query: 253 GKVVSA-RVVYD-RETGRSRGFGFV 275
G V+A ++ D + +RG+ F+
Sbjct: 454 GPGVTAVELIKDMKNISNNRGYAFI 478
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 82/180 (45%), Gaps = 10/180 (5%)
Query: 133 AKLFVGNLPYDADGHKLAELFNQVGT-VDLAEVIYN-RETDQSRGFGFVTMKTVEDAEKA 190
++LF+GN+P L ++ + +G V E+I + + +RG+ F+ + AE +
Sbjct: 430 SRLFIGNIPRSWGEKDLKKVVSDIGPGVTAVELIKDMKNISNNRGYAFIDYHNNQCAEYS 489
Query: 191 VDKLNG--YDFGGRLLTVNKAAPRGSRPERAPRSFDAQPAFRVYVGNLPWDFDNSQLEQV 248
K+ + G TVN A P+ A S +Q VYV NLP + QL+++
Sbjct: 490 RQKMTSPSFKLGDNFPTVNWAEPKN-----ADSSASSQ-VKEVYVKNLPKNVTKEQLKKL 543
Query: 249 FSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQSLGGRTIRVNVAEDR 308
F HGK+ + + GFV ++ + A+ + L G+ + ++A+ +
Sbjct: 544 FEHHGKITKVVLPPPKPGQEKNRIGFVHFAERSNAMKALKNTEKYVLDGQILECSLAKQQ 603
>Medtr4g088010.1 | heterogeneous nuclear ribonucleoprotein | HC |
chr4:34502474-34498575 | 20130731
Length = 356
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 79/155 (50%), Gaps = 9/155 (5%)
Query: 134 KLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDK 193
KLFV L + L +F+ G +D A VI+++ T +S+G+GFV + V+ A A+ K
Sbjct: 77 KLFVRGLSGETTTETLRTVFSSYGDLDEAIVIFDKATGRSKGYGFVVYRHVDGAVLAL-K 135
Query: 194 LNGYDFGGRLLTVNKAAPRGSRPERAPRSFDAQPAFRVYVGNLPWDFDNSQLEQVFSEHG 253
GR+ AA + + + R +V+VGN+P++ L FS++G
Sbjct: 136 EPSKKIDGRMTVTQLAAAGSTGGDVSSR--------KVFVGNVPFEVSAESLLSEFSKYG 187
Query: 254 KVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIA 288
++ + +D+ +G++RGF F E +++A
Sbjct: 188 EIEEGPLGFDKASGKTRGFAFFVYKTEEGAKNSVA 222
>Medtr1g073690.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:32695268-32699181 | 20130731
Length = 469
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 79/185 (42%), Gaps = 15/185 (8%)
Query: 133 AKLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVD 192
KLF+G + +D + KL E F+ G V V+ + T + RGFGFV ++ ++
Sbjct: 6 GKLFIGGISWDTNEEKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPSVLDRVLE 65
Query: 193 KLNGYDFGGRLLTVNKAAPRGSRPERAPRSFDAQPAF------------RVYVGNLPWDF 240
+ D GR + +A R + + +++VG LP
Sbjct: 66 DKHVID--GRTVDAKRAFSREDQQISVSSRSGNSNSGMNSGNGGNMRTKKIFVGGLPPTL 123
Query: 241 DNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQSLGGRTI 300
+ Q F +G V V+YD+ TGR RGFGF+T D E D + L G+ +
Sbjct: 124 AEEKFRQYFEAYGHVTDVVVMYDQNTGRPRGFGFITF-DTEEAVDRVLHKTFHDLNGKQV 182
Query: 301 RVNVA 305
V A
Sbjct: 183 EVKRA 187
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 230 RVYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAA 289
++++G + WD + +L++ FS +G V++ V+ ++ TG+ RGFGFV SD + L+ +
Sbjct: 7 KLFIGGISWDTNEEKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPSVLDRVLE- 65
Query: 290 LDGQSLGGRTIRVNVAEDR 308
D + GRT+ A R
Sbjct: 66 -DKHVIDGRTVDAKRAFSR 83
>Medtr1g073690.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:32695268-32699181 | 20130731
Length = 469
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 79/185 (42%), Gaps = 15/185 (8%)
Query: 133 AKLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVD 192
KLF+G + +D + KL E F+ G V V+ + T + RGFGFV ++ ++
Sbjct: 6 GKLFIGGISWDTNEEKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPSVLDRVLE 65
Query: 193 KLNGYDFGGRLLTVNKAAPRGSRPERAPRSFDAQPAF------------RVYVGNLPWDF 240
+ D GR + +A R + + +++VG LP
Sbjct: 66 DKHVID--GRTVDAKRAFSREDQQISVSSRSGNSNSGMNSGNGGNMRTKKIFVGGLPPTL 123
Query: 241 DNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQSLGGRTI 300
+ Q F +G V V+YD+ TGR RGFGF+T D E D + L G+ +
Sbjct: 124 AEEKFRQYFEAYGHVTDVVVMYDQNTGRPRGFGFITF-DTEEAVDRVLHKTFHDLNGKQV 182
Query: 301 RVNVA 305
V A
Sbjct: 183 EVKRA 187
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 230 RVYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAA 289
++++G + WD + +L++ FS +G V++ V+ ++ TG+ RGFGFV SD + L+ +
Sbjct: 7 KLFIGGISWDTNEEKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPSVLDRVLE- 65
Query: 290 LDGQSLGGRTIRVNVAEDR 308
D + GRT+ A R
Sbjct: 66 -DKHVIDGRTVDAKRAFSR 83
>Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:42674424-42676547 | 20130731
Length = 140
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 55/92 (59%)
Query: 222 SFDAQPAFRVYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEA 281
+F AF+++VG L + L FS +G+VV A+V+ DR + +S+G+GFVT + +
Sbjct: 25 TFRRAIAFKLFVGGLSFHTTEKTLSDAFSNYGQVVEAKVITDRISEKSKGYGFVTFASQD 84
Query: 282 ELNDAIAALDGQSLGGRTIRVNVAEDRPRRSF 313
E AI ++ ++L GR + V+ A+ +RS
Sbjct: 85 EAEKAITEMNEKALNGRVVFVDYAKPDTKRSM 116
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 52/87 (59%)
Query: 134 KLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDK 193
KLFVG L + L++ F+ G V A+VI +R +++S+G+GFVT + ++AEKA+ +
Sbjct: 33 KLFVGGLSFHTTEKTLSDAFSNYGQVVEAKVITDRISEKSKGYGFVTFASQDEAEKAITE 92
Query: 194 LNGYDFGGRLLTVNKAAPRGSRPERAP 220
+N GR++ V+ A P R P
Sbjct: 93 MNEKALNGRVVFVDYAKPDTKRSMGMP 119
>Medtr7g118230.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49069532-49073325 | 20130731
Length = 345
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 78/170 (45%), Gaps = 29/170 (17%)
Query: 133 AKLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVD 192
+++V NLP D H L LF GTV EV N ET +S+G +VTM + A+ A+
Sbjct: 43 TQVYVCNLPRSCDTHHLLHLFTPHGTVLSTEVCRNAETGESKGSAYVTMGSYNAAKNALA 102
Query: 193 KLNGYDFGGRLLTVNKAAPRGSRPERAPRSFDAQPAFRVYVGNLPWDFDNSQLEQVFSEH 252
L+G D GGR + V + + P R+ + +VYVGNL W
Sbjct: 103 ALDGSDVGGREMLVKFSVETLNSPPMRRRTIYYEGPHKVYVGNL-W-------------- 147
Query: 253 GKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQSLGGRTIRV 302
GK +SR + FV+ + E DA +L+G GRT+ V
Sbjct: 148 GK-------------KSRVYAFVSYLSQRE-RDASMSLNGTEFCGRTLVV 183
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 46/86 (53%)
Query: 220 PRSFDAQPAFRVYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSD 279
PR +VYV NLP D L +F+ HG V+S V + ETG S+G +VTM
Sbjct: 34 PRKLKLGNPTQVYVCNLPRSCDTHHLLHLFTPHGTVLSTEVCRNAETGESKGSAYVTMGS 93
Query: 280 EAELNDAIAALDGQSLGGRTIRVNVA 305
+A+AALDG +GGR + V +
Sbjct: 94 YNAAKNALAALDGSDVGGREMLVKFS 119
>Medtr8g463890.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:22547309-22542060 | 20130731
Length = 445
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 90/166 (54%), Gaps = 8/166 (4%)
Query: 134 KLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDK 193
KLF+ L +D L LF+ G ++ A VI ++ T +S+G+GFVT V+ A A+ +
Sbjct: 74 KLFIRGLGWDTTTEGLRSLFSTYGELEEAIVIVDKATGKSKGYGFVTFLHVDGALLALRE 133
Query: 194 LNGYDFGGRLLTVNKAAPRGSRPERAPRSFDAQPAFRVYVGNLPWDFDNSQLEQVFSEHG 253
+ GR +TV + A G+ + AQ ++YV N+P D +L FS +G
Sbjct: 134 PS-KRIDGR-VTVTQLAAAGNSGSNTNAADVAQ--RKIYVSNVPPDLPGDKLLAHFSIYG 189
Query: 254 KVVSARVVYDRETGRSRGFG-FVTMSDE---AELNDAIAALDGQSL 295
++ + +D++TGRS+GF FV + E A +++ + ++G+ L
Sbjct: 190 EIEEGPLGFDKQTGRSKGFALFVYKTPEGANAAVSEPVKNVEGRQL 235
>Medtr4g122650.1 | flowering time control FCA-like protein | HC |
chr4:50587410-50576809 | 20130731
Length = 737
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 83/161 (51%), Gaps = 8/161 (4%)
Query: 133 AKLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVD 192
AKLFVG++P A + LF + G V +I +R+T Q +G F+ T E+A++A+
Sbjct: 88 AKLFVGSVPRTATEEDIRPLFEEHGNVVEVALIKDRKTGQHQGCCFIKYATSEEADQAIR 147
Query: 193 KL-NGYDFGGRLLTVNKAAPRGSRPERAPRSFDAQPAFRVYVGNLPWDFDNSQLEQVFSE 251
L N + G + + G R ER ++++VG+L ++E+VFS+
Sbjct: 148 ALHNRHTLPGGVGPIQVRYADGER-ERL-----GAVEYKLFVGSLNKQASVKEVEEVFSK 201
Query: 252 HGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDG 292
+G++ ++ D + +SRG GFV S AI AL+G
Sbjct: 202 YGRIEDVYLMRDDQK-QSRGCGFVKYSHRDMALAAINALNG 241
>Medtr1g101520.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:45856698-45851996 | 20130731
Length = 388
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 82/184 (44%), Gaps = 35/184 (19%)
Query: 135 LFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDKL 194
+F GN YD +L LF + G VD D GF F+ M+ DAE A+ L
Sbjct: 4 IFCGNFEYDCRESELERLFRRYGKVDR--------VDMKAGFAFIYMEDERDAEAAIRAL 55
Query: 195 NGYDFG--GRLLTVN-KAAPRG-----SRPERAPRSFDAQPAFRVYVGNLPWDFDNSQ-- 244
+ +FG GR L V RG RP+R+ S +A+P+ ++V N FD Q
Sbjct: 56 DRIEFGRKGRRLRVEWTKQERGVRRPAERPKRS--SANARPSKTLFVIN----FDTYQTR 109
Query: 245 ---LEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQSLGGRTIR 301
LE+ F +GK+VS R+ + F FV E + A+ A + L R I
Sbjct: 110 TRDLERHFEPYGKIVSVRI--------RKNFAFVQYESEDDACKALEATNNSKLMDRVIS 161
Query: 302 VNVA 305
V A
Sbjct: 162 VEFA 165
>Medtr3g084040.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:37961794-37963766 | 20130731
Length = 105
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 230 RVYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAA 289
++++G L ++ D+ L F+ +G VV ARV+ DRETGRSRGFGFV + E A+ +
Sbjct: 37 KLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSAL-S 95
Query: 290 LDGQ 293
+DGQ
Sbjct: 96 MDGQ 99
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 35/59 (59%)
Query: 133 AKLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAV 191
+KLF+G L Y+ D L + F G V A VI +RET +SRGFGFV + E A A+
Sbjct: 36 SKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSAL 94
>Medtr7g118120.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025533-49031900 | 20130731
Length = 479
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 75/151 (49%), Gaps = 18/151 (11%)
Query: 133 AKLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVD 192
+++F+G LP D + EL +G + ++I +RET +S+G+ FV KT E A+KA+D
Sbjct: 104 SEVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAID 163
Query: 193 KLNGYDFGGRLLTVNKAAPRGSRPERAPRSFDAQPAFRVYVGNLPWDFDNSQLEQVFSEH 252
++ +F G+ L R ++ R+++GN+P + + +
Sbjct: 164 DIHNKEFKGKTL----------------RCLLSETKHRLFIGNIPKTWTEDEFRKAVEGV 207
Query: 253 GK-VVSARVVYD-RETGRSRGFGFVTMSDEA 281
G V S ++ D + R+RGF FV + A
Sbjct: 208 GPGVESIDLIKDPQNQSRNRGFAFVLYYNNA 238
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 87/179 (48%), Gaps = 13/179 (7%)
Query: 134 KLFVGNLPYDADGHKLAELFNQVG----TVDLAEVIYNRETDQSRGFGFVTMKTVEDAEK 189
+LF+GN+P + + VG ++DL + N+ ++RGF FV A+
Sbjct: 185 RLFIGNIPKTWTEDEFRKAVEGVGPGVESIDLIKDPQNQ--SRNRGFAFVLYYNNACADF 242
Query: 190 AVDKLN--GYDFGGRLLTVNKAAPRGSRPERAPRSFDAQPAFRVYVGNLPWDFDNSQLEQ 247
+ K++ G+ G TV A P+ S P++ S A +YV N+P + QL++
Sbjct: 243 SRQKMSSVGFKLDGITPTVTWADPKTS-PDQ---SAAASQVKALYVKNIPENVTTEQLKE 298
Query: 248 VFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQSLGGRTIRVNVAE 306
+F HG+V + + +G+ R FGF+ ++ + A+ + + G+ + V +A+
Sbjct: 299 LFRRHGEVTKVVMPPGKASGK-RDFGFIHYAERSSALKAVKETEKYEIDGQALEVVIAK 356
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 43/80 (53%)
Query: 231 VYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAAL 290
V++G LP D + + ++ G +V +++ DRETG S+G+ FV + AI +
Sbjct: 106 VFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAIDDI 165
Query: 291 DGQSLGGRTIRVNVAEDRPR 310
+ G+T+R ++E + R
Sbjct: 166 HNKEFKGKTLRCLLSETKHR 185
>Medtr7g118120.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025533-49031887 | 20130731
Length = 479
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 75/151 (49%), Gaps = 18/151 (11%)
Query: 133 AKLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVD 192
+++F+G LP D + EL +G + ++I +RET +S+G+ FV KT E A+KA+D
Sbjct: 104 SEVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAID 163
Query: 193 KLNGYDFGGRLLTVNKAAPRGSRPERAPRSFDAQPAFRVYVGNLPWDFDNSQLEQVFSEH 252
++ +F G+ L R ++ R+++GN+P + + +
Sbjct: 164 DIHNKEFKGKTL----------------RCLLSETKHRLFIGNIPKTWTEDEFRKAVEGV 207
Query: 253 GK-VVSARVVYD-RETGRSRGFGFVTMSDEA 281
G V S ++ D + R+RGF FV + A
Sbjct: 208 GPGVESIDLIKDPQNQSRNRGFAFVLYYNNA 238
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 87/179 (48%), Gaps = 13/179 (7%)
Query: 134 KLFVGNLPYDADGHKLAELFNQVG----TVDLAEVIYNRETDQSRGFGFVTMKTVEDAEK 189
+LF+GN+P + + VG ++DL + N+ ++RGF FV A+
Sbjct: 185 RLFIGNIPKTWTEDEFRKAVEGVGPGVESIDLIKDPQNQ--SRNRGFAFVLYYNNACADF 242
Query: 190 AVDKLN--GYDFGGRLLTVNKAAPRGSRPERAPRSFDAQPAFRVYVGNLPWDFDNSQLEQ 247
+ K++ G+ G TV A P+ S P++ S A +YV N+P + QL++
Sbjct: 243 SRQKMSSVGFKLDGITPTVTWADPKTS-PDQ---SAAASQVKALYVKNIPENVTTEQLKE 298
Query: 248 VFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQSLGGRTIRVNVAE 306
+F HG+V + + +G+ R FGF+ ++ + A+ + + G+ + V +A+
Sbjct: 299 LFRRHGEVTKVVMPPGKASGK-RDFGFIHYAERSSALKAVKETEKYEIDGQALEVVIAK 356
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 43/80 (53%)
Query: 231 VYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAAL 290
V++G LP D + + ++ G +V +++ DRETG S+G+ FV + AI +
Sbjct: 106 VFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAIDDI 165
Query: 291 DGQSLGGRTIRVNVAEDRPR 310
+ G+T+R ++E + R
Sbjct: 166 HNKEFKGKTLRCLLSETKHR 185
>Medtr7g118120.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025861-49031887 | 20130731
Length = 479
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 75/151 (49%), Gaps = 18/151 (11%)
Query: 133 AKLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVD 192
+++F+G LP D + EL +G + ++I +RET +S+G+ FV KT E A+KA+D
Sbjct: 104 SEVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAID 163
Query: 193 KLNGYDFGGRLLTVNKAAPRGSRPERAPRSFDAQPAFRVYVGNLPWDFDNSQLEQVFSEH 252
++ +F G+ L R ++ R+++GN+P + + +
Sbjct: 164 DIHNKEFKGKTL----------------RCLLSETKHRLFIGNIPKTWTEDEFRKAVEGV 207
Query: 253 GK-VVSARVVYD-RETGRSRGFGFVTMSDEA 281
G V S ++ D + R+RGF FV + A
Sbjct: 208 GPGVESIDLIKDPQNQSRNRGFAFVLYYNNA 238
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 87/179 (48%), Gaps = 13/179 (7%)
Query: 134 KLFVGNLPYDADGHKLAELFNQVG----TVDLAEVIYNRETDQSRGFGFVTMKTVEDAEK 189
+LF+GN+P + + VG ++DL + N+ ++RGF FV A+
Sbjct: 185 RLFIGNIPKTWTEDEFRKAVEGVGPGVESIDLIKDPQNQ--SRNRGFAFVLYYNNACADF 242
Query: 190 AVDKLN--GYDFGGRLLTVNKAAPRGSRPERAPRSFDAQPAFRVYVGNLPWDFDNSQLEQ 247
+ K++ G+ G TV A P+ S P++ S A +YV N+P + QL++
Sbjct: 243 SRQKMSSVGFKLDGITPTVTWADPKTS-PDQ---SAAASQVKALYVKNIPENVTTEQLKE 298
Query: 248 VFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQSLGGRTIRVNVAE 306
+F HG+V + + +G+ R FGF+ ++ + A+ + + G+ + V +A+
Sbjct: 299 LFRRHGEVTKVVMPPGKASGK-RDFGFIHYAERSSALKAVKETEKYEIDGQALEVVIAK 356
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 43/80 (53%)
Query: 231 VYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAAL 290
V++G LP D + + ++ G +V +++ DRETG S+G+ FV + AI +
Sbjct: 106 VFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAIDDI 165
Query: 291 DGQSLGGRTIRVNVAEDRPR 310
+ G+T+R ++E + R
Sbjct: 166 HNKEFKGKTLRCLLSETKHR 185
>Medtr5g070100.1 | RNA recognition motif (RRM) containing protein |
HC | chr5:29707444-29702897 | 20130731
Length = 393
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 47/73 (64%)
Query: 231 VYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAAL 290
V+VG +P+DF + VF+++G+VV +V D+ TG+S+GF F+ D+ N A+ L
Sbjct: 38 VFVGGIPFDFTEGDVIAVFAQYGEVVDINLVRDKGTGKSKGFAFIAYEDQRSTNLAVDNL 97
Query: 291 DGQSLGGRTIRVN 303
+G + GR IRV+
Sbjct: 98 NGAQVSGRIIRVD 110
>Medtr3g014000.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:3865418-3863915 | 20130731
Length = 138
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 52/85 (61%), Gaps = 11/85 (12%)
Query: 231 VYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAE-------L 283
+++G + ++ L + FS +GKV+ A+++ DRETGR RGFGFVT + E +
Sbjct: 36 LFLGGISYN----TLRKHFSLYGKVLDAKIIRDRETGRPRGFGFVTFATTEEASAALQTM 91
Query: 284 NDAIAALDGQSLGGRTIRVNVAEDR 308
+ AI ++ Q L GR +RVN A ++
Sbjct: 92 SLAIKSMKNQDLYGRKVRVNYATEK 116
>Medtr7g104800.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42489150-42483010 | 20130731
Length = 477
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 79/151 (52%), Gaps = 21/151 (13%)
Query: 133 AKLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVD 192
+++++G +P++ L VG V V+ +E ++G+ FVT KT E A KA+
Sbjct: 101 SEVYIGGIPHETSEKDLRVFCQSVGEVAEVRVMKGKE---AKGYAFVTFKTKELASKALK 157
Query: 193 KLNGYDFGGRLLTVNKAAPRGSRPERAPRSFDAQPAFRVYVGNLPWDFDNSQLEQVFSEH 252
+LN +F GR + K +P +Q R+++G++P ++ +++V ++
Sbjct: 158 ELNNSEFKGRKI---KCSP-------------SQVKHRLFIGSVPKEWTVEDMKKVVAKV 201
Query: 253 GK-VVSARVVYD-RETGRSRGFGFVTMSDEA 281
G V+S ++ D + + R+RGF F+ + A
Sbjct: 202 GPGVISVELLKDPQSSSRNRGFAFIEYHNHA 232
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 85/175 (48%), Gaps = 6/175 (3%)
Query: 134 KLFVGNLPYDADGHKLAELFNQVGT-VDLAEVIYN-RETDQSRGFGFVTMKTVEDAEKAV 191
+LF+G++P + + ++ +VG V E++ + + + ++RGF F+ AE +
Sbjct: 179 RLFIGSVPKEWTVEDMKKVVAKVGPGVISVELLKDPQSSSRNRGFAFIEYHNHACAEYSR 238
Query: 192 DKLNGYDFGGRLLTVNKAAPRGSRPERAPRSFDAQPAFRVYVGNLPWDFDNSQLEQVFSE 251
K++ +F L N A + P + S +Q VYV NLP + ++L+++F
Sbjct: 239 QKMSNSNFK---LDNNDAIVSWADPRNSESSSSSQ-VKAVYVKNLPENITQNRLKELFEH 294
Query: 252 HGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQSLGGRTIRVNVAE 306
HGK+ + + +GFV +D + A+ + + G+T+ ++A+
Sbjct: 295 HGKITKVALPPAKAGQEKSRYGFVHFADRSSAMKALKNTEKYEINGQTLECSLAK 349
>Medtr7g104800.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42489150-42483010 | 20130731
Length = 477
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 79/151 (52%), Gaps = 21/151 (13%)
Query: 133 AKLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVD 192
+++++G +P++ L VG V V+ +E ++G+ FVT KT E A KA+
Sbjct: 101 SEVYIGGIPHETSEKDLRVFCQSVGEVAEVRVMKGKE---AKGYAFVTFKTKELASKALK 157
Query: 193 KLNGYDFGGRLLTVNKAAPRGSRPERAPRSFDAQPAFRVYVGNLPWDFDNSQLEQVFSEH 252
+LN +F GR + K +P +Q R+++G++P ++ +++V ++
Sbjct: 158 ELNNSEFKGRKI---KCSP-------------SQVKHRLFIGSVPKEWTVEDMKKVVAKV 201
Query: 253 GK-VVSARVVYD-RETGRSRGFGFVTMSDEA 281
G V+S ++ D + + R+RGF F+ + A
Sbjct: 202 GPGVISVELLKDPQSSSRNRGFAFIEYHNHA 232
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 85/175 (48%), Gaps = 6/175 (3%)
Query: 134 KLFVGNLPYDADGHKLAELFNQVGT-VDLAEVIYN-RETDQSRGFGFVTMKTVEDAEKAV 191
+LF+G++P + + ++ +VG V E++ + + + ++RGF F+ AE +
Sbjct: 179 RLFIGSVPKEWTVEDMKKVVAKVGPGVISVELLKDPQSSSRNRGFAFIEYHNHACAEYSR 238
Query: 192 DKLNGYDFGGRLLTVNKAAPRGSRPERAPRSFDAQPAFRVYVGNLPWDFDNSQLEQVFSE 251
K++ +F L N A + P + S +Q VYV NLP + ++L+++F
Sbjct: 239 QKMSNSNFK---LDNNDAIVSWADPRNSESSSSSQ-VKAVYVKNLPENITQNRLKELFEH 294
Query: 252 HGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQSLGGRTIRVNVAE 306
HGK+ + + +GFV +D + A+ + + G+T+ ++A+
Sbjct: 295 HGKITKVALPPAKAGQEKSRYGFVHFADRSSAMKALKNTEKYEINGQTLECSLAK 349
>Medtr7g104800.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42488464-42483010 | 20130731
Length = 477
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 79/151 (52%), Gaps = 21/151 (13%)
Query: 133 AKLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVD 192
+++++G +P++ L VG V V+ +E ++G+ FVT KT E A KA+
Sbjct: 101 SEVYIGGIPHETSEKDLRVFCQSVGEVAEVRVMKGKE---AKGYAFVTFKTKELASKALK 157
Query: 193 KLNGYDFGGRLLTVNKAAPRGSRPERAPRSFDAQPAFRVYVGNLPWDFDNSQLEQVFSEH 252
+LN +F GR + K +P +Q R+++G++P ++ +++V ++
Sbjct: 158 ELNNSEFKGRKI---KCSP-------------SQVKHRLFIGSVPKEWTVEDMKKVVAKV 201
Query: 253 GK-VVSARVVYD-RETGRSRGFGFVTMSDEA 281
G V+S ++ D + + R+RGF F+ + A
Sbjct: 202 GPGVISVELLKDPQSSSRNRGFAFIEYHNHA 232
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 85/175 (48%), Gaps = 6/175 (3%)
Query: 134 KLFVGNLPYDADGHKLAELFNQVGT-VDLAEVIYN-RETDQSRGFGFVTMKTVEDAEKAV 191
+LF+G++P + + ++ +VG V E++ + + + ++RGF F+ AE +
Sbjct: 179 RLFIGSVPKEWTVEDMKKVVAKVGPGVISVELLKDPQSSSRNRGFAFIEYHNHACAEYSR 238
Query: 192 DKLNGYDFGGRLLTVNKAAPRGSRPERAPRSFDAQPAFRVYVGNLPWDFDNSQLEQVFSE 251
K++ +F L N A + P + S +Q VYV NLP + ++L+++F
Sbjct: 239 QKMSNSNFK---LDNNDAIVSWADPRNSESSSSSQ-VKAVYVKNLPENITQNRLKELFEH 294
Query: 252 HGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQSLGGRTIRVNVAE 306
HGK+ + + +GFV +D + A+ + + G+T+ ++A+
Sbjct: 295 HGKITKVALPPAKAGQEKSRYGFVHFADRSSAMKALKNTEKYEINGQTLECSLAK 349
>Medtr7g104800.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42489150-42483010 | 20130731
Length = 477
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 79/151 (52%), Gaps = 21/151 (13%)
Query: 133 AKLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVD 192
+++++G +P++ L VG V V+ +E ++G+ FVT KT E A KA+
Sbjct: 101 SEVYIGGIPHETSEKDLRVFCQSVGEVAEVRVMKGKE---AKGYAFVTFKTKELASKALK 157
Query: 193 KLNGYDFGGRLLTVNKAAPRGSRPERAPRSFDAQPAFRVYVGNLPWDFDNSQLEQVFSEH 252
+LN +F GR + K +P +Q R+++G++P ++ +++V ++
Sbjct: 158 ELNNSEFKGRKI---KCSP-------------SQVKHRLFIGSVPKEWTVEDMKKVVAKV 201
Query: 253 GK-VVSARVVYD-RETGRSRGFGFVTMSDEA 281
G V+S ++ D + + R+RGF F+ + A
Sbjct: 202 GPGVISVELLKDPQSSSRNRGFAFIEYHNHA 232
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 85/175 (48%), Gaps = 6/175 (3%)
Query: 134 KLFVGNLPYDADGHKLAELFNQVGT-VDLAEVIYN-RETDQSRGFGFVTMKTVEDAEKAV 191
+LF+G++P + + ++ +VG V E++ + + + ++RGF F+ AE +
Sbjct: 179 RLFIGSVPKEWTVEDMKKVVAKVGPGVISVELLKDPQSSSRNRGFAFIEYHNHACAEYSR 238
Query: 192 DKLNGYDFGGRLLTVNKAAPRGSRPERAPRSFDAQPAFRVYVGNLPWDFDNSQLEQVFSE 251
K++ +F L N A + P + S +Q VYV NLP + ++L+++F
Sbjct: 239 QKMSNSNFK---LDNNDAIVSWADPRNSESSSSSQ-VKAVYVKNLPENITQNRLKELFEH 294
Query: 252 HGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQSLGGRTIRVNVAE 306
HGK+ + + +GFV +D + A+ + + G+T+ ++A+
Sbjct: 295 HGKITKVALPPAKAGQEKSRYGFVHFADRSSAMKALKNTEKYEINGQTLECSLAK 349
>Medtr1g080390.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:35718041-35708690 | 20130731
Length = 962
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 47/86 (54%)
Query: 226 QPAFRVYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELND 285
Q ++V NLP+ F NSQLEQ FSE G V +V + + + RGFG+V + E + N
Sbjct: 18 QCPLTLFVSNLPYSFTNSQLEQTFSEVGPVRRCFMVTQKGSTQHRGFGYVQFAVEKDANQ 77
Query: 286 AIAALDGQSLGGRTIRVNVAEDRPRR 311
AI + +G R I V A RP R
Sbjct: 78 AIELKNSSLVGDRKIVVKHAIPRPPR 103
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 46/79 (58%)
Query: 134 KLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDK 193
KL V NLP+ A +++ + F+ GTV + +T S+GF FV +DAE A+ K
Sbjct: 283 KLIVRNLPFKAKENEIRDAFSSAGTVWEVFIPQKSDTGLSKGFAFVKFTCKQDAENAIRK 342
Query: 194 LNGYDFGGRLLTVNKAAPR 212
LNG FG RL+ V+ A P+
Sbjct: 343 LNGSKFGSRLIAVDWAVPK 361
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 44/84 (52%)
Query: 135 LFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDKL 194
LFV NLPY +L + F++VG V ++ + + Q RGFG+V +DA +A++
Sbjct: 23 LFVSNLPYSFTNSQLEQTFSEVGPVRRCFMVTQKGSTQHRGFGYVQFAVEKDANQAIELK 82
Query: 195 NGYDFGGRLLTVNKAAPRGSRPER 218
N G R + V A PR R R
Sbjct: 83 NSSLVGDRKIVVKHAIPRPPRENR 106
>Medtr3g095230.2 | CC1-like splicing factor | LC |
chr3:43513031-43520987 | 20130731
Length = 576
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 82/189 (43%), Gaps = 26/189 (13%)
Query: 135 LFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDKL 194
+F +P A + E F++ G V +I +R + +S+G G++ A+
Sbjct: 217 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAI--- 273
Query: 195 NGYDFGGRLLTVNKAAPRGSRPERAPRSFDAQPAF---------------RVYVGNLPWD 239
G+LL P +P A ++ ++YVGNL ++
Sbjct: 274 ---ALSGQLLL---GQPVMVKPSEAEKNLVQSNTTTGAAGVVGPYGAVDRKLYVGNLHFN 327
Query: 240 FDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQ-SLGGR 298
SQL ++F G V ++ D ETG +GFGF+ + E A +L+G+ + GR
Sbjct: 328 MTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFA-HIEHAKAAQSLNGKLEIAGR 386
Query: 299 TIRVNVAED 307
TI+V+ D
Sbjct: 387 TIKVSSVAD 395
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 134 KLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDK 193
KL+VGNL ++ +L E+F GTV++ ++ + ET +GFGF+ +E A KA
Sbjct: 318 KLYVGNLHFNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHA-KAAQS 376
Query: 194 LNG-YDFGGRLLTVNKAA 210
LNG + GR + V+ A
Sbjct: 377 LNGKLEIAGRTIKVSSVA 394
>Medtr3g095230.3 | CC1-like splicing factor | LC |
chr3:43513031-43520279 | 20130731
Length = 576
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 82/189 (43%), Gaps = 26/189 (13%)
Query: 135 LFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDKL 194
+F +P A + E F++ G V +I +R + +S+G G++ A+
Sbjct: 217 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAI--- 273
Query: 195 NGYDFGGRLLTVNKAAPRGSRPERAPRSFDAQPAF---------------RVYVGNLPWD 239
G+LL P +P A ++ ++YVGNL ++
Sbjct: 274 ---ALSGQLLL---GQPVMVKPSEAEKNLVQSNTTTGAAGVVGPYGAVDRKLYVGNLHFN 327
Query: 240 FDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQ-SLGGR 298
SQL ++F G V ++ D ETG +GFGF+ + E A +L+G+ + GR
Sbjct: 328 MTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFA-HIEHAKAAQSLNGKLEIAGR 386
Query: 299 TIRVNVAED 307
TI+V+ D
Sbjct: 387 TIKVSSVAD 395
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 134 KLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDK 193
KL+VGNL ++ +L E+F GTV++ ++ + ET +GFGF+ +E A KA
Sbjct: 318 KLYVGNLHFNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHA-KAAQS 376
Query: 194 LNG-YDFGGRLLTVNKAA 210
LNG + GR + V+ A
Sbjct: 377 LNGKLEIAGRTIKVSSVA 394
>Medtr3g095230.1 | CC1-like splicing factor | LC |
chr3:43513030-43521003 | 20130731
Length = 587
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 82/189 (43%), Gaps = 26/189 (13%)
Query: 135 LFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDKL 194
+F +P A + E F++ G V +I +R + +S+G G++ A+
Sbjct: 217 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAI--- 273
Query: 195 NGYDFGGRLLTVNKAAPRGSRPERAPRSFDAQPAF---------------RVYVGNLPWD 239
G+LL P +P A ++ ++YVGNL ++
Sbjct: 274 ---ALSGQLLL---GQPVMVKPSEAEKNLVQSNTTTGAAGVVGPYGAVDRKLYVGNLHFN 327
Query: 240 FDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQ-SLGGR 298
SQL ++F G V ++ D ETG +GFGF+ + E A +L+G+ + GR
Sbjct: 328 MTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFA-HIEHAKAAQSLNGKLEIAGR 386
Query: 299 TIRVNVAED 307
TI+V+ D
Sbjct: 387 TIKVSSVAD 395
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 134 KLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDK 193
KL+VGNL ++ +L E+F GTV++ ++ + ET +GFGF+ +E A KA
Sbjct: 318 KLYVGNLHFNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHA-KAAQS 376
Query: 194 LNG-YDFGGRLLTVNKAA 210
LNG + GR + V+ A
Sbjct: 377 LNGKLEIAGRTIKVSSVA 394
>Medtr8g031560.1 | eukaryotic translation initiation factor 3
subunit G | HC | chr8:11851079-11853472 | 20130731
Length = 280
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 42/76 (55%)
Query: 137 VGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDKLNG 196
V NL D L ELF G+V V ++ T SRGFGFV EDA++A++KLNG
Sbjct: 203 VTNLSEDTREPDLHELFGTFGSVSRVYVAIDKNTGTSRGFGFVNFVNREDAQRAINKLNG 262
Query: 197 YDFGGRLLTVNKAAPR 212
Y + +L V A PR
Sbjct: 263 YGYDNLILKVEWATPR 278
>Medtr7g107580.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890650-43885583 | 20130731
Length = 433
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 224 DAQPAFRVYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAEL 283
+ P +++ ++P +F + +L F G+V+SA+V D+ TG S+ FGFV+
Sbjct: 343 EGPPGANLFIYHIPQEFGDQELANAFQPFGRVLSAKVFVDKATGVSKCFGFVSYDSPEAA 402
Query: 284 NDAIAALDGQSLGGRTIRVNVAED-RPRRSF 313
AI+ ++G LGG+ ++V D +P + +
Sbjct: 403 QSAISMMNGCQLGGKKLKVQHKRDNKPGKPY 433
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 77/163 (47%), Gaps = 15/163 (9%)
Query: 134 KLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDK 193
KLFVG +P +L LF + VD +I ++ T SRG FV + ++A+KAV+
Sbjct: 17 KLFVGQVPKHMTEDELLTLFKEFAIVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNA 76
Query: 194 LNGYDFGGRLLTVNKAAPRGSRPERAPRSFDAQ---PAFRVYVGNLPWDFDNSQLEQVFS 250
+ K P S P + + D + ++++G LP + ++ +FS
Sbjct: 77 CHN----------KKTLPGASSPLQV-KYADGELERLEHKLFIGMLPKNISEVEVSALFS 125
Query: 251 EHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQ 293
++G + +++ + S+G F+ + + A+ A++G+
Sbjct: 126 KYGTIKDLQILRGSQQ-TSKGCAFLKYETKEQALAALEAINGK 167
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%)
Query: 133 AKLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVD 192
A LF+ ++P + +LA F G V A+V ++ T S+ FGFV+ + E A+ A+
Sbjct: 348 ANLFIYHIPQEFGDQELANAFQPFGRVLSAKVFVDKATGVSKCFGFVSYDSPEAAQSAIS 407
Query: 193 KLNGYDFGGRLLTV 206
+NG GG+ L V
Sbjct: 408 MMNGCQLGGKKLKV 421
>Medtr7g107580.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890585-43885643 | 20130731
Length = 434
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 224 DAQPAFRVYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAEL 283
+ P +++ ++P +F + +L F G+V+SA+V D+ TG S+ FGFV+
Sbjct: 344 EGPPGANLFIYHIPQEFGDQELANAFQPFGRVLSAKVFVDKATGVSKCFGFVSYDSPEAA 403
Query: 284 NDAIAALDGQSLGGRTIRVNVAED-RPRRSF 313
AI+ ++G LGG+ ++V D +P + +
Sbjct: 404 QSAISMMNGCQLGGKKLKVQHKRDNKPGKPY 434
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 75/163 (46%), Gaps = 14/163 (8%)
Query: 134 KLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDK 193
KLFVG +P +L LF + VD +I ++ T SRG FV + ++A+KAV+
Sbjct: 17 KLFVGQVPKHMTEDELLTLFKEFAIVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNA 76
Query: 194 LNGYDFGGRLLTVNKAAPRGSRPERAPRSFDAQ---PAFRVYVGNLPWDFDNSQLEQVFS 250
+ K P S P + + D + ++++G LP + ++ +FS
Sbjct: 77 CHN----------KKTLPGASSPLQV-KYADGELERLEHKLFIGMLPKNISEVEVSALFS 125
Query: 251 EHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQ 293
++G + +++ + G F+ + + A+ A++G+
Sbjct: 126 KYGTIKDLQILRGSQQTSKVGCAFLKYETKEQALAALEAINGK 168
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%)
Query: 133 AKLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVD 192
A LF+ ++P + +LA F G V A+V ++ T S+ FGFV+ + E A+ A+
Sbjct: 349 ANLFIYHIPQEFGDQELANAFQPFGRVLSAKVFVDKATGVSKCFGFVSYDSPEAAQSAIS 408
Query: 193 KLNGYDFGGRLLTV 206
+NG GG+ L V
Sbjct: 409 MMNGCQLGGKKLKV 422
>Medtr8g107310.1 | eukaryotic translation initiation factor 3
subunit G | HC | chr8:45339610-45341085 | 20130731
Length = 292
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 43/76 (56%)
Query: 137 VGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDKLNG 196
V NL D L ELF G V V +++T SRGFGFV + EDA++A++KLNG
Sbjct: 215 VTNLSEDTREPDLLELFRPFGAVSRVYVAIDQKTGMSRGFGFVNFVSREDAQRAINKLNG 274
Query: 197 YDFGGRLLTVNKAAPR 212
Y + +L V A PR
Sbjct: 275 YGYDNLILRVEWATPR 290
>Medtr8g092550.1 | CC1-like splicing factor | HC |
chr8:38688579-38694751 | 20130731
Length = 567
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 84/190 (44%), Gaps = 29/190 (15%)
Query: 135 LFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDKL 194
+F +P A + E F++ G V +I +R + +S+G G++ A+
Sbjct: 204 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIA-- 261
Query: 195 NGYDFGGRLLTVNKAAPRGSRPERAPRSFDAQPAF--------------RVYVGNLPWDF 240
G+LL P +P A ++ A ++YVGNL ++
Sbjct: 262 ----LSGQLLL---GQPVMVKPSEAEKNLVQSNASSGAAVVGPYGAVDRKLYVGNLHFNM 314
Query: 241 DNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAA--LDGQ-SLGG 297
+ L ++F G++ ++ D ETG +GFGFV A L A AA L+G+ + G
Sbjct: 315 TEANLREIFEPFGQIEVVQLPLDMETGHCKGFGFVQF---AHLEHAKAAQSLNGKLEIAG 371
Query: 298 RTIRVNVAED 307
RTI+V+ D
Sbjct: 372 RTIKVSSVTD 381
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 134 KLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDK 193
KL+VGNL ++ L E+F G +++ ++ + ET +GFGFV +E A KA
Sbjct: 304 KLYVGNLHFNMTEANLREIFEPFGQIEVVQLPLDMETGHCKGFGFVQFAHLEHA-KAAQS 362
Query: 194 LNG-YDFGGRLLTVN 207
LNG + GR + V+
Sbjct: 363 LNGKLEIAGRTIKVS 377
>Medtr7g094660.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:37745112-37734961 | 20130731
Length = 865
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 49/85 (57%)
Query: 133 AKLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVD 192
+LFV NLPY +L E F+Q G+V A ++ +++T +S+G ++ E A +A++
Sbjct: 329 CRLFVRNLPYSTTEEELEEHFSQFGSVSQAHLVVDKDTKRSKGIAYIHFSAPEFAARALE 388
Query: 193 KLNGYDFGGRLLTVNKAAPRGSRPE 217
+ + F GRLL V A PR S E
Sbjct: 389 ESDNSIFQGRLLHVMPAIPRHSNNE 413
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 80/179 (44%), Gaps = 9/179 (5%)
Query: 135 LFVGNLPYDADGHKLAELFNQ------VGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAE 188
LFV NL + L E F++ + +V + + + N + + S GFGFV + E A
Sbjct: 643 LFVKNLNFKTTDEVLREHFSEHMKEGRILSVKVKKHLKNGK-NVSMGFGFVEFDSTETAT 701
Query: 189 KAVDKLNGYDFGGRLLTVNKAAPRGSRPERAPRSFDAQPAFRVYVGNLPWDFDNSQLEQV 248
+ L G G L + + + + + + ++ V N+ ++ L Q+
Sbjct: 702 SVCNDLQGTVLDGHALILQLCHVKNDDDKVQKKVEKDKSSTKLLVKNVAFEATEKDLRQL 761
Query: 249 FSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQSLGGRTIRVNVAED 307
FS G++ S R+ + G RGF FV + E +A+ AL L GR + + A++
Sbjct: 762 FSPFGQIKSLRLPM--KFGNHRGFAFVEYVTQQEAQNALTALSSTHLYGRHLVIERAKE 818
>Medtr3g092490.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251169-42253131 | 20130731
Length = 178
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Query: 230 RVYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAA 289
+++VG L W+ L++ F + G ++ A V+ DR TG+S+G+GFVT D N AI A
Sbjct: 27 KIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDP---NSAILA 83
Query: 290 LDGQS--LGGRTIRVNVAEDRP 309
+ + GR N+A +P
Sbjct: 84 CQNPNPMIDGRRANCNLAYQKP 105
>Medtr3g092490.4 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251169-42253131 | 20130731
Length = 178
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Query: 230 RVYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAA 289
+++VG L W+ L++ F + G ++ A V+ DR TG+S+G+GFVT D N AI A
Sbjct: 27 KIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDP---NSAILA 83
Query: 290 LDGQS--LGGRTIRVNVAEDRP 309
+ + GR N+A +P
Sbjct: 84 CQNPNPMIDGRRANCNLAYQKP 105
>Medtr3g029580.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:9308768-9310458 | 20130731
Length = 134
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 45/79 (56%)
Query: 133 AKLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVD 192
+K+FV L + KLAE F+Q G V A+++ N+ + +GFG+VT E+A KA
Sbjct: 32 SKIFVKGLAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARKAQI 91
Query: 193 KLNGYDFGGRLLTVNKAAP 211
+NG GR+L V+ P
Sbjct: 92 GMNGKILHGRVLYVDMDPP 110
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 45/75 (60%)
Query: 230 RVYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAA 289
+++V L + +L + FS++G VV A +V ++ R +GFG+VT ++E E A
Sbjct: 33 KIFVKGLAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARKAQIG 92
Query: 290 LDGQSLGGRTIRVNV 304
++G+ L GR + V++
Sbjct: 93 MNGKILHGRVLYVDM 107
>Medtr2g096560.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:41240036-41242642 | 20130731
Length = 89
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 46/81 (56%)
Query: 134 KLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDK 193
KLFV L + +L LF+ G + A +I ++ T + +GFGFV+ K+ +AEKA
Sbjct: 8 KLFVSRLSFYTTQQQLESLFSPFGVLTEATLITDQNTQRPKGFGFVSYKSEIEAEKARKA 67
Query: 194 LNGYDFGGRLLTVNKAAPRGS 214
LNG GRL+ V A P+ S
Sbjct: 68 LNGRIVDGRLIFVEHAKPKDS 88
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 44/79 (55%)
Query: 230 RVYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAA 289
+++V L + QLE +FS G + A ++ D+ T R +GFGFV+ E E A A
Sbjct: 8 KLFVSRLSFYTTQQQLESLFSPFGVLTEATLITDQNTQRPKGFGFVSYKSEIEAEKARKA 67
Query: 290 LDGQSLGGRTIRVNVAEDR 308
L+G+ + GR I V A+ +
Sbjct: 68 LNGRIVDGRLIFVEHAKPK 86
>Medtr3g092490.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251226-42253109 | 20130731
Length = 251
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Query: 230 RVYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAA 289
+++VG L W+ L++ F + G ++ A V+ DR TG+S+G+GFVT D N AI A
Sbjct: 27 KIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDP---NSAILA 83
Query: 290 LDGQS--LGGRTIRVNVAEDRP 309
+ + GR N+A +P
Sbjct: 84 CQNPNPMIDGRRANCNLAYQKP 105
>Medtr3g092490.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251169-42253164 | 20130731
Length = 250
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Query: 230 RVYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAA 289
+++VG L W+ L++ F + G ++ A V+ DR TG+S+G+GFVT D N AI A
Sbjct: 27 KIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDP---NSAILA 83
Query: 290 LDGQS--LGGRTIRVNVAEDRP 309
+ + GR N+A +P
Sbjct: 84 CQNPNPMIDGRRANCNLAYQKP 105
>Medtr4g068120.2 | flowering time control FPA-like protein | HC |
chr4:25458538-25448035 | 20130731
Length = 973
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 75/172 (43%), Gaps = 31/172 (18%)
Query: 135 LFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDKL 194
L+V NL D L +LF Q G +D + +R + FV K ++DA+ A + L
Sbjct: 29 LYVANLSPDVTDSDLMDLFVQYGALDSV------TSYSARNYAFVFFKRIDDAKAAKNAL 82
Query: 195 NGYDFGGRLLTVNKAAPRGSRPERAPRSFDAQPAFRVYVGNLPWDFDNSQLEQVFSEHGK 254
G++F G L + A P A+ +++VG + LE F + GK
Sbjct: 83 QGFNFRGNSLRIEFARP-------------AKTCKQLWVGGISPAVTKEDLEADFRKFGK 129
Query: 255 VVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAA---LDGQSLGGRTIRVN 303
V + DR T F L+DAI A ++G+ +GG IRV+
Sbjct: 130 VEDFKFFRDRNTACVEFF---------NLDDAIQAMKIMNGKHIGGENIRVD 172
>Medtr4g068120.1 | flowering time control FPA-like protein | HC |
chr4:25458538-25450507 | 20130731
Length = 973
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 75/172 (43%), Gaps = 31/172 (18%)
Query: 135 LFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDKL 194
L+V NL D L +LF Q G +D + +R + FV K ++DA+ A + L
Sbjct: 29 LYVANLSPDVTDSDLMDLFVQYGALDSV------TSYSARNYAFVFFKRIDDAKAAKNAL 82
Query: 195 NGYDFGGRLLTVNKAAPRGSRPERAPRSFDAQPAFRVYVGNLPWDFDNSQLEQVFSEHGK 254
G++F G L + A P A+ +++VG + LE F + GK
Sbjct: 83 QGFNFRGNSLRIEFARP-------------AKTCKQLWVGGISPAVTKEDLEADFRKFGK 129
Query: 255 VVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAA---LDGQSLGGRTIRVN 303
V + DR T F L+DAI A ++G+ +GG IRV+
Sbjct: 130 VEDFKFFRDRNTACVEFF---------NLDDAIQAMKIMNGKHIGGENIRVD 172
>Medtr4g063560.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:23466507-23467712 | 20130731
Length = 112
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 43/78 (55%)
Query: 230 RVYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAA 289
++++ L ++ + + L F +HG+++ +V+ + TG S+G+GFV + E A
Sbjct: 34 KLFIAGLSYNTNETVLRDTFEQHGQIIEVKVICNHRTGESKGYGFVRFNSETAAATARKE 93
Query: 290 LDGQSLGGRTIRVNVAED 307
L GQ + GR IRV A
Sbjct: 94 LHGQIVDGRRIRVGYAHK 111
>Medtr1g080150.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:35593441-35588449 | 20130731
Length = 240
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 53/85 (62%)
Query: 229 FRVYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIA 288
+R++ G+L + ++ L + F+ ARVV D+ TG+++G+GF++ ++ A+L A+
Sbjct: 132 YRLFCGDLGNEVNDDVLSKAFTRFPSFNMARVVRDKRTGKTKGYGFISFANPADLAAALK 191
Query: 289 ALDGQSLGGRTIRVNVAEDRPRRSF 313
++G+ +G R I++ ++ R R +
Sbjct: 192 EMNGKYVGNRPIKLRKSKWRERTDY 216
>Medtr7g099940.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:40168782-40171275 | 20130731
Length = 141
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 47/82 (57%)
Query: 134 KLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDK 193
KLF+ L KL E F+ G + A+VI +R + +S+GF FV+ T+E+AEKA +
Sbjct: 36 KLFISGLSRLTTDEKLTEAFSPFGQLLEAKVITDRGSGRSKGFAFVSYSTIEEAEKAREG 95
Query: 194 LNGYDFGGRLLTVNKAAPRGSR 215
+N G ++ V+ A PR R
Sbjct: 96 MNAKFLDGWVIFVDPAKPREPR 117
>Medtr4g081520.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:31628430-31625444 | 20130731
Length = 144
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 44/85 (51%)
Query: 225 AQPAFRVYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELN 284
A+P+ ++V L L + F + G+VV ARVV DR +G S+GFGFV + +
Sbjct: 47 AEPSTNLFVSGLSKRTTTETLREAFQKFGEVVHARVVTDRVSGYSKGFGFVKYATLEDAA 106
Query: 285 DAIAALDGQSLGGRTIRVNVAEDRP 309
I +DG+ L G I A RP
Sbjct: 107 KGIEGMDGKFLEGWVIFAEYARPRP 131
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 40/78 (51%)
Query: 135 LFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDKL 194
LFV L L E F + G V A V+ +R + S+GFGFV T+EDA K ++ +
Sbjct: 53 LFVSGLSKRTTTETLREAFQKFGEVVHARVVTDRVSGYSKGFGFVKYATLEDAAKGIEGM 112
Query: 195 NGYDFGGRLLTVNKAAPR 212
+G G ++ A PR
Sbjct: 113 DGKFLEGWVIFAEYARPR 130
>Medtr7g094670.1 | mRNA capping enzyme, putative | LC |
chr7:37775862-37750453 | 20130731
Length = 1678
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 47/85 (55%)
Query: 133 AKLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVD 192
+LFV NLPY +L E F+Q G+V ++ +++T +S+G F+ E A +A++
Sbjct: 899 CRLFVRNLPYSTTEEELEEHFSQFGSVSQVHLVVDKDTKRSKGRAFIHFSVPEFAARALE 958
Query: 193 KLNGYDFGGRLLTVNKAAPRGSRPE 217
+ + F GRLL V A P S E
Sbjct: 959 ESDNSIFQGRLLHVIAAIPIHSNNE 983
>Medtr8g007390.3 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 799
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 75/160 (46%), Gaps = 19/160 (11%)
Query: 134 KLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDK 193
++FVG L DA L ++F++VG V ++ N +T +++GF F+ + VE A++AV +
Sbjct: 215 EVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAE 274
Query: 194 LNGYDFGGRLLTVNKAAPRGSRPERAPRSFDAQPAFRVYVGNLPWDFDNSQLEQVFSEHG 253
L G+ V +Q + +Y+GN+ + L++ +G
Sbjct: 275 LKNPVINGKQCGVTP----------------SQDSDTLYLGNICKTWTKEALKEKLKHYG 318
Query: 254 --KVVSARVVYD-RETGRSRGFGFVTMSDEAELNDAIAAL 290
V +V D + G +RGF F+ S ++ DA L
Sbjct: 319 VTNVEDITLVEDSNDKGTNRGFAFLEFSSRSDAMDAFKRL 358
>Medtr8g007390.4 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 799
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 75/160 (46%), Gaps = 19/160 (11%)
Query: 134 KLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDK 193
++FVG L DA L ++F++VG V ++ N +T +++GF F+ + VE A++AV +
Sbjct: 215 EVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAE 274
Query: 194 LNGYDFGGRLLTVNKAAPRGSRPERAPRSFDAQPAFRVYVGNLPWDFDNSQLEQVFSEHG 253
L G+ V +Q + +Y+GN+ + L++ +G
Sbjct: 275 LKNPVINGKQCGVTP----------------SQDSDTLYLGNICKTWTKEALKEKLKHYG 318
Query: 254 --KVVSARVVYD-RETGRSRGFGFVTMSDEAELNDAIAAL 290
V +V D + G +RGF F+ S ++ DA L
Sbjct: 319 VTNVEDITLVEDSNDKGTNRGFAFLEFSSRSDAMDAFKRL 358
>Medtr8g007390.2 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 800
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 75/160 (46%), Gaps = 19/160 (11%)
Query: 134 KLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDK 193
++FVG L DA L ++F++VG V ++ N +T +++GF F+ + VE A++AV +
Sbjct: 216 EVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAE 275
Query: 194 LNGYDFGGRLLTVNKAAPRGSRPERAPRSFDAQPAFRVYVGNLPWDFDNSQLEQVFSEHG 253
L G+ V +Q + +Y+GN+ + L++ +G
Sbjct: 276 LKNPVINGKQCGVTP----------------SQDSDTLYLGNICKTWTKEALKEKLKHYG 319
Query: 254 --KVVSARVVYD-RETGRSRGFGFVTMSDEAELNDAIAAL 290
V +V D + G +RGF F+ S ++ DA L
Sbjct: 320 VTNVEDITLVEDSNDKGTNRGFAFLEFSSRSDAMDAFKRL 359
>Medtr8g007390.1 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 800
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 75/160 (46%), Gaps = 19/160 (11%)
Query: 134 KLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDK 193
++FVG L DA L ++F++VG V ++ N +T +++GF F+ + VE A++AV +
Sbjct: 216 EVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAE 275
Query: 194 LNGYDFGGRLLTVNKAAPRGSRPERAPRSFDAQPAFRVYVGNLPWDFDNSQLEQVFSEHG 253
L G+ V +Q + +Y+GN+ + L++ +G
Sbjct: 276 LKNPVINGKQCGVTP----------------SQDSDTLYLGNICKTWTKEALKEKLKHYG 319
Query: 254 --KVVSARVVYD-RETGRSRGFGFVTMSDEAELNDAIAAL 290
V +V D + G +RGF F+ S ++ DA L
Sbjct: 320 VTNVEDITLVEDSNDKGTNRGFAFLEFSSRSDAMDAFKRL 359
>Medtr7g107580.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890650-43885583 | 20130731
Length = 362
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 77/163 (47%), Gaps = 15/163 (9%)
Query: 134 KLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDK 193
KLFVG +P +L LF + VD +I ++ T SRG FV + ++A+KAV+
Sbjct: 17 KLFVGQVPKHMTEDELLTLFKEFAIVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNA 76
Query: 194 LNGYDFGGRLLTVNKAAPRGSRPERAPRSFDAQ---PAFRVYVGNLPWDFDNSQLEQVFS 250
+ K P S P + + D + ++++G LP + ++ +FS
Sbjct: 77 CHN----------KKTLPGASSPLQV-KYADGELERLEHKLFIGMLPKNISEVEVSALFS 125
Query: 251 EHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQ 293
++G + +++ + S+G F+ + + A+ A++G+
Sbjct: 126 KYGTIKDLQILRGSQQ-TSKGCAFLKYETKEQALAALEAINGK 167
>Medtr6g477870.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr6:28646362-28643393 | 20130731
Length = 183
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 39/79 (49%)
Query: 230 RVYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAA 289
R+YV L + L F G++V +V D+ R RGF F+ + E E AI
Sbjct: 96 RLYVSGLSFRTTEESLRNAFKNFGQLVDVNLVMDKVANRPRGFAFLRYATEEESKKAIEG 155
Query: 290 LDGQSLGGRTIRVNVAEDR 308
+ G+ L GR I V VA+ R
Sbjct: 156 MHGKFLDGRVIFVEVAKPR 174
>Medtr5g088220.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:38253257-38251764 | 20130731
Length = 497
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 134 KLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDK 193
K+FV N+ D D KL E F Q G VD + ++ T + +GF KTVE A+KA+++
Sbjct: 262 KIFVSNVSSDIDPQKLLEFFKQFGEVDDGPLGLDKATGKPKGFALFVYKTVESAKKALEE 321
Query: 194 LNGYDFGGRLLTVNKA--APRG 213
N F G L KA P+G
Sbjct: 322 PNKV-FEGHTLYCQKAVDGPKG 342
>Medtr5g088220.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:38253257-38251764 | 20130731
Length = 497
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 134 KLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDK 193
K+FV N+ D D KL E F Q G VD + ++ T + +GF KTVE A+KA+++
Sbjct: 262 KIFVSNVSSDIDPQKLLEFFKQFGEVDDGPLGLDKATGKPKGFALFVYKTVESAKKALEE 321
Query: 194 LNGYDFGGRLLTVNKA--APRG 213
N F G L KA P+G
Sbjct: 322 PNKV-FEGHTLYCQKAVDGPKG 342
>Medtr5g088220.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:38253257-38251764 | 20130731
Length = 497
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 134 KLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDK 193
K+FV N+ D D KL E F Q G VD + ++ T + +GF KTVE A+KA+++
Sbjct: 262 KIFVSNVSSDIDPQKLLEFFKQFGEVDDGPLGLDKATGKPKGFALFVYKTVESAKKALEE 321
Query: 194 LNGYDFGGRLLTVNKA--APRG 213
N F G L KA P+G
Sbjct: 322 PNKV-FEGHTLYCQKAVDGPKG 342
>Medtr3g116130.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:54300708-54296502 | 20130731
Length = 372
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 230 RVYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAA 289
+V+VG L W+ + + + F + G ++ A V+ D+ TGRS+G+GFVT D A A
Sbjct: 30 KVFVGGLAWETQSETMRRYFEQFGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 89
Query: 290 LDGQSLGGRTIRVNVA-EDRPR 310
+ GR N+A RPR
Sbjct: 90 PS-PVIDGRRANCNLASHGRPR 110
>Medtr3g116130.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:54301450-54296178 | 20130731
Length = 281
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 230 RVYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAA 289
+V+VG L W+ + + + F + G ++ A V+ D+ TGRS+G+GFVT D A A
Sbjct: 30 KVFVGGLAWETQSETMRRYFEQFGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 89
Query: 290 LDGQSLGGRTIRVNVA-EDRPR 310
+ GR N+A RPR
Sbjct: 90 PS-PVIDGRRANCNLASHGRPR 110
>Medtr3g029580.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:9308768-9310458 | 20130731
Length = 137
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 38/64 (59%)
Query: 133 AKLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVD 192
+K+FV L + KLAE F+Q G V A+++ N+ + +GFG+VT E+A KA
Sbjct: 32 SKIFVKGLAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARKAQI 91
Query: 193 KLNG 196
+NG
Sbjct: 92 GMNG 95
>Medtr8g032590.6 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr8:12497703-12493893 | 20130731
Length = 294
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 77/178 (43%), Gaps = 23/178 (12%)
Query: 135 LFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDKL 194
+F GNL +DA + LF + G +D D GF F+ M+ DAE A+ +L
Sbjct: 4 IFCGNLDFDARQSDVERLFRKYGKID--------RVDLKSGFAFIYMEDERDAEYAIRRL 55
Query: 195 NGYDFG--GRLLTVN-KAAPRGSRP---ERAPRSFDAQPAFRVYVGNL-PWDFDNSQLEQ 247
+ +FG GR + V A R +R + S + +P+ +++ N P LE+
Sbjct: 56 DQTEFGRKGRRIRVEWTKAERDNRRSGGDSKKSSTNTKPSKTLFIINFDPVHTRTRDLER 115
Query: 248 VFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQSLGGRTIRVNVA 305
F +GK+ + R+ R F F+ + E A+ A + R I V A
Sbjct: 116 HFDPYGKISNLRI--------RRNFAFIQFETQEEATKALEATNLSKFMDRVITVEYA 165
>Medtr8g032590.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr8:12497703-12493893 | 20130731
Length = 294
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 77/178 (43%), Gaps = 23/178 (12%)
Query: 135 LFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDKL 194
+F GNL +DA + LF + G +D D GF F+ M+ DAE A+ +L
Sbjct: 4 IFCGNLDFDARQSDVERLFRKYGKID--------RVDLKSGFAFIYMEDERDAEYAIRRL 55
Query: 195 NGYDFG--GRLLTVN-KAAPRGSRP---ERAPRSFDAQPAFRVYVGNL-PWDFDNSQLEQ 247
+ +FG GR + V A R +R + S + +P+ +++ N P LE+
Sbjct: 56 DQTEFGRKGRRIRVEWTKAERDNRRSGGDSKKSSTNTKPSKTLFIINFDPVHTRTRDLER 115
Query: 248 VFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQSLGGRTIRVNVA 305
F +GK+ + R+ R F F+ + E A+ A + R I V A
Sbjct: 116 HFDPYGKISNLRI--------RRNFAFIQFETQEEATKALEATNLSKFMDRVITVEYA 165
>Medtr5g064120.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:26612934-26618708 | 20130731
Length = 283
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 230 RVYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAA 289
+V+VG L W+ ++ F + G ++ A ++ D+ TG+S+G+GFVT D A A
Sbjct: 17 KVFVGGLAWETPTDEMRTYFEQFGDILEAVIITDKNTGKSKGYGFVTFRDPESARRACAD 76
Query: 290 LDGQSLGGRTIRVNVA 305
+ + GR N+A
Sbjct: 77 PN-PVIDGRRANCNIA 91
>Medtr7g117495.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:48649576-48651271 | 20130731
Length = 253
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Query: 219 APRSFDAQPAFRVYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMS 278
+P F +V+VG L W+ L + F ++G ++ A ++ D+ TGRS+G+GFVT
Sbjct: 8 SPSQFGDTTLTKVFVGGLAWETPKDTLREHFEKYGDILEAVIISDKVTGRSKGYGFVTFK 67
Query: 279 DEAELNDAIAALDGQSLGGRTIRVNVAEDRPRR 311
D A + GR N+A RR
Sbjct: 68 DADSAKKACEEPT-VIINGRRANCNIASLGARR 99
>Medtr4g035310.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:12141158-12149871 | 20130731
Length = 267
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Query: 230 RVYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSD-EAELN---D 285
+V+VG L W+ +++ F + G+++ A V+ D+ TGRS+G+GFVT + +A + D
Sbjct: 17 KVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPDAAMRACVD 76
Query: 286 AIAALDGQSLGGRTIRVNVAEDRP 309
A +DG+ + V +P
Sbjct: 77 AAPIIDGRRANCNLASLGVQRSKP 100
>Medtr7g117495.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:48649613-48651189 | 20130731
Length = 256
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Query: 219 APRSFDAQPAFRVYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMS 278
+P F +V+VG L W+ L + F ++G ++ A ++ D+ TGRS+G+GFVT
Sbjct: 8 SPSQFGDTTLTKVFVGGLAWETPKDTLREHFEKYGDILEAVIISDKVTGRSKGYGFVTFK 67
Query: 279 DEAELNDAIAALDGQSLGGRTIRVNVAEDRPRR 311
D A + GR N+A RR
Sbjct: 68 DADSAKKACEE-PTVIINGRRANCNIASLGARR 99
>Medtr4g035310.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:12141158-12149871 | 20130731
Length = 272
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Query: 230 RVYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSD-EAELN---D 285
+V+VG L W+ +++ F + G+++ A V+ D+ TGRS+G+GFVT + +A + D
Sbjct: 17 KVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPDAAMRACVD 76
Query: 286 AIAALDGQSLGGRTIRVNVAEDRP 309
A +DG+ + V +P
Sbjct: 77 AAPIIDGRRANCNLASLGVQRSKP 100
>Medtr5g071540.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:30368066-30365046 | 20130731
Length = 149
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 4/79 (5%)
Query: 228 AFRVYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFV--TMSDEAELND 285
A ++ V NLP+ + L++ FS GK+ ++V D T RS+G F+ T D+A L
Sbjct: 38 ASKILVKNLPYFTGENALQKKFSNFGKIAEVQMVKDVSTERSKGLAFIQYTCQDDAML-- 95
Query: 286 AIAALDGQSLGGRTIRVNV 304
A+ +D QS GRTI V +
Sbjct: 96 ALETMDQQSFYGRTISVEL 114
>Medtr3g462330.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:24877263-24880115 | 20130731
Length = 340
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 43/75 (57%)
Query: 135 LFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDKL 194
L+V L +L + F+ G V ++ + T +SRGFGFVTM T+E+A++ V L
Sbjct: 47 LYVTGLSPRITKRELEKHFSAKGKVVDVHLVVDPWTRESRGFGFVTMDTLEEADRCVKYL 106
Query: 195 NGYDFGGRLLTVNKA 209
N GR++TV KA
Sbjct: 107 NRSVLEGRVITVEKA 121
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 39/80 (48%)
Query: 226 QPAFRVYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELND 285
P +YV L +LE+ FS GKVV +V D T SRGFGFVTM E +
Sbjct: 42 NPGNNLYVTGLSPRITKRELEKHFSAKGKVVDVHLVVDPWTRESRGFGFVTMDTLEEADR 101
Query: 286 AIAALDGQSLGGRTIRVNVA 305
+ L+ L GR I V A
Sbjct: 102 CVKYLNRSVLEGRVITVEKA 121
>Medtr2g026180.4 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9464335-9461370 | 20130731
Length = 411
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 134 KLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDK 193
K+FVG L F+Q GT+ V+Y+ T + RGFGF+T + E EK + K
Sbjct: 37 KIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHK 96
Query: 194 LNGYDFGGRLLTVNKAAPRGSRP 216
++ G+++ V +A P+ P
Sbjct: 97 TF-HELNGKMVEVKRAVPKDLSP 118
>Medtr7g096260.1 | multiple RNA-binding domain protein | HC |
chr7:38601352-38612085 | 20130731
Length = 709
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 41/74 (55%)
Query: 133 AKLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVD 192
+LFV NLPY +L E F+Q G+V ++ + T +S+G F+ E A +A++
Sbjct: 178 CRLFVLNLPYSTTEEELEEHFSQFGSVSQVHLLVHEVTKRSKGIAFIHFSVPEFAARALE 237
Query: 193 KLNGYDFGGRLLTV 206
+ N F GRLL V
Sbjct: 238 ESNNSIFQGRLLRV 251
>Medtr7g096260.2 | multiple RNA-binding domain protein | HC |
chr7:38600263-38612243 | 20130731
Length = 723
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 41/74 (55%)
Query: 133 AKLFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVD 192
+LFV NLPY +L E F+Q G+V ++ + T +S+G F+ E A +A++
Sbjct: 192 CRLFVLNLPYSTTEEELEEHFSQFGSVSQVHLLVHEVTKRSKGIAFIHFSVPEFAARALE 251
Query: 193 KLNGYDFGGRLLTV 206
+ N F GRLL V
Sbjct: 252 ESNNSIFQGRLLRV 265
>Medtr5g017130.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
LC | chr5:6226873-6227520 | 20130731
Length = 176
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 39/74 (52%)
Query: 138 GNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDKLNGY 197
GNLP + H L +LF G V A++ + T S F FV T E A+ A+++LNG
Sbjct: 100 GNLPPETRNHDLLQLFQPFGHVIGADIAIAQHTGLSGRFAFVNFATKEAAQSAIERLNGI 159
Query: 198 DFGGRLLTVNKAAP 211
D+ +L V + P
Sbjct: 160 DYHNFILRVEWSTP 173
>Medtr8g024520.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:9035953-9039164 | 20130731
Length = 282
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 5/78 (6%)
Query: 230 RVYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAA 289
+++VG L W+ + F + G+++ A V+ D+ TGRS+G+GFVT D AI A
Sbjct: 26 KLFVGGLAWETQRETMRMYFEQFGEILEAVVITDKYTGRSKGYGFVTFKDPEA---AIRA 82
Query: 290 LDGQS--LGGRTIRVNVA 305
S + GR N+A
Sbjct: 83 CQNPSPVIDGRRANCNIA 100
>Medtr8g024520.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:9035953-9039164 | 20130731
Length = 280
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 5/78 (6%)
Query: 230 RVYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAA 289
+++VG L W+ + F + G+++ A V+ D+ TGRS+G+GFVT D AI A
Sbjct: 26 KLFVGGLAWETQRETMRMYFEQFGEILEAVVITDKYTGRSKGYGFVTFKDPEA---AIRA 82
Query: 290 LDGQS--LGGRTIRVNVA 305
S + GR N+A
Sbjct: 83 CQNPSPVIDGRRANCNIA 100
>Medtr7g108810.1 | pre-mRNA-splicing factor SF2-like protein | HC |
chr7:44331530-44321717 | 20130731
Length = 401
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 75/169 (44%), Gaps = 20/169 (11%)
Query: 135 LFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDKL 194
++VGNLP D ++ +LF + G + ++ + + G+ FV + V+DAE A+
Sbjct: 110 VYVGNLPGDIREREVEDLFMKYGHITHIDL---KVPPRPPGYAFVEFEDVQDAEDAIRGR 166
Query: 195 NGYDFGGRLLTVNKA-APRGSRPERAPRSFDAQPA----------FRVYVGNLPWDFDNS 243
+GYDF G L V A RG+ R S + +RV V LP
Sbjct: 167 DGYDFDGHRLRVEAAHGGRGNSSSRDRYSSHSNGRGGRGVSRRSEYRVIVNGLPSSASWQ 226
Query: 244 QLEQVFSEHGKVVSARVVYDRETGRSRG-FGFVTMSDEAELNDAIAALD 291
L+ + G V ++V +D RG G V ++ ++ AI LD
Sbjct: 227 DLKDHMRKAGDVCFSQVFHD-----GRGTTGIVDYTNYDDMKYAIKKLD 270
>Medtr5g044970.1 | peptidyl-prolyl cis-trans isomerase E-like
protein | HC | chr5:19719748-19722666 | 20130731
Length = 170
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 2/95 (2%)
Query: 135 LFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDKL 194
L+VG L + + L F G + + ++ T + R FGFVT EDA A+D +
Sbjct: 12 LYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEREDASAAMDNM 71
Query: 195 NGYDFGGRLLTVNKAAPRGSRPERAPRSFDAQPAF 229
+G + GR+LTVN A P + + + + AQP +
Sbjct: 72 DGAELYGRVLTVNYALP--EKIKGGEQGWAAQPIW 104
>Medtr8g058530.1 | pre-mRNA-splicing factor SF2-like protein | HC |
chr8:20148291-20144393 | 20130731
Length = 303
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 75/169 (44%), Gaps = 20/169 (11%)
Query: 135 LFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDKL 194
++VGNLP D ++ +LF + G + ++ + + G+ FV + V+DAE A+
Sbjct: 9 VYVGNLPGDIREREVEDLFMKYGHITHIDL---KVPPRPPGYAFVEFEDVQDAEDAIRGR 65
Query: 195 NGYDFGGRLLTVNKA-APRGSRPERAPRSFDAQPA----------FRVYVGNLPWDFDNS 243
+GYDF G L V A RG+ R S + +RV V LP
Sbjct: 66 DGYDFDGHRLRVEAAHGGRGNSSSRDRYSSHSNGRGGRGVSRRSEYRVIVNGLPSSASWQ 125
Query: 244 QLEQVFSEHGKVVSARVVYDRETGRSRG-FGFVTMSDEAELNDAIAALD 291
L+ + G V ++V +D RG G V ++ ++ AI LD
Sbjct: 126 DLKDHMRKAGDVCFSQVFHD-----GRGTTGIVDYTNYDDMKYAIKKLD 169
>Medtr4g094235.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:37499515-37504601 | 20130731
Length = 280
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 40/72 (55%)
Query: 135 LFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDKL 194
L V N+ + L LF++ G V + +R T +SRGF FV K ++A KAVD+L
Sbjct: 18 LLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEASKAVDRL 77
Query: 195 NGYDFGGRLLTV 206
+G GR +TV
Sbjct: 78 DGRMVDGREITV 89
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%)
Query: 224 DAQPAFRVYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAEL 283
D + + V N+ + L +F ++GKVV + DR TG SRGF FV E
Sbjct: 11 DISDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEA 70
Query: 284 NDAIAALDGQSLGGRTIRVNVAE 306
+ A+ LDG+ + GR I V A+
Sbjct: 71 SKAVDRLDGRMVDGREITVQFAK 93
>Medtr4g094235.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:37499504-37504601 | 20130731
Length = 280
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 40/72 (55%)
Query: 135 LFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDKL 194
L V N+ + L LF++ G V + +R T +SRGF FV K ++A KAVD+L
Sbjct: 18 LLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEASKAVDRL 77
Query: 195 NGYDFGGRLLTV 206
+G GR +TV
Sbjct: 78 DGRMVDGREITV 89
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%)
Query: 224 DAQPAFRVYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAEL 283
D + + V N+ + L +F ++GKVV + DR TG SRGF FV E
Sbjct: 11 DISDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEA 70
Query: 284 NDAIAALDGQSLGGRTIRVNVAE 306
+ A+ LDG+ + GR I V A+
Sbjct: 71 SKAVDRLDGRMVDGREITVQFAK 93
>Medtr4g094235.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:37499531-37504526 | 20130731
Length = 281
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 40/72 (55%)
Query: 135 LFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDKL 194
L V N+ + L LF++ G V + +R T +SRGF FV K ++A KAVD+L
Sbjct: 18 LLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEASKAVDRL 77
Query: 195 NGYDFGGRLLTV 206
+G GR +TV
Sbjct: 78 DGRMVDGREITV 89
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%)
Query: 224 DAQPAFRVYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAEL 283
D + + V N+ + L +F ++GKVV + DR TG SRGF FV E
Sbjct: 11 DISDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEA 70
Query: 284 NDAIAALDGQSLGGRTIRVNVAE 306
+ A+ LDG+ + GR I V A+
Sbjct: 71 SKAVDRLDGRMVDGREITVQFAK 93
>Medtr4g094235.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:37499531-37504601 | 20130731
Length = 281
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 40/72 (55%)
Query: 135 LFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDKL 194
L V N+ + L LF++ G V + +R T +SRGF FV K ++A KAVD+L
Sbjct: 18 LLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEASKAVDRL 77
Query: 195 NGYDFGGRLLTV 206
+G GR +TV
Sbjct: 78 DGRMVDGREITV 89
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%)
Query: 224 DAQPAFRVYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAEL 283
D + + V N+ + L +F ++GKVV + DR TG SRGF FV E
Sbjct: 11 DISDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEA 70
Query: 284 NDAIAALDGQSLGGRTIRVNVAE 306
+ A+ LDG+ + GR I V A+
Sbjct: 71 SKAVDRLDGRMVDGREITVQFAK 93
>Medtr4g074930.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:28567458-28562229 | 20130731
Length = 600
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 231 VYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAAL 290
++VGNL + S +E+ F + G+VV R D E GR +GFG V + AE + +
Sbjct: 343 LFVGNLSFSVQRSDIEKFFQDCGEVVDVRFSSDEE-GRFKGFGHVEFAS-AEAAQSALEM 400
Query: 291 DGQSLGGRTIRVNVAEDR 308
+GQ L R +R+++A +R
Sbjct: 401 NGQELLQRAVRLDLARER 418
>Medtr4g074930.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:28567458-28562229 | 20130731
Length = 588
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 231 VYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAAL 290
++VGNL + S +E+ F + G+VV R D E GR +GFG V + AE + +
Sbjct: 331 LFVGNLSFSVQRSDIEKFFQDCGEVVDVRFSSDEE-GRFKGFGHVEFAS-AEAAQSALEM 388
Query: 291 DGQSLGGRTIRVNVAEDR 308
+GQ L R +R+++A +R
Sbjct: 389 NGQELLQRAVRLDLARER 406
>Medtr1g054675.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:23814162-23811233 | 20130731
Length = 220
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 36/75 (48%)
Query: 233 VGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDG 292
V NL D L F + G V + D TG RGFGFV D A+ DA +DG
Sbjct: 47 VRNLAKDCRPEDLHDPFGQFGPVKDVYLPRDYYTGEPRGFGFVQFVDPADAADAKYHMDG 106
Query: 293 QSLGGRTIRVNVAED 307
Q L GR + V AE+
Sbjct: 107 QVLLGRELTVVFAEE 121
>Medtr4g074930.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:28567463-28562229 | 20130731
Length = 623
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 231 VYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAAL 290
++VGNL + S +E+ F + G+VV R D E GR +GFG V + AE + +
Sbjct: 366 LFVGNLSFSVQRSDIEKFFQDCGEVVDVRFSSDEE-GRFKGFGHVEFAS-AEAAQSALEM 423
Query: 291 DGQSLGGRTIRVNVAEDR 308
+GQ L R +R+++A +R
Sbjct: 424 NGQELLQRAVRLDLARER 441
>Medtr4g074930.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:28567458-28562229 | 20130731
Length = 635
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 231 VYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAAL 290
++VGNL + S +E+ F + G+VV R D E GR +GFG V + AE + +
Sbjct: 378 LFVGNLSFSVQRSDIEKFFQDCGEVVDVRFSSDEE-GRFKGFGHVEFAS-AEAAQSALEM 435
Query: 291 DGQSLGGRTIRVNVAEDR 308
+GQ L R +R+++A +R
Sbjct: 436 NGQELLQRAVRLDLARER 453
>Medtr5g070450.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:29846071-29843364 | 20130731
Length = 267
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 40/73 (54%)
Query: 135 LFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDKL 194
L V N+ + L LF++ G V + +R T +SRGF FV K ++A KAVD+L
Sbjct: 18 LLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYKYADEASKAVDRL 77
Query: 195 NGYDFGGRLLTVN 207
+G GR +TV
Sbjct: 78 DGRMVDGREITVQ 90
>Medtr5g070450.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:29846071-29843364 | 20130731
Length = 267
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 40/73 (54%)
Query: 135 LFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDKL 194
L V N+ + L LF++ G V + +R T +SRGF FV K ++A KAVD+L
Sbjct: 18 LLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYKYADEASKAVDRL 77
Query: 195 NGYDFGGRLLTVN 207
+G GR +TV
Sbjct: 78 DGRMVDGREITVQ 90
>Medtr5g070450.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:29846071-29843364 | 20130731
Length = 267
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 40/73 (54%)
Query: 135 LFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDKL 194
L V N+ + L LF++ G V + +R T +SRGF FV K ++A KAVD+L
Sbjct: 18 LLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYKYADEASKAVDRL 77
Query: 195 NGYDFGGRLLTVN 207
+G GR +TV
Sbjct: 78 DGRMVDGREITVQ 90
>Medtr5g070450.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:29846071-29843364 | 20130731
Length = 267
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 40/73 (54%)
Query: 135 LFVGNLPYDADGHKLAELFNQVGTVDLAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDKL 194
L V N+ + L LF++ G V + +R T +SRGF FV K ++A KAVD+L
Sbjct: 18 LLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYKYADEASKAVDRL 77
Query: 195 NGYDFGGRLLTVN 207
+G GR +TV
Sbjct: 78 DGRMVDGREITVQ 90