Miyakogusa Predicted Gene

Lj0g3v0121289.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0121289.1 Non Characterized Hit- tr|E0VG30|E0VG30_PEDHC
Putative uncharacterized protein OS=Pediculus humanus
,38.71,2e-18,seg,NULL; SUBFAMILY NOT NAMED,NULL; 5-METHYLCYTOSINE G/T
MISMATCH-SPECIFIC DNA GLYCOSYLASE,NULL; coi,CUFF.7232.1
         (675 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr0037s0250.2 | base excision DNA repair protein, HhH-GPD fam...   215   1e-55
Medtr0037s0060.3 | base excision DNA repair protein, HhH-GPD fam...   214   2e-55
Medtr0037s0060.1 | base excision DNA repair protein, HhH-GPD fam...   214   2e-55
Medtr0037s0060.2 | base excision DNA repair protein, HhH-GPD fam...   214   2e-55
Medtr0037s0250.1 | base excision DNA repair protein, HhH-GPD fam...   165   2e-40
Medtr6g034730.1 | HhH-GPD base excision DNA repair family protei...    94   5e-19
Medtr6g033105.1 | hypothetical protein | LC | chr6:10427112-1042...    69   1e-11

>Medtr0037s0250.2 | base excision DNA repair protein, HhH-GPD family
           protein | HC | scaffold0037:102615-107252 | 20130731
          Length = 280

 Score =  215 bits (547), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 98/155 (63%), Positives = 117/155 (75%), Gaps = 3/155 (1%)

Query: 517 FSASEKRNEAYKKRTADNTWVPPRSHIH--LIQEDHAFDPWRVLAICMLLNLTTGRQVKE 574
           F  +++  EAYK++T DN WVPP S     L+QE H  DPWRV+ ICMLLN T G+Q K+
Sbjct: 122 FLKADRCREAYKRKTLDNNWVPPPSGFEFPLLQEHHFHDPWRVIVICMLLNRTLGKQTKQ 181

Query: 575 VISNFFKLCPDAETCTQVSEDEILEVIRSLGLH-KRAAMLQRFSREYLAENWTHVTQLHG 633
           V+ NFF+LCPDAETC QV  +EI EVI++LG   KR+  LQRFSREYL E WT+VT+LHG
Sbjct: 182 VLDNFFELCPDAETCMQVKREEIEEVIKTLGFQVKRSRSLQRFSREYLTETWTYVTELHG 241

Query: 634 VGKYGADAYAIFCTGKWDRVTPNDHKLVGYCKFLH 668
           VGKY ADAYAIFCTGKWD V P+D+KL  Y  FLH
Sbjct: 242 VGKYAADAYAIFCTGKWDEVVPDDYKLNEYWNFLH 276


>Medtr0037s0060.3 | base excision DNA repair protein, HhH-GPD family
           protein | LC | scaffold0037:33142-29197 | 20130731
          Length = 282

 Score =  214 bits (546), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 99/158 (62%), Positives = 119/158 (75%), Gaps = 6/158 (3%)

Query: 517 FSASEKRNEAYKKRTADNTWVPPRSHIHLI-----QEDHAFDPWRVLAICMLLNLTTGRQ 571
           F  +++  EAYK++T DN WVPPRS   L+     QEDH  DPWRV+ ICMLLN T G+Q
Sbjct: 119 FLKADRCREAYKRKTLDNNWVPPRSTPPLVEKPLLQEDHFHDPWRVIVICMLLNRTKGQQ 178

Query: 572 VKEVISNFFKLCPDAETCTQVSEDEILEVIRSLGLH-KRAAMLQRFSREYLAENWTHVTQ 630
            ++V++NFFKLCP+AETC QV + EI EVI++LGL  KR+  LQR SREYLA  WT+VT+
Sbjct: 179 AEKVLANFFKLCPNAETCMQVPKVEIQEVIKTLGLQVKRSESLQRLSREYLAGTWTYVTE 238

Query: 631 LHGVGKYGADAYAIFCTGKWDRVTPNDHKLVGYCKFLH 668
           LH VGKY ADAYAIFCTGKWD V P+DHKL  Y  FLH
Sbjct: 239 LHSVGKYAADAYAIFCTGKWDEVVPDDHKLNKYWNFLH 276


>Medtr0037s0060.1 | base excision DNA repair protein, HhH-GPD family
           protein | LC | scaffold0037:32923-29197 | 20130731
          Length = 282

 Score =  214 bits (546), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 99/158 (62%), Positives = 119/158 (75%), Gaps = 6/158 (3%)

Query: 517 FSASEKRNEAYKKRTADNTWVPPRSHIHLI-----QEDHAFDPWRVLAICMLLNLTTGRQ 571
           F  +++  EAYK++T DN WVPPRS   L+     QEDH  DPWRV+ ICMLLN T G+Q
Sbjct: 119 FLKADRCREAYKRKTLDNNWVPPRSTPPLVEKPLLQEDHFHDPWRVIVICMLLNRTKGQQ 178

Query: 572 VKEVISNFFKLCPDAETCTQVSEDEILEVIRSLGLH-KRAAMLQRFSREYLAENWTHVTQ 630
            ++V++NFFKLCP+AETC QV + EI EVI++LGL  KR+  LQR SREYLA  WT+VT+
Sbjct: 179 AEKVLANFFKLCPNAETCMQVPKVEIQEVIKTLGLQVKRSESLQRLSREYLAGTWTYVTE 238

Query: 631 LHGVGKYGADAYAIFCTGKWDRVTPNDHKLVGYCKFLH 668
           LH VGKY ADAYAIFCTGKWD V P+DHKL  Y  FLH
Sbjct: 239 LHSVGKYAADAYAIFCTGKWDEVVPDDHKLNKYWNFLH 276


>Medtr0037s0060.2 | base excision DNA repair protein, HhH-GPD family
           protein | LC | scaffold0037:32923-29197 | 20130731
          Length = 282

 Score =  214 bits (546), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 99/158 (62%), Positives = 119/158 (75%), Gaps = 6/158 (3%)

Query: 517 FSASEKRNEAYKKRTADNTWVPPRSHIHLI-----QEDHAFDPWRVLAICMLLNLTTGRQ 571
           F  +++  EAYK++T DN WVPPRS   L+     QEDH  DPWRV+ ICMLLN T G+Q
Sbjct: 119 FLKADRCREAYKRKTLDNNWVPPRSTPPLVEKPLLQEDHFHDPWRVIVICMLLNRTKGQQ 178

Query: 572 VKEVISNFFKLCPDAETCTQVSEDEILEVIRSLGLH-KRAAMLQRFSREYLAENWTHVTQ 630
            ++V++NFFKLCP+AETC QV + EI EVI++LGL  KR+  LQR SREYLA  WT+VT+
Sbjct: 179 AEKVLANFFKLCPNAETCMQVPKVEIQEVIKTLGLQVKRSESLQRLSREYLAGTWTYVTE 238

Query: 631 LHGVGKYGADAYAIFCTGKWDRVTPNDHKLVGYCKFLH 668
           LH VGKY ADAYAIFCTGKWD V P+DHKL  Y  FLH
Sbjct: 239 LHSVGKYAADAYAIFCTGKWDEVVPDDHKLNKYWNFLH 276


>Medtr0037s0250.1 | base excision DNA repair protein, HhH-GPD family
           protein | HC | scaffold0037:102540-105043 | 20130731
          Length = 252

 Score =  165 bits (417), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 76/124 (61%), Positives = 93/124 (75%), Gaps = 3/124 (2%)

Query: 517 FSASEKRNEAYKKRTADNTWVPPRSHIH--LIQEDHAFDPWRVLAICMLLNLTTGRQVKE 574
           F  +++  EAYK++T DN WVPP S     L+QE H  DPWRV+ ICMLLN T G+Q K+
Sbjct: 125 FLKADRCREAYKRKTLDNNWVPPPSGFEFPLLQEHHFHDPWRVIVICMLLNRTLGKQTKQ 184

Query: 575 VISNFFKLCPDAETCTQVSEDEILEVIRSLGLH-KRAAMLQRFSREYLAENWTHVTQLHG 633
           V+ NFF+LCPDAETC QV  +EI EVI++LG   KR+  LQRFSREYL E WT+VT+LHG
Sbjct: 185 VLDNFFELCPDAETCMQVKREEIEEVIKTLGFQVKRSRSLQRFSREYLTETWTYVTELHG 244

Query: 634 VGKY 637
           VGKY
Sbjct: 245 VGKY 248


>Medtr6g034730.1 | HhH-GPD base excision DNA repair family protein |
           LC | chr6:14200273-14200662 | 20130731
          Length = 96

 Score = 94.0 bits (232), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 44/65 (67%), Positives = 52/65 (80%), Gaps = 1/65 (1%)

Query: 572 VKEVISNFFKLCPDAETCTQVSEDEILEVIRSLGLH-KRAAMLQRFSREYLAENWTHVTQ 630
           VK+V+ NFFKLCPD ETC QV+ +EI EVIR+LGL  KR+  LQ  SREYL E WT+VT+
Sbjct: 3   VKQVLDNFFKLCPDVETCMQVTMEEIEEVIRTLGLQVKRSGSLQHLSREYLTETWTYVTE 62

Query: 631 LHGVG 635
           LHGVG
Sbjct: 63  LHGVG 67


>Medtr6g033105.1 | hypothetical protein | LC |
           chr6:10427112-10425913 | 20130731
          Length = 191

 Score = 69.3 bits (168), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 32/61 (52%), Positives = 38/61 (62%), Gaps = 5/61 (8%)

Query: 517 FSASEKRNEAYKKRTADNTWVPPRSHIHLI-----QEDHAFDPWRVLAICMLLNLTTGRQ 571
           F  + +  E YK++T DN WVPPRS   L+     QEDH  DPWRV+ ICMLLN T   Q
Sbjct: 117 FLKANRCREVYKRKTPDNNWVPPRSTPPLVEKPLLQEDHFHDPWRVIVICMLLNRTKCEQ 176

Query: 572 V 572
           V
Sbjct: 177 V 177