Miyakogusa Predicted Gene

Lj0g3v0120319.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0120319.1 tr|D7LTK1|D7LTK1_ARALL Clathrin adaptor complex
small chain family protein OS=Arabidopsis lyrata
sub,73.68,7e-19,ADAPTOR-RELATED PROTEIN COMPLEX 3,NULL; CLATHRIN COAT
ASSEMBLY PROTEIN,Adaptor protein complex, sigm,CUFF.7142.1
         (58 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g077600.1 | AP-1 complex subunit sigma-like protein | HC |...   114   2e-26
Medtr8g077600.2 | AP-1 complex subunit sigma-like protein | HC |...   112   9e-26

>Medtr8g077600.1 | AP-1 complex subunit sigma-like protein | HC |
          chr8:33011642-33006705 | 20130731
          Length = 166

 Score =  114 bits (285), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 51/58 (87%), Positives = 57/58 (98%)

Query: 1  MIRAVLVLNTQGKPRLSKFYEYQPVEKQQQLIRNVFAVLCSRPEHVSNFVDAESFFGP 58
          MI AVLV+NTQGKPRL+KFYE++PVEKQQ++IRNVFAVLCSRPEHVSNFVDAESFFGP
Sbjct: 1  MISAVLVMNTQGKPRLAKFYEFRPVEKQQEIIRNVFAVLCSRPEHVSNFVDAESFFGP 58


>Medtr8g077600.2 | AP-1 complex subunit sigma-like protein | HC |
          chr8:33011600-33009792 | 20130731
          Length = 116

 Score =  112 bits (279), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 51/58 (87%), Positives = 57/58 (98%)

Query: 1  MIRAVLVLNTQGKPRLSKFYEYQPVEKQQQLIRNVFAVLCSRPEHVSNFVDAESFFGP 58
          MI AVLV+NTQGKPRL+KFYE++PVEKQQ++IRNVFAVLCSRPEHVSNFVDAESFFGP
Sbjct: 1  MISAVLVMNTQGKPRLAKFYEFRPVEKQQEIIRNVFAVLCSRPEHVSNFVDAESFFGP 58