Miyakogusa Predicted Gene

Lj0g3v0120299.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0120299.1 tr|B9GMB6|B9GMB6_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_750797 PE=4
SV=1,56,7e-16,SUBFAMILY NOT NAMED,NULL; ANDROGEN INDUCED INHIBITOR OF
PROLIFERATION (AS3) / PDS5-RELATED,NULL,CUFF.7141.1
         (180 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g006875.2 | sister chromatid cohesion PDS5-like protein | ...   272   1e-73
Medtr4g006875.1 | sister chromatid cohesion PDS5-like protein | ...   272   1e-73
Medtr1g014270.1 | lamin-B receptor of tudor domain protein | HC ...   210   7e-55
Medtr3g106100.1 | nucleic acid-binding protein, putative | HC | ...   205   2e-53
Medtr1g014300.1 | nucleic acid-binding protein, putative | HC | ...   183   8e-47
Medtr4g134080.1 | sister chromatid cohesion PDS5-like protein | ...   152   1e-37
Medtr4g134080.3 | sister chromatid cohesion PDS5-like protein | ...   152   1e-37
Medtr4g134080.2 | sister chromatid cohesion PDS5-like protein | ...   152   1e-37
Medtr2g027090.1 | sister chromatid cohesion PDS5-like protein | ...   150   4e-37
Medtr1g037280.1 | sister chromatid cohesion PDS5-like protein | ...   124   3e-29
Medtr1g037280.3 | sister chromatid cohesion PDS5-like protein | ...   124   3e-29
Medtr1g037280.2 | sister chromatid cohesion PDS5-like protein | ...   124   4e-29
Medtr4g030130.1 | sister chromatid cohesion PDS5-like protein, p...   105   2e-23
Medtr4g030120.1 | nucleic acid-binding protein, putative | LC | ...    66   2e-11

>Medtr4g006875.2 | sister chromatid cohesion PDS5-like protein | HC
           | chr4:842674-848397 | 20130731
          Length = 799

 Score =  272 bits (696), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 130/180 (72%), Positives = 151/180 (83%)

Query: 1   MKALISAELLRHPDEDVNISVTSCLAEITRITAPDSPYDDEQMKEVFKLKVSAFEKLCHV 60
           MK LIS ELL+H DEDV ISVT+CL EI RITAP+ PYDDE MKE FKL V+AFE L HV
Sbjct: 62  MKTLISDELLKHTDEDVKISVTACLTEIARITAPNDPYDDENMKEFFKLTVAAFENLSHV 121

Query: 61  SGRGYEKALAILENVWKVRSSLVMLDLECDDLVIEMFHHFFGVVRSSHPSNVIHSMESIM 120
           SGR YEKAL ILE + K++  L+MLDLECDDLVIEMF  F  ++RS+HPS+VI SME +M
Sbjct: 122 SGRRYEKALTILEKISKIKIFLIMLDLECDDLVIEMFQQFLRIIRSNHPSSVIESMEIVM 181

Query: 121 TLVINESDEISPDLLKPLLDSARKENQTISPISWTLAEKVITSCAVKLTPFLMKAVESSG 180
           T +++ES++IS DLL+PLLDS RKENQTISPISWTL EKVIT+CAVKL P+LMKAVESSG
Sbjct: 182 TGILDESEDISSDLLRPLLDSVRKENQTISPISWTLGEKVITNCAVKLKPYLMKAVESSG 241


>Medtr4g006875.1 | sister chromatid cohesion PDS5-like protein | HC
           | chr4:842728-848441 | 20130731
          Length = 761

 Score =  272 bits (696), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 130/180 (72%), Positives = 151/180 (83%)

Query: 1   MKALISAELLRHPDEDVNISVTSCLAEITRITAPDSPYDDEQMKEVFKLKVSAFEKLCHV 60
           MK LIS ELL+H DEDV ISVT+CL EI RITAP+ PYDDE MKE FKL V+AFE L HV
Sbjct: 24  MKTLISDELLKHTDEDVKISVTACLTEIARITAPNDPYDDENMKEFFKLTVAAFENLSHV 83

Query: 61  SGRGYEKALAILENVWKVRSSLVMLDLECDDLVIEMFHHFFGVVRSSHPSNVIHSMESIM 120
           SGR YEKAL ILE + K++  L+MLDLECDDLVIEMF  F  ++RS+HPS+VI SME +M
Sbjct: 84  SGRRYEKALTILEKISKIKIFLIMLDLECDDLVIEMFQQFLRIIRSNHPSSVIESMEIVM 143

Query: 121 TLVINESDEISPDLLKPLLDSARKENQTISPISWTLAEKVITSCAVKLTPFLMKAVESSG 180
           T +++ES++IS DLL+PLLDS RKENQTISPISWTL EKVIT+CAVKL P+LMKAVESSG
Sbjct: 144 TGILDESEDISSDLLRPLLDSVRKENQTISPISWTLGEKVITNCAVKLKPYLMKAVESSG 203


>Medtr1g014270.1 | lamin-B receptor of tudor domain protein | HC |
           chr1:3029508-3039200 | 20130731
          Length = 930

 Score =  210 bits (534), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 101/180 (56%), Positives = 132/180 (73%)

Query: 1   MKALISAELLRHPDEDVNISVTSCLAEITRITAPDSPYDDEQMKEVFKLKVSAFEKLCHV 60
           +KALI+ +L++H D DV +++ SC +EITRITAPD+PYDD QMKEVF+L VS+FE L   
Sbjct: 59  LKALIADKLIKHSDADVKVALASCFSEITRITAPDAPYDDGQMKEVFRLIVSSFENLHDK 118

Query: 61  SGRGYEKALAILENVWKVRSSLVMLDLECDDLVIEMFHHFFGVVRSSHPSNVIHSMESIM 120
           S R Y K   ILE V KVRS +VMLDLECD L++EMF HF   +R  HP NV  SME+IM
Sbjct: 119 SSRWYSKRTLILETVAKVRSCVVMLDLECDALILEMFQHFLKTIREHHPDNVFSSMETIM 178

Query: 121 TLVINESDEISPDLLKPLLDSARKENQTISPISWTLAEKVITSCAVKLTPFLMKAVESSG 180
            L + ES+EIS DLL P+LDS +K+N+ + PI+  L E+V+ SCA +L P L++AV + G
Sbjct: 179 ILCLEESEEISDDLLSPILDSVKKDNEEVLPIARKLGERVLESCATRLKPCLLQAVNTLG 238


>Medtr3g106100.1 | nucleic acid-binding protein, putative | HC |
           chr3:48971316-48964581 | 20130731
          Length = 802

 Score =  205 bits (521), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 97/180 (53%), Positives = 131/180 (72%)

Query: 1   MKALISAELLRHPDEDVNISVTSCLAEITRITAPDSPYDDEQMKEVFKLKVSAFEKLCHV 60
           MK L+  +LLRHPD DV  ++ +C++EITRI+APD+PYDD+QMKE+F+L VS+FE L   
Sbjct: 59  MKELVGNKLLRHPDPDVKAALAACISEITRISAPDTPYDDDQMKEIFQLIVSSFENLHDK 118

Query: 61  SGRGYEKALAILENVWKVRSSLVMLDLECDDLVIEMFHHFFGVVRSSHPSNVIHSMESIM 120
             R YE    +LE V KVRS +VMLDL+CD L++EMF HF   +R  HP +V  SME+IM
Sbjct: 119 LSRSYENRRIVLETVAKVRSCVVMLDLDCDALILEMFQHFLKTIRDHHPKDVFSSMETIM 178

Query: 121 TLVINESDEISPDLLKPLLDSARKENQTISPISWTLAEKVITSCAVKLTPFLMKAVESSG 180
           TLV+ ES++IS DLL PLL+S +K N+ + PI+  L E+V+ SC  KL P L++AV + G
Sbjct: 179 TLVLEESEDISFDLLSPLLESIKKNNEEVFPIARKLGERVLESCGSKLKPCLVQAVRTLG 238


>Medtr1g014300.1 | nucleic acid-binding protein, putative | HC |
           chr1:3015402-3017934 | 20130731
          Length = 246

 Score =  183 bits (465), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 90/168 (53%), Positives = 119/168 (70%)

Query: 1   MKALISAELLRHPDEDVNISVTSCLAEITRITAPDSPYDDEQMKEVFKLKVSAFEKLCHV 60
           +KALIS +L++H D  V +++ SCL+E+TRITAPD PY+D QMKEV +L VS+FE L  +
Sbjct: 71  LKALISDKLIKHSDVGVKVALASCLSELTRITAPDGPYNDHQMKEVLRLIVSSFENLHDM 130

Query: 61  SGRGYEKALAILENVWKVRSSLVMLDLECDDLVIEMFHHFFGVVRSSHPSNVIHSMESIM 120
           S R YE  ++ILE V KVR  +VMLDLECD L++EMF  F   +R  HP  V  SME+IM
Sbjct: 131 SSRWYETRISILETVAKVRLCVVMLDLECDALILEMFRLFLKTIREYHPEIVFSSMEAIM 190

Query: 121 TLVINESDEISPDLLKPLLDSARKENQTISPISWTLAEKVITSCAVKL 168
             VI ESD+IS  LL P+LD  +K+N+ +SPI+  L + V+  CA KL
Sbjct: 191 ARVIEESDDISLGLLYPILDCVKKDNKVVSPIARKLGKSVLQKCATKL 238


>Medtr4g134080.1 | sister chromatid cohesion PDS5-like protein | HC
           | chr4:56119240-56132121 | 20130731
          Length = 1660

 Score =  152 bits (385), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 76/166 (45%), Positives = 110/166 (66%)

Query: 3   ALISAELLRHPDEDVNISVTSCLAEITRITAPDSPYDDEQMKEVFKLKVSAFEKLCHVSG 62
           A++  ELL+H D+DV + V +C+ EITRITAP++PY+DE +K+ F+L VS F  L   SG
Sbjct: 67  AIVKPELLKHQDKDVKLLVATCICEITRITAPEAPYNDEILKDTFRLIVSTFSGLSDTSG 126

Query: 63  RGYEKALAILENVWKVRSSLVMLDLECDDLVIEMFHHFFGVVRSSHPSNVIHSMESIMTL 122
             + + + ILE + K RS +VMLDLECDDLV EMF  F  V R  HP +V+ SM++IM +
Sbjct: 127 PSFGRRVVILETLAKYRSCVVMLDLECDDLVNEMFSTFVAVARDDHPESVLSSMQTIMVV 186

Query: 123 VINESDEISPDLLKPLLDSARKENQTISPISWTLAEKVITSCAVKL 168
           ++ ES+++  DLL  LL +  + N+ ++  +  LA  VI  C  KL
Sbjct: 187 LLEESEDVHGDLLSILLSTLGRGNKGVTMAAKRLAMNVIQHCVGKL 232


>Medtr4g134080.3 | sister chromatid cohesion PDS5-like protein | HC
           | chr4:56119254-56132113 | 20130731
          Length = 1667

 Score =  152 bits (385), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 76/166 (45%), Positives = 110/166 (66%)

Query: 3   ALISAELLRHPDEDVNISVTSCLAEITRITAPDSPYDDEQMKEVFKLKVSAFEKLCHVSG 62
           A++  ELL+H D+DV + V +C+ EITRITAP++PY+DE +K+ F+L VS F  L   SG
Sbjct: 67  AIVKPELLKHQDKDVKLLVATCICEITRITAPEAPYNDEILKDTFRLIVSTFSGLSDTSG 126

Query: 63  RGYEKALAILENVWKVRSSLVMLDLECDDLVIEMFHHFFGVVRSSHPSNVIHSMESIMTL 122
             + + + ILE + K RS +VMLDLECDDLV EMF  F  V R  HP +V+ SM++IM +
Sbjct: 127 PSFGRRVVILETLAKYRSCVVMLDLECDDLVNEMFSTFVAVARDDHPESVLSSMQTIMVV 186

Query: 123 VINESDEISPDLLKPLLDSARKENQTISPISWTLAEKVITSCAVKL 168
           ++ ES+++  DLL  LL +  + N+ ++  +  LA  VI  C  KL
Sbjct: 187 LLEESEDVHGDLLSILLSTLGRGNKGVTMAAKRLAMNVIQHCVGKL 232


>Medtr4g134080.2 | sister chromatid cohesion PDS5-like protein | HC
           | chr4:56119398-56132067 | 20130731
          Length = 1657

 Score =  152 bits (385), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 76/166 (45%), Positives = 110/166 (66%)

Query: 3   ALISAELLRHPDEDVNISVTSCLAEITRITAPDSPYDDEQMKEVFKLKVSAFEKLCHVSG 62
           A++  ELL+H D+DV + V +C+ EITRITAP++PY+DE +K+ F+L VS F  L   SG
Sbjct: 67  AIVKPELLKHQDKDVKLLVATCICEITRITAPEAPYNDEILKDTFRLIVSTFSGLSDTSG 126

Query: 63  RGYEKALAILENVWKVRSSLVMLDLECDDLVIEMFHHFFGVVRSSHPSNVIHSMESIMTL 122
             + + + ILE + K RS +VMLDLECDDLV EMF  F  V R  HP +V+ SM++IM +
Sbjct: 127 PSFGRRVVILETLAKYRSCVVMLDLECDDLVNEMFSTFVAVARDDHPESVLSSMQTIMVV 186

Query: 123 VINESDEISPDLLKPLLDSARKENQTISPISWTLAEKVITSCAVKL 168
           ++ ES+++  DLL  LL +  + N+ ++  +  LA  VI  C  KL
Sbjct: 187 LLEESEDVHGDLLSILLSTLGRGNKGVTMAAKRLAMNVIQHCVGKL 232


>Medtr2g027090.1 | sister chromatid cohesion PDS5-like protein | HC
           | chr2:9853017-9871224 | 20130731
          Length = 1683

 Score =  150 bits (380), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 74/170 (43%), Positives = 113/170 (66%)

Query: 1   MKALISAELLRHPDEDVNISVTSCLAEITRITAPDSPYDDEQMKEVFKLKVSAFEKLCHV 60
           + A++ +ELL+H D DV + V +C+ EITRITAP++PY D+ +K++F+L VS F  L  +
Sbjct: 56  LNAIVKSELLKHQDRDVKLLVATCVCEITRITAPEAPYSDDVLKDIFQLIVSTFSGLSDI 115

Query: 61  SGRGYEKALAILENVWKVRSSLVMLDLECDDLVIEMFHHFFGVVRSSHPSNVIHSMESIM 120
           S   +   +A+L+ + K RS +VMLDLECDDLV E+F+ FF VVR  HP +V+ SM+SIM
Sbjct: 116 SSPSFGMEVAMLDTLAKYRSCVVMLDLECDDLVNEIFNTFFAVVRDDHPESVLSSMQSIM 175

Query: 121 TLVINESDEISPDLLKPLLDSARKENQTISPISWTLAEKVITSCAVKLTP 170
            +++ ES+++  DLL  LL    +E + ++  +  L+  VI  C   L P
Sbjct: 176 AVLLEESEDVREDLLSILLSMLGREKRDVTAAARKLSMNVIQQCIGTLEP 225


>Medtr1g037280.1 | sister chromatid cohesion PDS5-like protein | HC
           | chr1:13708601-13728159 | 20130731
          Length = 1415

 Score =  124 bits (312), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 61/163 (37%), Positives = 104/163 (63%)

Query: 3   ALISAELLRHPDEDVNISVTSCLAEITRITAPDSPYDDEQMKEVFKLKVSAFEKLCHVSG 62
           A++   LL+H D+DV + V  C+ E+ RI AP+ P++D+ +++VFKL +  F  L     
Sbjct: 69  AVVCGGLLQHGDKDVKLLVALCVTELFRIKAPEPPFEDKHLRDVFKLIIGLFADLADTKN 128

Query: 63  RGYEKALAILENVWKVRSSLVMLDLECDDLVIEMFHHFFGVVRSSHPSNVIHSMESIMTL 122
             + K + +L+ V +++  L+ML+++C DLV+EMF+ FF  VR  H  ++I++M SIM  
Sbjct: 129 SLFSKRVKVLDTVAQLKCCLLMLEIDCIDLVLEMFNVFFSAVRDHHDKSLINAMSSIMIT 188

Query: 123 VINESDEISPDLLKPLLDSARKENQTISPISWTLAEKVITSCA 165
           ++NES+E S  LL+ +L +  K  +  +  S+ LA  VI++CA
Sbjct: 189 ILNESEEASQKLLEVILRNLIKRKKDPTCASYQLAASVISTCA 231


>Medtr1g037280.3 | sister chromatid cohesion PDS5-like protein | HC
           | chr1:13708489-13733416 | 20130731
          Length = 1435

 Score =  124 bits (312), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 61/163 (37%), Positives = 104/163 (63%)

Query: 3   ALISAELLRHPDEDVNISVTSCLAEITRITAPDSPYDDEQMKEVFKLKVSAFEKLCHVSG 62
           A++   LL+H D+DV + V  C+ E+ RI AP+ P++D+ +++VFKL +  F  L     
Sbjct: 69  AVVCGGLLQHGDKDVKLLVALCVTELFRIKAPEPPFEDKHLRDVFKLIIGLFADLADTKN 128

Query: 63  RGYEKALAILENVWKVRSSLVMLDLECDDLVIEMFHHFFGVVRSSHPSNVIHSMESIMTL 122
             + K + +L+ V +++  L+ML+++C DLV+EMF+ FF  VR  H  ++I++M SIM  
Sbjct: 129 SLFSKRVKVLDTVAQLKCCLLMLEIDCIDLVLEMFNVFFSAVRDHHDKSLINAMSSIMIT 188

Query: 123 VINESDEISPDLLKPLLDSARKENQTISPISWTLAEKVITSCA 165
           ++NES+E S  LL+ +L +  K  +  +  S+ LA  VI++CA
Sbjct: 189 ILNESEEASQKLLEVILRNLIKRKKDPTCASYQLAASVISTCA 231


>Medtr1g037280.2 | sister chromatid cohesion PDS5-like protein | HC
           | chr1:13708601-13728159 | 20130731
          Length = 1414

 Score =  124 bits (312), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 61/163 (37%), Positives = 104/163 (63%)

Query: 3   ALISAELLRHPDEDVNISVTSCLAEITRITAPDSPYDDEQMKEVFKLKVSAFEKLCHVSG 62
           A++   LL+H D+DV + V  C+ E+ RI AP+ P++D+ +++VFKL +  F  L     
Sbjct: 69  AVVCGGLLQHGDKDVKLLVALCVTELFRIKAPEPPFEDKHLRDVFKLIIGLFADLADTKN 128

Query: 63  RGYEKALAILENVWKVRSSLVMLDLECDDLVIEMFHHFFGVVRSSHPSNVIHSMESIMTL 122
             + K + +L+ V +++  L+ML+++C DLV+EMF+ FF  VR  H  ++I++M SIM  
Sbjct: 129 SLFSKRVKVLDTVAQLKCCLLMLEIDCIDLVLEMFNVFFSAVRDHHDKSLINAMSSIMIT 188

Query: 123 VINESDEISPDLLKPLLDSARKENQTISPISWTLAEKVITSCA 165
           ++NES+E S  LL+ +L +  K  +  +  S+ LA  VI++CA
Sbjct: 189 ILNESEEASQKLLEVILRNLIKRKKDPTCASYQLAASVISTCA 231


>Medtr4g030130.1 | sister chromatid cohesion PDS5-like protein,
           putative | HC | chr4:10453009-10454253 | 20130731
          Length = 152

 Score =  105 bits (262), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 49/69 (71%), Positives = 55/69 (79%)

Query: 1   MKALISAELLRHPDEDVNISVTSCLAEITRITAPDSPYDDEQMKEVFKLKVSAFEKLCHV 60
           MK LIS ELLRH D+DV ISVT+CL EI RITAP++PY+DE MKE  KL   AFEKL  V
Sbjct: 68  MKTLISDELLRHTDDDVKISVTACLTEIARITAPNAPYNDEHMKEYLKLMADAFEKLSGV 127

Query: 61  SGRGYEKAL 69
           SGRGYEKA+
Sbjct: 128 SGRGYEKAI 136


>Medtr4g030120.1 | nucleic acid-binding protein, putative | LC |
           chr4:10455323-10456722 | 20130731
          Length = 313

 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/65 (53%), Positives = 47/65 (72%), Gaps = 11/65 (16%)

Query: 116 MESIMTLVINESDEISPDLLKPLLDSARKENQTISPISWTLAEKVITSCAVKLTPFLMKA 175
           ME +MT +++ES+++S +L++PLLDS RKENQ           KVIT+CAVKL   LM+A
Sbjct: 1   MEIVMTGILDESEDVSSNLVRPLLDSVRKENQ-----------KVITNCAVKLKTHLMQA 49

Query: 176 VESSG 180
           VESSG
Sbjct: 50  VESSG 54