Miyakogusa Predicted Gene
- Lj0g3v0120039.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0120039.2 Non Characterized Hit- tr|K4AY91|K4AY91_SOLLC
Uncharacterized protein OS=Solanum lycopersicum GN=Sol,29.6,9e-18,
,CUFF.7146.2
(237 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr3g028140.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 285 2e-77
Medtr3g028140.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 283 7e-77
Medtr8g037000.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 164 5e-41
Medtr8g037000.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 142 2e-34
>Medtr3g028140.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:8902513-8908790 | 20130731
Length = 582
Score = 285 bits (730), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 158/250 (63%), Positives = 185/250 (74%), Gaps = 20/250 (8%)
Query: 1 MASVLKAVAEAAEDVMKSKSSGSVFNRLGSGRNSSVDKSQLEDNFQHQEQNQSLYLQRSG 60
MA V+KAVAEAAEDV KSKSSGSVF+RLG G +SS D SQL+ +QHQEQNQS+YLQR+
Sbjct: 273 MARVIKAVAEAAEDV-KSKSSGSVFDRLGCGMDSSADNSQLD--YQHQEQNQSMYLQRTD 329
Query: 61 YNGQRPANTTIMEHETGAHSDSASDNEGFHDVDVMGHRVTEISQFSSSGGN--------- 111
YNGQ ANTT++E ET SDS SDNEG HDV+V+G VT S+ SSS GN
Sbjct: 330 YNGQYAANTTMVERETVFLSDSNSDNEGCHDVNVIGRGVTGTSEISSSVGNKGSDSLMVQ 389
Query: 112 ------ADDSLRLKRNREQEKPVAA-RASHKIVNISVNVSTWKPPLYQEPSHFAQLAGHK 164
ADDSLRLK+++EQE+P AA S KIVNISVNV+TWKP YQEP +L GHK
Sbjct: 390 YSVAKKADDSLRLKQSQEQEQPTAACNPSRKIVNISVNVNTWKPDQYQEPREVVELDGHK 449
Query: 165 GSDHETGAHRSGMQLMEDNTNTSKVSNGNANPSPDVQKESSKSQLCISGSSLAGRPLEDV 224
SD+E G RS MQL+++N N K+SNGN N +PDVQKESSK+ C GSS+AGRP EDV
Sbjct: 450 ISDNEIGDSRSNMQLVKENANALKISNGNVNLAPDVQKESSKAH-CTPGSSVAGRPTEDV 508
Query: 225 ESRTIFVSNV 234
+SRTIFVSNV
Sbjct: 509 DSRTIFVSNV 518
>Medtr3g028140.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:8902502-8910404 | 20130731
Length = 685
Score = 283 bits (725), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 158/250 (63%), Positives = 185/250 (74%), Gaps = 20/250 (8%)
Query: 1 MASVLKAVAEAAEDVMKSKSSGSVFNRLGSGRNSSVDKSQLEDNFQHQEQNQSLYLQRSG 60
MA V+KAVAEAAEDV KSKSSGSVF+RLG G +SS D SQL+ +QHQEQNQS+YLQR+
Sbjct: 273 MARVIKAVAEAAEDV-KSKSSGSVFDRLGCGMDSSADNSQLD--YQHQEQNQSMYLQRTD 329
Query: 61 YNGQRPANTTIMEHETGAHSDSASDNEGFHDVDVMGHRVTEISQFSSSGGN--------- 111
YNGQ ANTT++E ET SDS SDNEG HDV+V+G VT S+ SSS GN
Sbjct: 330 YNGQYAANTTMVERETVFLSDSNSDNEGCHDVNVIGRGVTGTSEISSSVGNKGSDSLMVQ 389
Query: 112 ------ADDSLRLKRNREQEKPVAA-RASHKIVNISVNVSTWKPPLYQEPSHFAQLAGHK 164
ADDSLRLK+++EQE+P AA S KIVNISVNV+TWKP YQEP +L GHK
Sbjct: 390 YSVAKKADDSLRLKQSQEQEQPTAACNPSRKIVNISVNVNTWKPDQYQEPREVVELDGHK 449
Query: 165 GSDHETGAHRSGMQLMEDNTNTSKVSNGNANPSPDVQKESSKSQLCISGSSLAGRPLEDV 224
SD+E G RS MQL+++N N K+SNGN N +PDVQKESSK+ C GSS+AGRP EDV
Sbjct: 450 ISDNEIGDSRSNMQLVKENANALKISNGNVNLAPDVQKESSKAH-CTPGSSVAGRPTEDV 508
Query: 225 ESRTIFVSNV 234
+SRTIFVSNV
Sbjct: 509 DSRTIFVSNV 518
>Medtr8g037000.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr8:13487363-13494759 | 20130731
Length = 815
Score = 164 bits (416), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 101/246 (41%), Positives = 136/246 (55%), Gaps = 52/246 (21%)
Query: 40 QLEDNFQHQEQNQSLYLQRSGYNGQRPANTTIMEHETGAH-------------------- 79
Q EDN Q+QE++ LY +++ Y Q PAN T ++HETG
Sbjct: 401 QFEDN-QYQEESSFLYHEKTDYGDQYPANMTTLDHETGFQFEDNQYEEESPFLYHEKNDF 459
Query: 80 ------------SDSASDNEGFHDVDVMGHRVTEISQFSSSGGNA--------------D 113
SDS+SDNEGF DV+ MG+RV +SQFSSSGG D
Sbjct: 460 GDQYAANMTGVPSDSSSDNEGFDDVNFMGNRVGRVSQFSSSGGKRGEYSLMGNYSAAKND 519
Query: 114 DSLRLKRNREQEKPVAARASHKIVNISVNVSTWKPPL---YQEPSHFAQLAGHKGSDHET 170
DS+ LK+NR Q++ AA S KIVNISVNV+ W PP+ Y +P A L+GHK + T
Sbjct: 520 DSILLKKNRNQDQSAAAPNSSKIVNISVNVNAWNPPVPKQYAKPRKVADLSGHKTLNSGT 579
Query: 171 GAHRSGMQLMEDNTNTSKVSNGNANPSPDVQKESSKSQLCI--SGSSLAGRPLEDVESRT 228
A +SG+ ++ +N T K+ +G A P+ D+ K + K+Q +GSS A PL+D +SRT
Sbjct: 580 RAPKSGLSMVNENAKTVKIDSGKAKPTLDLLKVTQKAQPSTPGTGSSAASCPLDDADSRT 639
Query: 229 IFVSNV 234
IF SNV
Sbjct: 640 IFASNV 645
>Medtr8g037000.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr8:13487353-13490775 | 20130731
Length = 626
Score = 142 bits (359), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 87/224 (38%), Positives = 120/224 (53%), Gaps = 50/224 (22%)
Query: 40 QLEDNFQHQEQNQSLYLQRSGYNGQRPANTTIMEHETGAH-------------------- 79
Q EDN Q+QE++ LY +++ Y Q PAN T ++HETG
Sbjct: 401 QFEDN-QYQEESSFLYHEKTDYGDQYPANMTTLDHETGFQFEDNQYEEESPFLYHEKNDF 459
Query: 80 ------------SDSASDNEGFHDVDVMGHRVTEISQFSSSGGNA--------------D 113
SDS+SDNEGF DV+ MG+RV +SQFSSSGG D
Sbjct: 460 GDQYAANMTGVPSDSSSDNEGFDDVNFMGNRVGRVSQFSSSGGKRGEYSLMGNYSAAKND 519
Query: 114 DSLRLKRNREQEKPVAARASHKIVNISVNVSTWKPPL---YQEPSHFAQLAGHKGSDHET 170
DS+ LK+NR Q++ AA S KIVNISVNV+ W PP+ Y +P A L+GHK + T
Sbjct: 520 DSILLKKNRNQDQSAAAPNSSKIVNISVNVNAWNPPVPKQYAKPRKVADLSGHKTLNSGT 579
Query: 171 GAHRSGMQLMEDNTNTSKVSNGNANPSPDVQKESSKSQLCISGS 214
A +SG+ ++ +N T K+ +G A P+ D+ K + K+Q G+
Sbjct: 580 RAPKSGLSMVNENAKTVKIDSGKAKPTLDLLKVTQKAQPSTPGT 623