Miyakogusa Predicted Gene

Lj0g3v0117519.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0117519.1 tr|B9IIP7|B9IIP7_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_777371 PE=4
SV=1,41.03,5e-16,ZF_CCHC,Zinc finger, CCHC-type; zf-CCHC,Zinc finger,
CCHC-type; zinc finger,Zinc finger, CCHC-type; ,CUFF.6923.1
         (570 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g058110.1 | RNA recognition motif, a.k.a. RRM, RBD protein...   447   e-125

>Medtr1g058110.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr1:25574711-25576708 | 20130731
          Length = 665

 Score =  447 bits (1149), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 291/568 (51%), Positives = 331/568 (58%), Gaps = 35/568 (6%)

Query: 6   RGKSVEVPGEEGGYHEDDFKDYAGEEKDYGGSFPDEGGGAVPNLEDNGGWNEPTHDPSVD 65
           RG+SVE    EG Y  D FK   GEEK+    FPDEGG  VPN    G   EPTH  + D
Sbjct: 126 RGESVE----EGEYRRDGFKYCDGEEKNRRRDFPDEGGHVVPNQGRIGRGAEPTHGKATD 181

Query: 66  NEKGNSLGFDRYEPHHGYDPKHGKGDYHVGCSGGSPAVNSQENMGRAQIGEETSNRPNDS 125
              GN+L FDRY P  GYD K  K DY    S GS   NSQEN+GRAQIGEET NRPN S
Sbjct: 182 CGNGNTLEFDRYRPSCGYDRKDDKEDY----SSGSLLANSQENVGRAQIGEETLNRPNSS 237

Query: 126 KFRQTCYRCGESGHKMRNCPKEHSSGRKYDWSDVGQNSRINQDHRVEDDNKIGSGSLVKL 185
           K + T YR GE+GHKM+NC KEHS  RKY+  D     +I++  RVEDD + G GS V  
Sbjct: 238 KLKHTGYRRGEAGHKMQNCRKEHSLRRKYNRLDDEHADKIDKKRRVEDDIESGWGSWVIP 297

Query: 186 QSSGDTLSMRRQRGT-RMSGSRHNRALSRKESPPPVINETDXXXXXXXXXXXXXXNESES 244
           QS+GD L M  QR   R+SGSR + A  R ES P V  +T+              NE+ES
Sbjct: 298 QSNGDALLMSHQRDKWRVSGSRSDCAPLRNESSP-VAKDTEEYEGKKQSR-----NETES 351

Query: 245 PTRSW-AKISKWSDSSPVPADYXXXXXXXXXXXXXXLARPTSKYXXXXXXXXXXXXXXXX 303
           P RS   KIS+ S SS + +DY              L R T KY                
Sbjct: 352 PKRSREKKISRRSVSSSLLSDYSAFRSLTHSQSSKSLPRST-KYSRSRSVSSRAHSSSSK 410

Query: 304 XXXXXXXXX---XXXXXXXXXXXXXXXXXXXKPLSSIPTKFQLNAKSSSINGTACENVDH 360
                                          + L S P K QLN+KSSS NG A + VDH
Sbjct: 411 SVSSSKSQNCRGKKLHSMRSSSPTSLSVSLNQSLLSSPNKIQLNSKSSSTNGAALKPVDH 470

Query: 361 LVSQGQQIGSTMGLEYPQIQSKDTCIAVNGKAAVDTTVVDAMEKELCMPEDNNENCTLVN 420
           LV++GQ IGSTM LE   +QSKD+ IAVNG+A V TT VDA  K+  + EDNNEN     
Sbjct: 471 LVARGQGIGSTMELE--NLQSKDSDIAVNGQAVVSTTAVDATLKDQHVQEDNNEN----- 523

Query: 421 PSDGVANLSQPV-AEKLSPLIMKETEGFPHSGTSMVDDIPAETQKLTSETHVNPHSGRST 479
                  L++PV AEKLSP  +K   GF H  T M DDIP E QK T ETH+ P SG ST
Sbjct: 524 -------LTKPVIAEKLSPRRVKWEVGFQHPRTLMADDIPTEVQKPTLETHITPRSGCST 576

Query: 480 IISTEEMCMVLNNYGLELPNDYEKSSTTEAFFGAARLWPWHIVYYRRLKKGPISTENYAR 539
           IISTEEMCMVLN  GLELP  +E   TT+ FFGAARLWPW+I+YYRRLKKGPIS ENYAR
Sbjct: 577 IISTEEMCMVLNKSGLELPEGHEIKLTTDDFFGAARLWPWYIIYYRRLKKGPISIENYAR 636

Query: 540 RVAQNQEFGIADKYIRSSSGWEEFSLEN 567
           RVAQNQEFGI DKYIRSSSGW EFS EN
Sbjct: 637 RVAQNQEFGIVDKYIRSSSGWGEFSPEN 664