Miyakogusa Predicted Gene

Lj0g3v0117039.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0117039.1 Non Characterized Hit- tr|I3S3D1|I3S3D1_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,98.17,0,SIGMA
FACTOR SIGB REGULATION PROTEIN RSBQ,NULL; ALPHA/BETA HYDROLASE
FOLD-CONTAINING PROTEIN,NULL; a,CUFF.6892.1
         (219 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g095310.1 | sigma factor sigb regulation rsbq-like protein...   404   e-113
Medtr5g016150.1 | sigma factor sigb regulation rsbq-like protein...   374   e-104
Medtr1g018320.1 | sigma factor sigb regulation rsbq-like protein...   250   6e-67
Medtr6g086560.1 | sigma factor sigb regulation protein rsbq prot...   165   3e-41
Medtr3g045440.1 | sigma factor sigb regulation rsbq-like protein...   162   2e-40

>Medtr4g095310.1 | sigma factor sigb regulation rsbq-like protein |
           HC | chr4:39713387-39710926 | 20130731
          Length = 270

 Score =  404 bits (1037), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 190/219 (86%), Positives = 209/219 (95%)

Query: 1   MGAGTTNPDYFDFDRYSTLQGYAYDLLAILEELQVRSCIFVGHSVSGMIGTIASISRPDL 60
           MGAGTTNPDYFDF+RYSTL+GYAYDLLAILEEL+V SCIFVGHSVS MIGT+ASISRPDL
Sbjct: 52  MGAGTTNPDYFDFERYSTLEGYAYDLLAILEELRVDSCIFVGHSVSAMIGTVASISRPDL 111

Query: 61  FSKLIMVSASPRYLNDVDYFGGFEQEDLDQLLDAMAANYKAWCSGWAPMAIGGDMESVAV 120
           F+K+I++SASPRYLND DYFGGFEQEDLDQL DAMA+NYK+WCSG+APMA+GGDMESVAV
Sbjct: 112 FNKIILISASPRYLNDRDYFGGFEQEDLDQLFDAMASNYKSWCSGFAPMAVGGDMESVAV 171

Query: 121 QEFSRTLFNMRPDIALSVLQTIFQSDMRQVLSLVTVPCHIIQSKKDLAVPVVVAEDLHQH 180
           QEFSRTLFNMRPDIALSVLQTIF+SDMRQ+L +VTVPCHIIQS KDLAVPVVVAE LHQH
Sbjct: 172 QEFSRTLFNMRPDIALSVLQTIFKSDMRQILCMVTVPCHIIQSMKDLAVPVVVAEYLHQH 231

Query: 181 GGGESIVEVMSTEGHLPQLSSPDIVVPVLLRHICHDIAA 219
            G ESIVEVMSTEGHLPQLSSPD+V+PV+L+HI HDIAA
Sbjct: 232 VGSESIVEVMSTEGHLPQLSSPDVVIPVILKHIRHDIAA 270


>Medtr5g016150.1 | sigma factor sigb regulation rsbq-like protein |
           HC | chr5:5736714-5740149 | 20130731
          Length = 305

 Score =  374 bits (961), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 175/217 (80%), Positives = 203/217 (93%)

Query: 1   MGAGTTNPDYFDFDRYSTLQGYAYDLLAILEELQVRSCIFVGHSVSGMIGTIASISRPDL 60
           MGAGTTNP+YFD +R+S+L+GYAYDLLAILEELQ+ SCIFVGHSVS MIG IASI+RPDL
Sbjct: 52  MGAGTTNPEYFDSERHSSLEGYAYDLLAILEELQIDSCIFVGHSVSAMIGAIASITRPDL 111

Query: 61  FSKLIMVSASPRYLNDVDYFGGFEQEDLDQLLDAMAANYKAWCSGWAPMAIGGDMESVAV 120
           F KLIMVS+SPRYLNDV+YFGGFEQEDL+QL +AMA NYKAWC G+AP+A+GGDM+SVAV
Sbjct: 112 FLKLIMVSSSPRYLNDVNYFGGFEQEDLNQLFNAMAENYKAWCYGFAPLAVGGDMDSVAV 171

Query: 121 QEFSRTLFNMRPDIALSVLQTIFQSDMRQVLSLVTVPCHIIQSKKDLAVPVVVAEDLHQH 180
           QEFSRTLFNMRPDIAL V +TIFQSDMRQ+L+LVTVPCHIIQ++KD+AVPV+V+E LHQH
Sbjct: 172 QEFSRTLFNMRPDIALIVSRTIFQSDMRQILNLVTVPCHIIQAEKDMAVPVMVSEYLHQH 231

Query: 181 GGGESIVEVMSTEGHLPQLSSPDIVVPVLLRHICHDI 217
            GG+SIVEVM+T+GHLPQLSSPDIV+PVLLRHI  +I
Sbjct: 232 LGGQSIVEVMTTDGHLPQLSSPDIVIPVLLRHIQLNI 268


>Medtr1g018320.1 | sigma factor sigb regulation rsbq-like protein |
           HC | chr1:5202292-5203901 | 20130731
          Length = 268

 Score =  250 bits (639), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 116/201 (57%), Positives = 156/201 (77%), Gaps = 2/201 (0%)

Query: 3   AGTTNPDYFDFDRYSTLQGYAYDLLAILEELQVRSCIFVGHSVSGMIGTIASISRPDLFS 62
           AG+ NPDYFD+ RY+TL  Y  DLL IL+ L V  C +VGHS+S MIG +ASI RP+LFS
Sbjct: 56  AGSVNPDYFDYRRYTTLDAYVDDLLNILDSLHVTRCAYVGHSISAMIGMLASIRRPELFS 115

Query: 63  KLIMVSASPRYLND-VDYFGGFEQEDLDQLLDAMAANYKAWCSGWAPMAIGGDMESVAVQ 121
           KLI++ ASPR+LND  +Y GGFEQ +++Q+  AM ANY+AW +G+AP+A+G D+ + AV+
Sbjct: 116 KLILIGASPRFLNDGENYHGGFEQGEIEQVFSAMEANYEAWVNGFAPLAVGADVPT-AVR 174

Query: 122 EFSRTLFNMRPDIALSVLQTIFQSDMRQVLSLVTVPCHIIQSKKDLAVPVVVAEDLHQHG 181
           EFSRTLFNMRPDI+L V +T+F SD+R +L LV VPC I+Q+ +D++VP  VA  + +H 
Sbjct: 175 EFSRTLFNMRPDISLFVSRTVFNSDLRGILGLVKVPCCIMQTARDMSVPATVATYMKEHL 234

Query: 182 GGESIVEVMSTEGHLPQLSSP 202
           GG+S V+ + TEGHLP LS+P
Sbjct: 235 GGKSTVQWLDTEGHLPHLSAP 255


>Medtr6g086560.1 | sigma factor sigb regulation protein rsbq
           protein, putative | HC | chr6:32152457-32148021 |
           20130731
          Length = 284

 Score =  165 bits (417), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 82/195 (42%), Positives = 125/195 (64%), Gaps = 1/195 (0%)

Query: 15  RYSTLQGYAYDLLAILEELQVRSCIFVGHSVSGMIGTIASISRPDLFSKLIMVSASPRYL 74
           +YS+L  +A DL+++L++++++   FVGHS+SGMI  +ASI RP LF +LI+V ASPRY+
Sbjct: 81  KYSSLDAFADDLISLLDQMELKVVTFVGHSMSGMISCLASIKRPQLFKRLILVGASPRYI 140

Query: 75  NDVDYFGGFEQEDLDQLLDAMAANYKAWCSGWAPMAIGGDMESVAVQEFSRTLFNMRPDI 134
           N  DY GGF   D+D LL  + +NY+ W S ++   +  + E  +V +F   L  MR ++
Sbjct: 141 NTDDYEGGFTSSDIDNLLKNIESNYENWVSYFSTNVVDPNDEP-SVIKFRECLNKMRNEV 199

Query: 135 ALSVLQTIFQSDMRQVLSLVTVPCHIIQSKKDLAVPVVVAEDLHQHGGGESIVEVMSTEG 194
            LS+ +T+F  D R +L  V  PC IIQ+  D+ VP  VA  + +   G+  +EV+ T G
Sbjct: 200 PLSLAKTVFCHDYRDILEKVETPCTIIQTSSDMVVPYSVALYMEKKIKGKVTLEVIDTFG 259

Query: 195 HLPQLSSPDIVVPVL 209
           H PQL++P  +V VL
Sbjct: 260 HFPQLTAPLQLVDVL 274


>Medtr3g045440.1 | sigma factor sigb regulation rsbq-like protein |
           HC | chr3:14783516-14781798 | 20130731
          Length = 269

 Score =  162 bits (411), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 74/204 (36%), Positives = 135/204 (66%), Gaps = 1/204 (0%)

Query: 6   TNPDYFDFDRYSTLQGYAYDLLAILEELQVRSCIFVGHSVSGMIGTIASISRPDLFSKLI 65
           T+   ++  +Y++ + YA +L+ +++EL ++   FVGHS++ MIG IASI +P+LF +++
Sbjct: 62  TDKSLYNHAKYNSYEPYADELITLMDELDLKCITFVGHSMAAMIGCIASIKKPELFKRIV 121

Query: 66  MVSASPRYLNDVDYFGGFEQEDLDQLLDAMAANYKAWCSGWAPMAIGGDMESVAVQEFSR 125
           ++ ASPRY+N  DY GGFE+ D++ L+  + + Y++W S + P+A+  + ++ +V +F +
Sbjct: 122 LLCASPRYINTDDYEGGFERSDIENLISTIESQYESWVSAYGPIAVDPN-DADSVDKFQK 180

Query: 126 TLFNMRPDIALSVLQTIFQSDMRQVLSLVTVPCHIIQSKKDLAVPVVVAEDLHQHGGGES 185
            L  M  ++A+++ +T+F SD R ++  V +PC IIQS  D+AVP+ +   L ++  G S
Sbjct: 181 CLKRMGGEVAITLAKTVFFSDYRDMVEKVVIPCTIIQSSNDVAVPISIGHYLDENIKGVS 240

Query: 186 IVEVMSTEGHLPQLSSPDIVVPVL 209
            +E +   GH PQL++   +V VL
Sbjct: 241 TLEFIDMTGHCPQLTAHLRLVEVL 264