Miyakogusa Predicted Gene

Lj0g3v0116939.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0116939.1 Non Characterized Hit- tr|K4ASQ1|K4ASQ1_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,32.26,0.000000000000006, ,CUFF.6876.1
         (203 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g055295.1 | PPR containing plant-like protein | HC | chr1:...   218   2e-57

>Medtr1g055295.1 | PPR containing plant-like protein | HC |
           chr1:24439721-24443062 | 20130731
          Length = 1046

 Score =  218 bits (556), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 122/202 (60%), Positives = 141/202 (69%), Gaps = 14/202 (6%)

Query: 10  MRAL--SKFRSLDPYLRSQSH-VFHLS----SKPSSHPHRA-HKLPNSNKLSDTTDASRA 61
           MRAL   K RS D    S SH VFHLS    S   SH H+   +L NS+      + SRA
Sbjct: 1   MRALLKIKLRSYDSSFLSHSHHVFHLSTFSNSSKLSHSHKTTDQLSNSD-----VEPSRA 55

Query: 62  LFNEITEILGADTVIPDQSPSGFLFPGETRECEGGLNEQPVCAEGVCGNAAEELVVDKGE 121
           LFNEITEILG+DTVI D SPSGFLFP E R+ + G  E+  C E VC NAAE +V+DK E
Sbjct: 56  LFNEITEILGSDTVIHDNSPSGFLFPLEIRDTQLGFKEKHDCTEPVCENAAESVVLDKDE 115

Query: 122 SFAVMEDAQLGNMGEEELSRMVGEITEIVRSENGSGSMEERLENVGYG-LKAEVFDKVLQ 180
           +F V+ED QL  +GEE++ RMVGEI EI+R ENGS SMEERLE +GY  L  EVFD+VL+
Sbjct: 116 NFTVLEDNQLVKLGEEDMCRMVGEIMEIIRGENGSVSMEERLEKMGYCELNVEVFDRVLK 175

Query: 181 RCFKMPRLALRVFNWLKLKEGF 202
           RCFKMP L LRVFNWLKLK GF
Sbjct: 176 RCFKMPHLGLRVFNWLKLKGGF 197