Miyakogusa Predicted Gene

Lj0g3v0116669.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0116669.1 Non Characterized Hit- tr|I1QCQ9|I1QCQ9_ORYGL
Uncharacterized protein (Fragment) OS=Oryza
glaberrima,55.13,0.000000000000007, ,CUFF.6854.1
         (78 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g077700.1 | RNA polymerase II transcription mediators prot...   140   2e-34
Medtr8g030800.1 | RNA polymerase II transcription mediators prot...   115   1e-26
Medtr7g077710.5 | DUF3245 family protein | HC | chr7:29316771-29...    80   3e-16
Medtr7g077710.2 | DUF3245 family protein | HC | chr7:29316653-29...    80   3e-16
Medtr7g077710.1 | DUF3245 family protein | HC | chr7:29316829-29...    80   3e-16
Medtr7g077710.3 | DUF3245 family protein | HC | chr7:29316653-29...    80   3e-16
Medtr7g077710.4 | DUF3245 family protein | HC | chr7:29316642-29...    80   3e-16

>Medtr7g077700.1 | RNA polymerase II transcription mediators
          protein | HC | chr7:29314574-29301316 | 20130731
          Length = 2257

 Score =  140 bits (354), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 66/79 (83%), Positives = 72/79 (91%), Gaps = 1/79 (1%)

Query: 1  MQRYHAGNCTSAVNNSTIGGPSTRDIGRTDPSSLPANFPISSRRQPPLYS-YKLKCDKEP 59
          MQRYHAG+CTSAVNN+TIGGPS RDIGR D SSLP NFP+SSRR PP ++ YKLKCDKEP
Sbjct: 1  MQRYHAGSCTSAVNNNTIGGPSARDIGRIDSSSLPPNFPVSSRRLPPPFTLYKLKCDKEP 60

Query: 60 LNSRLGPPDFHPQTPNCPE 78
          LNSRLGPPDF+PQTPNCPE
Sbjct: 61 LNSRLGPPDFNPQTPNCPE 79


>Medtr8g030800.1 | RNA polymerase II transcription mediators protein
           | HC | chr8:11439667-11455475 | 20130731
          Length = 2262

 Score =  115 bits (287), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 64/112 (57%), Positives = 70/112 (62%), Gaps = 35/112 (31%)

Query: 1   MQRYHAGNCTSAVNNSTIGGPSTRDIGRTDPSSLPANFPISS------------------ 42
           MQRYHAG+CTSAVNNSTIGGPS+RD GR+D SS PA+FP++S                  
Sbjct: 1   MQRYHAGSCTSAVNNSTIGGPSSRDTGRSD-SSFPAHFPVNSRSSIHKSNPDLITMGSRS 59

Query: 43  --------------RRQPPLYS--YKLKCDKEPLNSRLGPPDFHPQTPNCPE 78
                         RRQP L    YKLKCDKEPLNSRLG PDF PQTPNCPE
Sbjct: 60  KQNIKGQPKRFPIMRRQPQLNINPYKLKCDKEPLNSRLGAPDFLPQTPNCPE 111


>Medtr7g077710.5 | DUF3245 family protein | HC |
          chr7:29316771-29321236 | 20130731
          Length = 183

 Score = 80.5 bits (197), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 36/44 (81%), Positives = 40/44 (90%)

Query: 1  MQRYHAGNCTSAVNNSTIGGPSTRDIGRTDPSSLPANFPISSRR 44
          MQRYHAG+CTSAVNN+TIGGPS RDIGR D SSLP NFP+SSR+
Sbjct: 1  MQRYHAGSCTSAVNNNTIGGPSARDIGRIDSSSLPPNFPVSSRK 44


>Medtr7g077710.2 | DUF3245 family protein | HC |
          chr7:29316653-29321235 | 20130731
          Length = 183

 Score = 80.5 bits (197), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 36/44 (81%), Positives = 40/44 (90%)

Query: 1  MQRYHAGNCTSAVNNSTIGGPSTRDIGRTDPSSLPANFPISSRR 44
          MQRYHAG+CTSAVNN+TIGGPS RDIGR D SSLP NFP+SSR+
Sbjct: 1  MQRYHAGSCTSAVNNNTIGGPSARDIGRIDSSSLPPNFPVSSRK 44


>Medtr7g077710.1 | DUF3245 family protein | HC |
          chr7:29316829-29321184 | 20130731
          Length = 183

 Score = 80.5 bits (197), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 36/44 (81%), Positives = 40/44 (90%)

Query: 1  MQRYHAGNCTSAVNNSTIGGPSTRDIGRTDPSSLPANFPISSRR 44
          MQRYHAG+CTSAVNN+TIGGPS RDIGR D SSLP NFP+SSR+
Sbjct: 1  MQRYHAGSCTSAVNNNTIGGPSARDIGRIDSSSLPPNFPVSSRK 44


>Medtr7g077710.3 | DUF3245 family protein | HC |
          chr7:29316653-29321235 | 20130731
          Length = 183

 Score = 80.5 bits (197), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 36/44 (81%), Positives = 40/44 (90%)

Query: 1  MQRYHAGNCTSAVNNSTIGGPSTRDIGRTDPSSLPANFPISSRR 44
          MQRYHAG+CTSAVNN+TIGGPS RDIGR D SSLP NFP+SSR+
Sbjct: 1  MQRYHAGSCTSAVNNNTIGGPSARDIGRIDSSSLPPNFPVSSRK 44


>Medtr7g077710.4 | DUF3245 family protein | HC |
          chr7:29316642-29321236 | 20130731
          Length = 183

 Score = 80.5 bits (197), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 36/44 (81%), Positives = 40/44 (90%)

Query: 1  MQRYHAGNCTSAVNNSTIGGPSTRDIGRTDPSSLPANFPISSRR 44
          MQRYHAG+CTSAVNN+TIGGPS RDIGR D SSLP NFP+SSR+
Sbjct: 1  MQRYHAGSCTSAVNNNTIGGPSARDIGRIDSSSLPPNFPVSSRK 44