Miyakogusa Predicted Gene

Lj0g3v0116369.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0116369.1 tr|Q6YWF9|Q6YWF9_ORYSJ Nucleoporin-like protein
OS=Oryza sativa subsp. japonica GN=OSJNBb0018G11.20
,43.14,0.000000000000002,Nup160,Nucleoporin Nup120/160,CUFF.6831.1
         (165 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g063180.2 | suppressor of auxin resistance 1 protein | HC ...   233   8e-62
Medtr1g063180.1 | suppressor of auxin resistance 1 protein | HC ...   232   9e-62

>Medtr1g063180.2 | suppressor of auxin resistance 1 protein | HC |
           chr1:27819581-27840479 | 20130731
          Length = 1484

 Score =  233 bits (593), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 116/162 (71%), Positives = 132/162 (81%), Gaps = 11/162 (6%)

Query: 11  MGTGSTLVGKEVPIIGSDAVRWIDLSVPSSANIXPDA--------RASCPAIGDPTTYLI 62
           MGT   L GKEVPIIGSDAVRW DL+VPSS+    D         RASC  IGDP TYLI
Sbjct: 1   MGTQWPLAGKEVPIIGSDAVRWTDLTVPSSSIFTADGGAASITDDRASCSVIGDPPTYLI 60

Query: 63  WRIHKAHPQSLELLEVSASKEFPRLGLRFTFPEALCPFAFICKNEISGSSSRFPYLLYVL 122
           WRIHKA PQ+LELLE++ASKEFPR+GLRFTFP+AL PFAFICKNEI+G +SRFPYLLYVL
Sbjct: 61  WRIHKAQPQTLELLELTASKEFPRVGLRFTFPDALYPFAFICKNEITG-NSRFPYLLYVL 119

Query: 123 TVSGLAYLLRIRNVSAYASCSISIIPVDELLELDIRGYVSNN 164
           TVSG+AYLLRIRNVSAY SC  SI+P DEL+EL++R Y+ +N
Sbjct: 120 TVSGVAYLLRIRNVSAYGSC--SILPEDELIELNVRDYIPDN 159


>Medtr1g063180.1 | suppressor of auxin resistance 1 protein | HC |
           chr1:27819569-27840479 | 20130731
          Length = 1495

 Score =  232 bits (592), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 116/162 (71%), Positives = 132/162 (81%), Gaps = 11/162 (6%)

Query: 11  MGTGSTLVGKEVPIIGSDAVRWIDLSVPSSANIXPDA--------RASCPAIGDPTTYLI 62
           MGT   L GKEVPIIGSDAVRW DL+VPSS+    D         RASC  IGDP TYLI
Sbjct: 1   MGTQWPLAGKEVPIIGSDAVRWTDLTVPSSSIFTADGGAASITDDRASCSVIGDPPTYLI 60

Query: 63  WRIHKAHPQSLELLEVSASKEFPRLGLRFTFPEALCPFAFICKNEISGSSSRFPYLLYVL 122
           WRIHKA PQ+LELLE++ASKEFPR+GLRFTFP+AL PFAFICKNEI+G +SRFPYLLYVL
Sbjct: 61  WRIHKAQPQTLELLELTASKEFPRVGLRFTFPDALYPFAFICKNEITG-NSRFPYLLYVL 119

Query: 123 TVSGLAYLLRIRNVSAYASCSISIIPVDELLELDIRGYVSNN 164
           TVSG+AYLLRIRNVSAY SC  SI+P DEL+EL++R Y+ +N
Sbjct: 120 TVSGVAYLLRIRNVSAYGSC--SILPEDELIELNVRDYIPDN 159