Miyakogusa Predicted Gene

Lj0g3v0116299.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0116299.3 Non Characterized Hit- tr|I1JJJ1|I1JJJ1_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.42440 PE,86.7,0,MEIOTIC
RECOMBINATION PROTEIN SPO11,Spo11/DNA topoisomerase VI, subunit A; DNA
topoisomerase IV, alp,CUFF.6826.3
         (239 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g095090.1 | meiotic recombination SPO11-like protein | HC ...   425   e-119
Medtr5g095040.1 | meiotic recombination SPO11-like protein | HC ...   417   e-117
Medtr1g067040.1 | SPO11/DNA topoisomerase VI, subunit A | HC | c...   179   3e-45
Medtr5g084590.1 | SPO11/DNA topoisomerase VI, subunit A | LC | c...   115   3e-26
Medtr5g009990.1 | meiotic recombination SPO11-like protein | HC ...   103   2e-22

>Medtr5g095090.1 | meiotic recombination SPO11-like protein | HC |
           chr5:41557500-41561995 | 20130731
          Length = 379

 Score =  425 bits (1092), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 195/220 (88%), Positives = 213/220 (96%)

Query: 20  IVMGWIRFFEGKRIYDCISSPNTAHPIPVHVEEVQDIVSVAHYILVVEKESVFQRLANDQ 79
           +VMGWIRF EGK+I+DCISSP+TAHPIPV+VEE++DIVS A YILVVEKESVFQRLANDQ
Sbjct: 160 LVMGWIRFVEGKKIFDCISSPDTAHPIPVYVEEIKDIVSAARYILVVEKESVFQRLANDQ 219

Query: 80  FCNANRCIIITGRGYPDIPTRRFLRLLVDNLHLPAYCLVDCDPYGFDILTTYRFGSMQMA 139
           FC +N CI+I+GRGYPDIPTRRFLRLLV+NLH+PAYCLVDCDPYGFDILTTYRFGSMQMA
Sbjct: 220 FCKSNHCIVISGRGYPDIPTRRFLRLLVENLHIPAYCLVDCDPYGFDILTTYRFGSMQMA 279

Query: 140 YDTKHLRVPEIHWLGAFPSDSERYLVPKQCLLPLTAEDKRKIEAMLLRCYLQREVPRWRL 199
           YDTKHLRVPEIHWLGAFPSDSERY VPKQCLLPLTAEDKRKIEAMLLRCYLQREVP+WRL
Sbjct: 280 YDTKHLRVPEIHWLGAFPSDSERYFVPKQCLLPLTAEDKRKIEAMLLRCYLQREVPQWRL 339

Query: 200 ELKLMLQKGVKFELEALSVRTLAFLTESYIPSKIHGKVKL 239
           ELK+MLQKGVKFE+EALSV TL+FLTESYIPSKIHGKV++
Sbjct: 340 ELKMMLQKGVKFEIEALSVHTLSFLTESYIPSKIHGKVQI 379


>Medtr5g095040.1 | meiotic recombination SPO11-like protein | HC |
           chr5:41541794-41545159 | 20130731
          Length = 378

 Score =  417 bits (1072), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 191/220 (86%), Positives = 211/220 (95%)

Query: 20  IVMGWIRFFEGKRIYDCISSPNTAHPIPVHVEEVQDIVSVAHYILVVEKESVFQRLANDQ 79
           +VMGWIRF EGK+I+DCI+SPNTAHP PV+VEE++DIVS+AHYILVVEKESVF+ LAND 
Sbjct: 159 LVMGWIRFVEGKKIFDCINSPNTAHPTPVYVEEIKDIVSMAHYILVVEKESVFRILANDH 218

Query: 80  FCNANRCIIITGRGYPDIPTRRFLRLLVDNLHLPAYCLVDCDPYGFDILTTYRFGSMQMA 139
           FCNAN CI+I+GRGYPDIPTRRFLRLLVDNL++PAYCLVDCDPYGFDILTTYRFGSMQMA
Sbjct: 219 FCNANHCIVISGRGYPDIPTRRFLRLLVDNLYIPAYCLVDCDPYGFDILTTYRFGSMQMA 278

Query: 140 YDTKHLRVPEIHWLGAFPSDSERYLVPKQCLLPLTAEDKRKIEAMLLRCYLQREVPRWRL 199
           YDTKHLRVPEIHWLGAFPSDS+RY VPKQCLLPLT EDKRKI+AMLLRCYLQREVP WRL
Sbjct: 279 YDTKHLRVPEIHWLGAFPSDSDRYFVPKQCLLPLTVEDKRKIKAMLLRCYLQREVPEWRL 338

Query: 200 ELKLMLQKGVKFELEALSVRTLAFLTESYIPSKIHGKVKL 239
           EL++MLQKGVKFE+EALSV TL+FLTESYIPSKIHGKVK+
Sbjct: 339 ELRMMLQKGVKFEIEALSVHTLSFLTESYIPSKIHGKVKI 378


>Medtr1g067040.1 | SPO11/DNA topoisomerase VI, subunit A | HC |
           chr1:28849957-28846880 | 20130731
          Length = 443

 Score =  179 bits (453), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 88/215 (40%), Positives = 131/215 (60%), Gaps = 1/215 (0%)

Query: 20  IVMGWIRFFEGKRIYDCISSPNTAHPIPVHVEEVQDIVSVAHYILVVEKESVFQRLANDQ 79
           +V+G + F +   + DC         IP +++ V D+ S A +IL+VEK++ + RLA D+
Sbjct: 199 VVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQSDALFILLVEKDAAYMRLAEDR 258

Query: 80  FCNANRCIIITGRGYPDIPTRRFLRLLVDNLHLPAYCLVDCDPYGFDILTTYRFGSMQMA 139
           F N   CII+T +G PD+ TR FLR +   L LP   LVD DPYG  IL+ Y  GS  M+
Sbjct: 259 FYNRFPCIIVTAKGQPDVSTRLFLRKMKMELKLPVLALVDSDPYGLKILSVYGCGSKNMS 318

Query: 140 YDTKHLRVPEIHWLGAFPSDSERYLVPKQCLLPLTAEDKRKIEAMLLRCYLQREVPRWRL 199
           YD+ HL  P+I WLG  PSD ++Y +P+QC LP+T +D +  + ML   ++++  P W  
Sbjct: 319 YDSSHLTTPDIKWLGVRPSDLDKYKIPEQCRLPMTEQDIKTGKDMLEEDFVKKN-PGWVE 377

Query: 200 ELKLMLQKGVKFELEALSVRTLAFLTESYIPSKIH 234
           EL LM++   K E++ALS     +L+E Y+P K+ 
Sbjct: 378 ELTLMVKTKQKAEIQALSTFGFQYLSEVYLPLKLQ 412


>Medtr5g084590.1 | SPO11/DNA topoisomerase VI, subunit A | LC |
           chr5:36506754-36505560 | 20130731
          Length = 275

 Score =  115 bits (289), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 60/173 (34%), Positives = 99/173 (57%), Gaps = 1/173 (0%)

Query: 21  VMGWIRFFEGKRIYDCISSPNTAHPIPVHVEEVQDIVS-VAHYILVVEKESVFQRLANDQ 79
           V+G ++F  G    DC  +    HPIP+ V+ +  +    A +IL+VE  +    L +  
Sbjct: 100 VVGELQFEYGGLEIDCRKTDLLGHPIPLRVDCMTKMTKREALFILLVESVATLVSLHSAG 159

Query: 80  FCNANRCIIITGRGYPDIPTRRFLRLLVDNLHLPAYCLVDCDPYGFDILTTYRFGSMQMA 139
           F     CII+ G G PD+ +R+ +R L  +L LP   LVD D YGF ILT Y  GS +MA
Sbjct: 160 FEQRFPCIIVAGSGVPDVCSRKLVRKLSLDLKLPVLALVDGDLYGFRILTIYNKGSQKMA 219

Query: 140 YDTKHLRVPEIHWLGAFPSDSERYLVPKQCLLPLTAEDKRKIEAMLLRCYLQR 192
           YD+++L  P I+WLG  P D++ Y +P  C+  L+  + + +++++ + +++ 
Sbjct: 220 YDSENLTTPNIYWLGVRPCDADHYDIPSGCIKQLSPTELKSVKSLMAKPFMKN 272


>Medtr5g009990.1 | meiotic recombination SPO11-like protein | HC |
           chr5:2567904-2571533 | 20130731
          Length = 382

 Score =  103 bits (256), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/208 (33%), Positives = 111/208 (53%), Gaps = 12/208 (5%)

Query: 30  GKRIYDCISSPNTAHPIPVHVEEVQDIV--SVAHYILVVEKESVFQRLANDQFCNANRCI 87
           GK   DC    ++ H I   +  +  ++  + A YI++VEK ++FQRLA D+F N    I
Sbjct: 177 GKEAVDCSVCGSSGHAISGDLNLLDKLILNADARYIIIVEKHAIFQRLAEDRFFNQIPSI 236

Query: 88  IITGRGYPDIPTRRFLRLLVDNL-HLPAYCLVDCDPYGFDILTTYRFGSMQMAYDTKHLR 146
           +IT +GYPDI TR  L  +      LP   LVD +P G  IL T++FGS+ M  ++ +  
Sbjct: 237 LITAKGYPDIATRFLLHRISRAFPDLPILALVDWNPAGLAILCTFKFGSVGMGLES-YRY 295

Query: 147 VPEIHWLGAFPSDSERYLVPKQCLLPLTAEDKRKIEAMLLRCYLQREVP-RWRLELKLML 205
              + WLG    D    ++P Q  +PL  +D +  ++++      R +P  ++ E+ LM+
Sbjct: 296 ACNVKWLGLRGHDLP--MLPDQSFVPLKTKDLQIAQSLM----SSRILPENYKEEVTLMV 349

Query: 206 QKGVKFELEALSVRTLAFLTESYIPSKI 233
           + G + E+EAL      +L + YI  KI
Sbjct: 350 ESGRRAEIEALYFHGYDYLGK-YIAKKI 376