Miyakogusa Predicted Gene

Lj0g3v0116289.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0116289.2 Non Characterized Hit- tr|K4CXD2|K4CXD2_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,58.18,0.0000004,SUBFAMILY NOT NAMED,NULL; DEK PROTEIN,NULL;
seg,NULL; coiled-coil,NULL,CUFF.7134.2
         (782 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g095720.1 | DEK carboxy-terminal domain protein | HC | chr...   333   5e-91
Medtr3g058970.2 | DEK carboxy-terminal domain protein | HC | chr...   270   5e-72
Medtr3g058970.1 | DEK carboxy-terminal domain protein | HC | chr...   270   5e-72
Medtr3g058970.3 | DEK carboxy-terminal domain protein | HC | chr...   270   5e-72
Medtr3g098990.1 | DEK domain chromatin associated protein | HC |...   192   8e-49
Medtr5g096450.1 | transmembrane protein, putative | LC | chr5:42...   102   1e-21

>Medtr5g095720.1 | DEK carboxy-terminal domain protein | HC |
           chr5:41846309-41853066 | 20130731
          Length = 872

 Score =  333 bits (853), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 197/412 (47%), Positives = 222/412 (53%), Gaps = 9/412 (2%)

Query: 378 RSRKRERG---KNNGEKVTKKRKELKETEPRTPSINRPVRERKSVERLVTSMEKDASKEF 434
           RSR  E G   K  GE V KK KELKE EP TP+ NRPVRERKSVERLV S ++DASKEF
Sbjct: 415 RSRDEEVGDKEKVGGENVKKKMKELKEAEPTTPTTNRPVRERKSVERLVESYDRDASKEF 474

Query: 435 HIEKGRGTPLKDIPNVAFKITRRKIDDNFKLLHTILFGRRAKAIQVKSNILRFSGFVWHE 494
            IE+GRGTPLK+IPNVAFK++RRK+DD  K LHTILF RR KA  +K NILRFSGFVWHE
Sbjct: 475 QIEEGRGTPLKNIPNVAFKLSRRKVDDTLKFLHTILFCRRGKAAVIKKNILRFSGFVWHE 534

Query: 495 NEEKQMIKVKEKFDKCNKEKLLEFCDLFDVPIAKSTTRKEDIIAKLVDFLGAPQATTTVL 554
           NEEKQMIKVKEKFDKCNKEKLLEF DL DVP+  + TRKEDIIAKL+DFL APQ T +VL
Sbjct: 535 NEEKQMIKVKEKFDKCNKEKLLEFSDLLDVPVGNANTRKEDIIAKLIDFLVAPQVTKSVL 594

Query: 555 LAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAEERXXXXXXXXXXXX 614
           LAE                                         AEER            
Sbjct: 595 LAEQEKSIKGKKRKLIAKQGSSRSGMATSRRSAKSRKKNEDSSVAEERKGSTDTEDESEE 654

Query: 615 XXXXXXXXXXXXXGVPDKSDDEMPDQXXXXXXXXXXXXXXXXKTPRKRNXXXXXXXXXXX 674
                         VPDKS DE P +                K   +R+           
Sbjct: 655 EQKDEKKVEDNENTVPDKSKDEKPKKSESGDKNDSDNESEDEKKVSERSKTSSRRKESAA 714

Query: 675 XX-XXIITVERKPRSAPRRISKKPLATHESDD--DSEESPKVSSRXXXXXXXXXXXXXXX 731
                  T + KPRSA ++ SKKPL+TH + D  DS+ SPKV SR               
Sbjct: 715 QSKAKKATDKTKPRSAQKQTSKKPLSTHSASDHGDSDGSPKVFSR--KKKNEKQGKQKTS 772

Query: 732 XXXXXXXXXXXXXXXXGRS-KSKGKLSPSDGQIRDAICEIFKEVDFNTATFT 782
                           GR  K+K K  PSD Q+R AIC IFK+VDFNTATF 
Sbjct: 773 TLTKSSSKDKAEEKVTGRKIKNKEKSDPSDDQLRKAICVIFKKVDFNTATFA 824



 Score =  138 bits (347), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 96/185 (51%), Positives = 123/185 (66%), Gaps = 3/185 (1%)

Query: 1   MGEEESVNAVSKTDPNGDSVPEKALGDMSEKKDLEAEGGKILENNGVKDLKEDGVNEMEV 60
           MGEEE VN  SKTD    S+    L D SEKKDLE +GGKI E+N V+DLKEDG+  MEV
Sbjct: 48  MGEEEPVNTASKTDI---SMLGNHLDDSSEKKDLEPKGGKIFEDNAVQDLKEDGIKAMEV 104

Query: 61  DKKADGGEGXXXXXXXXXXXXXXXXXXXXXXXEELKQDKKVDDGEELKEAEKVDDGELLK 120
           DKKADG E                        E +K+D+KV++G+E+KE ++ D+GE LK
Sbjct: 105 DKKADGEEVLEMDKLADDGDVVTENAIKAGDGEGIKEDEKVNEGKEIKEDKQADEGEELK 164

Query: 121 EDKKVDDGEELTEDKKVGDGEELTVDKKVDDGEDLKEDKKVDGGEEIKEDEKVDGGEEIK 180
           EDKK + GEE  EDKKV  G+E+  DKKV++G D+KE+KK D GE++KED+K D   +IK
Sbjct: 165 EDKKDNGGEERKEDKKVDVGQEVKEDKKVNEGGDIKEEKKADEGEKLKEDKKDDAAVKIK 224

Query: 181 EDEKV 185
           ED+KV
Sbjct: 225 EDKKV 229


>Medtr3g058970.2 | DEK carboxy-terminal domain protein | HC |
           chr3:23548030-23558551 | 20130731
          Length = 805

 Score =  270 bits (689), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 137/184 (74%), Positives = 157/184 (85%), Gaps = 1/184 (0%)

Query: 374 KVEKRSRKRERGKNNGEKVTKKRKELKETEPRTPSINRPVRERKSVERLVTSMEKDASKE 433
           K EK S+KR RGK N EKV  K+KELK  EP+TP+ +RPVRERKSVERLV  ++KD++KE
Sbjct: 341 KGEKGSKKRARGKVNEEKVKVKKKELKLPEPKTPTSDRPVRERKSVERLVALIDKDSTKE 400

Query: 434 FHIEKGRGTPLKDIPNVAFKITRRKIDDNFKLLHTILFGRRAKAIQVKSNILRFSGFVWH 493
             I KGRGTPLKDIPNVAFK++RRK DD+ KL HTILFGRR KA+QVKSNILRFSGFVWH
Sbjct: 401 LQIAKGRGTPLKDIPNVAFKLSRRKTDDSLKLFHTILFGRRGKAVQVKSNILRFSGFVWH 460

Query: 494 ENEEKQMIKVKEKFDKCNKEKLLEFCDLFDVPIAKSTTRKEDIIAKLVDFLGAPQATTTV 553
           +NEEKQM+KVKEK D+CNKEKLLEFCD+ D+ I KSTT KEDIIAKL DFL AP ATTTV
Sbjct: 461 DNEEKQMLKVKEKLDRCNKEKLLEFCDVLDITITKSTT-KEDIIAKLTDFLVAPHATTTV 519

Query: 554 LLAE 557
           +LA+
Sbjct: 520 VLAD 523



 Score =  112 bits (280), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 93/197 (47%), Positives = 122/197 (61%), Gaps = 25/197 (12%)

Query: 1   MGEEESVNAVSKTDPNGDSVPEKALGDMSEKKDLEAEGGKILENNGVKDLKEDGVNEMEV 60
           MGEEE V  VSKTD NG SVP K+LGD+ EKKDLE +GGK+LE+NGVK++KE+ V E+E 
Sbjct: 1   MGEEEVVAEVSKTDSNGGSVPVKSLGDVVEKKDLETDGGKVLESNGVKEVKENDVKEIEE 60

Query: 61  DKKADGGEGXXXXXXXXXXXXXXXXXXXXXXXEELKQDKKVDDGEELKEAEKVDDGELLK 120
           DKK +G E                         E+K+DKK D G+E+KE +K D  E +K
Sbjct: 61  DKKDEGVE------------EVQEDKKDEDAVGEVKEDKKADGGDEVKEDKKNDGVEEVK 108

Query: 121 EDKKVDDGEELTEDKKVGDGEELTVDKKVDDGEDLKEDKKVD------------GGEEIK 168
           +DKK +  +E+ EDK  GD  E+  DKK D  E++KEDKK D            G  E+K
Sbjct: 109 DDKKDNVADEVKEDKN-GDVVEVKEDKKDDVVEEVKEDKKDDAVEEVKEEKKDEGAGEVK 167

Query: 169 EDEKVDGGEEIKEDEKV 185
           E++K DG EE+KED++V
Sbjct: 168 EEKKDDGVEEVKEDKEV 184



 Score = 55.8 bits (133), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/107 (40%), Positives = 48/107 (44%), Gaps = 5/107 (4%)

Query: 681 TVERKPRSAP-RRISKKPLATH-ESDDDSEESPKVSSRXXXXXX---XXXXXXXXXXXXX 735
           TV  K RS P +R  KK   T  +SDDD  ESPKV SR                      
Sbjct: 645 TVTNKSRSPPPKRAPKKSSNTRPKSDDDINESPKVFSRKKKSEQGGKQKISTPTPTKSSS 704

Query: 736 XXXXXXXXXXXXGRSKSKGKLSPSDGQIRDAICEIFKEVDFNTATFT 782
                          K +   SP+D Q+ DAICEI KEVDFNTATFT
Sbjct: 705 KSKEKTEKVTKGKGKKKETSSSPTDDQLHDAICEILKEVDFNTATFT 751


>Medtr3g058970.1 | DEK carboxy-terminal domain protein | HC |
           chr3:23548017-23558551 | 20130731
          Length = 805

 Score =  270 bits (689), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 137/184 (74%), Positives = 157/184 (85%), Gaps = 1/184 (0%)

Query: 374 KVEKRSRKRERGKNNGEKVTKKRKELKETEPRTPSINRPVRERKSVERLVTSMEKDASKE 433
           K EK S+KR RGK N EKV  K+KELK  EP+TP+ +RPVRERKSVERLV  ++KD++KE
Sbjct: 341 KGEKGSKKRARGKVNEEKVKVKKKELKLPEPKTPTSDRPVRERKSVERLVALIDKDSTKE 400

Query: 434 FHIEKGRGTPLKDIPNVAFKITRRKIDDNFKLLHTILFGRRAKAIQVKSNILRFSGFVWH 493
             I KGRGTPLKDIPNVAFK++RRK DD+ KL HTILFGRR KA+QVKSNILRFSGFVWH
Sbjct: 401 LQIAKGRGTPLKDIPNVAFKLSRRKTDDSLKLFHTILFGRRGKAVQVKSNILRFSGFVWH 460

Query: 494 ENEEKQMIKVKEKFDKCNKEKLLEFCDLFDVPIAKSTTRKEDIIAKLVDFLGAPQATTTV 553
           +NEEKQM+KVKEK D+CNKEKLLEFCD+ D+ I KSTT KEDIIAKL DFL AP ATTTV
Sbjct: 461 DNEEKQMLKVKEKLDRCNKEKLLEFCDVLDITITKSTT-KEDIIAKLTDFLVAPHATTTV 519

Query: 554 LLAE 557
           +LA+
Sbjct: 520 VLAD 523



 Score =  112 bits (280), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 93/197 (47%), Positives = 122/197 (61%), Gaps = 25/197 (12%)

Query: 1   MGEEESVNAVSKTDPNGDSVPEKALGDMSEKKDLEAEGGKILENNGVKDLKEDGVNEMEV 60
           MGEEE V  VSKTD NG SVP K+LGD+ EKKDLE +GGK+LE+NGVK++KE+ V E+E 
Sbjct: 1   MGEEEVVAEVSKTDSNGGSVPVKSLGDVVEKKDLETDGGKVLESNGVKEVKENDVKEIEE 60

Query: 61  DKKADGGEGXXXXXXXXXXXXXXXXXXXXXXXEELKQDKKVDDGEELKEAEKVDDGELLK 120
           DKK +G E                         E+K+DKK D G+E+KE +K D  E +K
Sbjct: 61  DKKDEGVE------------EVQEDKKDEDAVGEVKEDKKADGGDEVKEDKKNDGVEEVK 108

Query: 121 EDKKVDDGEELTEDKKVGDGEELTVDKKVDDGEDLKEDKKVD------------GGEEIK 168
           +DKK +  +E+ EDK  GD  E+  DKK D  E++KEDKK D            G  E+K
Sbjct: 109 DDKKDNVADEVKEDKN-GDVVEVKEDKKDDVVEEVKEDKKDDAVEEVKEEKKDEGAGEVK 167

Query: 169 EDEKVDGGEEIKEDEKV 185
           E++K DG EE+KED++V
Sbjct: 168 EEKKDDGVEEVKEDKEV 184



 Score = 55.8 bits (133), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/107 (40%), Positives = 48/107 (44%), Gaps = 5/107 (4%)

Query: 681 TVERKPRSAP-RRISKKPLATH-ESDDDSEESPKVSSRXXXXXX---XXXXXXXXXXXXX 735
           TV  K RS P +R  KK   T  +SDDD  ESPKV SR                      
Sbjct: 645 TVTNKSRSPPPKRAPKKSSNTRPKSDDDINESPKVFSRKKKSEQGGKQKISTPTPTKSSS 704

Query: 736 XXXXXXXXXXXXGRSKSKGKLSPSDGQIRDAICEIFKEVDFNTATFT 782
                          K +   SP+D Q+ DAICEI KEVDFNTATFT
Sbjct: 705 KSKEKTEKVTKGKGKKKETSSSPTDDQLHDAICEILKEVDFNTATFT 751


>Medtr3g058970.3 | DEK carboxy-terminal domain protein | HC |
           chr3:23548384-23558551 | 20130731
          Length = 805

 Score =  270 bits (689), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 137/184 (74%), Positives = 157/184 (85%), Gaps = 1/184 (0%)

Query: 374 KVEKRSRKRERGKNNGEKVTKKRKELKETEPRTPSINRPVRERKSVERLVTSMEKDASKE 433
           K EK S+KR RGK N EKV  K+KELK  EP+TP+ +RPVRERKSVERLV  ++KD++KE
Sbjct: 341 KGEKGSKKRARGKVNEEKVKVKKKELKLPEPKTPTSDRPVRERKSVERLVALIDKDSTKE 400

Query: 434 FHIEKGRGTPLKDIPNVAFKITRRKIDDNFKLLHTILFGRRAKAIQVKSNILRFSGFVWH 493
             I KGRGTPLKDIPNVAFK++RRK DD+ KL HTILFGRR KA+QVKSNILRFSGFVWH
Sbjct: 401 LQIAKGRGTPLKDIPNVAFKLSRRKTDDSLKLFHTILFGRRGKAVQVKSNILRFSGFVWH 460

Query: 494 ENEEKQMIKVKEKFDKCNKEKLLEFCDLFDVPIAKSTTRKEDIIAKLVDFLGAPQATTTV 553
           +NEEKQM+KVKEK D+CNKEKLLEFCD+ D+ I KSTT KEDIIAKL DFL AP ATTTV
Sbjct: 461 DNEEKQMLKVKEKLDRCNKEKLLEFCDVLDITITKSTT-KEDIIAKLTDFLVAPHATTTV 519

Query: 554 LLAE 557
           +LA+
Sbjct: 520 VLAD 523



 Score =  112 bits (280), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 93/197 (47%), Positives = 122/197 (61%), Gaps = 25/197 (12%)

Query: 1   MGEEESVNAVSKTDPNGDSVPEKALGDMSEKKDLEAEGGKILENNGVKDLKEDGVNEMEV 60
           MGEEE V  VSKTD NG SVP K+LGD+ EKKDLE +GGK+LE+NGVK++KE+ V E+E 
Sbjct: 1   MGEEEVVAEVSKTDSNGGSVPVKSLGDVVEKKDLETDGGKVLESNGVKEVKENDVKEIEE 60

Query: 61  DKKADGGEGXXXXXXXXXXXXXXXXXXXXXXXEELKQDKKVDDGEELKEAEKVDDGELLK 120
           DKK +G E                         E+K+DKK D G+E+KE +K D  E +K
Sbjct: 61  DKKDEGVE------------EVQEDKKDEDAVGEVKEDKKADGGDEVKEDKKNDGVEEVK 108

Query: 121 EDKKVDDGEELTEDKKVGDGEELTVDKKVDDGEDLKEDKKVD------------GGEEIK 168
           +DKK +  +E+ EDK  GD  E+  DKK D  E++KEDKK D            G  E+K
Sbjct: 109 DDKKDNVADEVKEDKN-GDVVEVKEDKKDDVVEEVKEDKKDDAVEEVKEEKKDEGAGEVK 167

Query: 169 EDEKVDGGEEIKEDEKV 185
           E++K DG EE+KED++V
Sbjct: 168 EEKKDDGVEEVKEDKEV 184



 Score = 55.8 bits (133), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/107 (40%), Positives = 48/107 (44%), Gaps = 5/107 (4%)

Query: 681 TVERKPRSAP-RRISKKPLATH-ESDDDSEESPKVSSRXXXXXX---XXXXXXXXXXXXX 735
           TV  K RS P +R  KK   T  +SDDD  ESPKV SR                      
Sbjct: 645 TVTNKSRSPPPKRAPKKSSNTRPKSDDDINESPKVFSRKKKSEQGGKQKISTPTPTKSSS 704

Query: 736 XXXXXXXXXXXXGRSKSKGKLSPSDGQIRDAICEIFKEVDFNTATFT 782
                          K +   SP+D Q+ DAICEI KEVDFNTATFT
Sbjct: 705 KSKEKTEKVTKGKGKKKETSSSPTDDQLHDAICEILKEVDFNTATFT 751


>Medtr3g098990.1 | DEK domain chromatin associated protein | HC |
           chr3:45365234-45359585 | 20130731
          Length = 540

 Score =  192 bits (489), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 89/159 (55%), Positives = 117/159 (73%), Gaps = 5/159 (3%)

Query: 404 PRTPSINRPVRERKSVERLVTSM-----EKDASKEFHIEKGRGTPLKDIPNVAFKITRRK 458
           P TP+ +RP RERK+VER             +SK   IEKGRGT LKDIPNVAFK+++RK
Sbjct: 91  PVTPTSDRPTRERKTVERYSEPSPSKFGRSSSSKGLIIEKGRGTQLKDIPNVAFKLSKRK 150

Query: 459 IDDNFKLLHTILFGRRAKAIQVKSNILRFSGFVWHENEEKQMIKVKEKFDKCNKEKLLEF 518
            DDN  +LH++LFG++ K   +K NI +FSG+VW ENEEKQ  +VKE+ DKC KEKL+ F
Sbjct: 151 PDDNLHMLHSLLFGKKTKVNNLKRNIGQFSGYVWAENEEKQRTRVKERIDKCVKEKLIVF 210

Query: 519 CDLFDVPIAKSTTRKEDIIAKLVDFLGAPQATTTVLLAE 557
           CD+ ++PI KS+ +KE++ AKL++FL +P ATT VLLAE
Sbjct: 211 CDVLNIPINKSSVKKEELSAKLLEFLESPHATTDVLLAE 249


>Medtr5g096450.1 | transmembrane protein, putative | LC |
           chr5:42173014-42171562 | 20130731
          Length = 217

 Score =  102 bits (254), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 67/168 (39%), Positives = 89/168 (52%), Gaps = 33/168 (19%)

Query: 384 RGKNNGEKVTKKRKELKETEPRTPSINRPVRERKSVERLVTSMEKDASKEFHIEKGRGTP 443
           +G  +  +V KK KELKETE  TP+ N P+RERKS+ RL+                    
Sbjct: 46  QGNYSCSEVKKKIKELKETESTTPTTNCPLRERKSISRLLVIF---------------MT 90

Query: 444 LKDIPNVAFKITRRKIDDNFKLLHTILFGRRAKAI---QVKSNILRFSG-FVWH-----E 494
           L    +V  K++ +KID   KLLH ILFGRR K       ++ +L ++  F +H      
Sbjct: 91  LVFYASVVLKLSGKKIDYTLKLLHKILFGRRGKGYPTSHSRTILLHYTTYFSFHVTLTWN 150

Query: 495 NE---------EKQMIKVKEKFDKCNKEKLLEFCDLFDVPIAKSTTRK 533
           NE         EKQMIKVK  FD+ NKEKLLEF D+ D+P+    +RK
Sbjct: 151 NEINWSNRCYYEKQMIKVKIFFDQRNKEKLLEFSDVLDIPVGNPNSRK 198