Miyakogusa Predicted Gene

Lj0g3v0116239.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0116239.2 Non Characterized Hit- tr|D7TDB7|D7TDB7_VITVI
Putative uncharacterized protein OS=Vitis vinifera GN=,50,1e-16,no
description,Zinc finger, RING/FYVE/PHD-type; no
description,Homeodomain-like; MYB_LIKE,Myb-like d,CUFF.6822.2
         (453 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g082160.1 | myb-like DNA-binding domain protein | HC | chr...   156   3e-38
Medtr2g005950.1 | PHD-finger protein | HC | chr2:397934-401235 |...    59   7e-09
Medtr2g005950.3 | PHD-finger protein | HC | chr2:397934-401066 |...    59   8e-09
Medtr2g005950.2 | PHD-finger protein | HC | chr2:397934-401066 |...    59   8e-09

>Medtr3g082160.1 | myb-like DNA-binding domain protein | HC |
           chr3:37085251-37081098 | 20130731
          Length = 353

 Score =  156 bits (395), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 86/160 (53%), Positives = 110/160 (68%), Gaps = 16/160 (10%)

Query: 1   MREKHI--GAR-RPSPNPSATVPSPSSIPLLSTVNQDQHTATVFDS--DGDDN----VPM 51
           MR+K +  G R R S  PS   P    IPLLST N D H ATV++S  DGDDN     P 
Sbjct: 1   MRKKSVVSGIRHRRSITPSTASP----IPLLSTTNDD-HNATVYNSNSDGDDNHHTHTPF 55

Query: 52  TPDHRPEPEPVDLFDEDICIGCDQSEGTLLVCSEKGCPIAIHASCIGSEPKFDASGSFYC 111
            PD  PE  PVD  D++ICI C++  G LLVCS+  CP+++H +CIGSEPKFD SG+F+C
Sbjct: 56  -PDSVPETVPVDSLDDNICITCNKLGGELLVCSQTDCPVSVHVTCIGSEPKFDDSGNFFC 114

Query: 112 PYCWYKRAVNDCRQLRQKAMMAKEALTSFLDSKPQLVRQD 151
           PYC YKRA+   R+LR+KA++AK+AL+SFL+ K Q V +D
Sbjct: 115 PYCAYKRALKKTRELREKAVLAKKALSSFLE-KHQTVHKD 153



 Score =  122 bits (307), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 59/88 (67%), Positives = 70/88 (79%), Gaps = 1/88 (1%)

Query: 366 EVSSTGTSRKPKQQVNRILLTGKRRRRLYWTDDEEKALKEGVLKFSLENQNIPWRKILEF 425
           EV+S+ TS   K+   + +LTGKR+R L WT +EEK LKEGVLKF+ E+QNIPWRKILEF
Sbjct: 267 EVTSSRTSSLRKRVTKQNILTGKRKR-LNWTAEEEKVLKEGVLKFATEDQNIPWRKILEF 325

Query: 426 GCGTFDKTRAPSDLKDKWKKMISKQGCK 453
           GC  FDKTR P DLKDKW+K+ SKQGCK
Sbjct: 326 GCCVFDKTRTPVDLKDKWRKITSKQGCK 353


>Medtr2g005950.1 | PHD-finger protein | HC | chr2:397934-401235 |
           20130731
          Length = 499

 Score = 59.3 bits (142), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 47/74 (63%), Gaps = 3/74 (4%)

Query: 67  EDICIGCDQSEGTLLVCSEKGCPIAIHASCIGSEPKFDASGSFYCPYCWYKRAVNDCRQL 126
           +++C  C+++ G LLVC+   CP+ +H +C+G   + +A G+F CP+C Y  A+++  + 
Sbjct: 399 QNLCSKCNEA-GQLLVCT--TCPLMLHKNCLGDSAQLEAKGNFLCPFCKYSHAISEYLEA 455

Query: 127 RQKAMMAKEALTSF 140
           ++ +  A++ L  F
Sbjct: 456 KKISSSARKELAIF 469


>Medtr2g005950.3 | PHD-finger protein | HC | chr2:397934-401066 |
           20130731
          Length = 477

 Score = 59.3 bits (142), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 47/74 (63%), Gaps = 3/74 (4%)

Query: 67  EDICIGCDQSEGTLLVCSEKGCPIAIHASCIGSEPKFDASGSFYCPYCWYKRAVNDCRQL 126
           +++C  C+++ G LLVC+   CP+ +H +C+G   + +A G+F CP+C Y  A+++  + 
Sbjct: 399 QNLCSKCNEA-GQLLVCT--TCPLMLHKNCLGDSAQLEAKGNFLCPFCKYSHAISEYLEA 455

Query: 127 RQKAMMAKEALTSF 140
           ++ +  A++ L  F
Sbjct: 456 KKISSSARKELAIF 469


>Medtr2g005950.2 | PHD-finger protein | HC | chr2:397934-401066 |
           20130731
          Length = 475

 Score = 59.3 bits (142), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 47/74 (63%), Gaps = 3/74 (4%)

Query: 67  EDICIGCDQSEGTLLVCSEKGCPIAIHASCIGSEPKFDASGSFYCPYCWYKRAVNDCRQL 126
           +++C  C+++ G LLVC+   CP+ +H +C+G   + +A G+F CP+C Y  A+++  + 
Sbjct: 399 QNLCSKCNEA-GQLLVCT--TCPLMLHKNCLGDSAQLEAKGNFLCPFCKYSHAISEYLEA 455

Query: 127 RQKAMMAKEALTSF 140
           ++ +  A++ L  F
Sbjct: 456 KKISSSARKELAIF 469