Miyakogusa Predicted Gene
- Lj0g3v0116239.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0116239.1 Non Characterized Hit- tr|D7TDB7|D7TDB7_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,50,7e-17,FYVE/PHD zinc finger,Zinc finger, FYVE/PHD-type;
coiled-coil,NULL; MYB_LIKE,Myb-like domain; PHD zin,CUFF.6822.1
(373 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr3g082160.1 | myb-like DNA-binding domain protein | HC | chr... 258 8e-69
Medtr2g005950.3 | PHD-finger protein | HC | chr2:397934-401066 |... 59 7e-09
Medtr2g005950.1 | PHD-finger protein | HC | chr2:397934-401235 |... 59 7e-09
Medtr2g005950.2 | PHD-finger protein | HC | chr2:397934-401066 |... 59 7e-09
>Medtr3g082160.1 | myb-like DNA-binding domain protein | HC |
chr3:37085251-37081098 | 20130731
Length = 353
Score = 258 bits (658), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 171/397 (43%), Positives = 221/397 (55%), Gaps = 68/397 (17%)
Query: 1 MREKHI--GAR-RPSPNPSATVPSPSSIPLLSTVNQDQHTATVFDS--DGDDN----VPM 51
MR+K + G R R S PS P IPLLST N D H ATV++S DGDDN P
Sbjct: 1 MRKKSVVSGIRHRRSITPSTASP----IPLLSTTNDD-HNATVYNSNSDGDDNHHTHTPF 55
Query: 52 TPDHRPEPEPVDLFDEDICIGCDQSEGTLLVCSEKGCPIAIHASCIGSEPKFDASGSFYC 111
PD PE PVD D++ICI C++ G LLVCS+ CP+++H +CIGSEPKFD SG+F+C
Sbjct: 56 -PDSVPETVPVDSLDDNICITCNKLGGELLVCSQTDCPVSVHVTCIGSEPKFDDSGNFFC 114
Query: 112 PYCWYKRAVNDCRQLRQKAMMAKEALTSFLDSKPQLVRQDGCEEHIAEPGIPPGQDLNRE 171
PYC YKRA+ R+LR+KA++AK+AL+SFL+ K Q V +D E+ + +NR
Sbjct: 115 PYCAYKRALKKTRELREKAVLAKKALSSFLE-KHQTVHKDKEEQPVEPEPETVQDHVNRN 173
Query: 172 EPETASXXXXXXXXXXXXXXXXHVAEPGVPPAQDLNWEEPETAPGRRETRGLEGIERCET 231
EPE EP V +EP+ + E+
Sbjct: 174 EPE--------------------ANEPEV--------DEPKVSHSEEESNN--------D 197
Query: 232 AREEEGKESSTGSFMSETNDSDYDASLXXXXXXXXXXXXXX---XSLMESNVGD------ 282
+E K S +GS +SET DSDY+ S+ +L+
Sbjct: 198 KENDEEKVSVSGSSVSETKDSDYEVSVAEKKVRASVKRKAAPVKKALLRERKNGGGGGGS 257
Query: 283 ------ENGEVSSTGTSRKPKQQVNRILLTGKRRRRLYWTDDEEKALKEGVLKFSLENQN 336
+ EV+S+ TS K+ + +LTGK R+RL WT +EEK LKEGVLKF+ E+QN
Sbjct: 258 GGGDDIDEEEVTSSRTSSLRKRVTKQNILTGK-RKRLNWTAEEEKVLKEGVLKFATEDQN 316
Query: 337 IPWRKILEFGCGTFDKTRAPSDLKDKWKKMISKQGCK 373
IPWRKILEFGC FDKTR P DLKDKW+K+ SKQGCK
Sbjct: 317 IPWRKILEFGCCVFDKTRTPVDLKDKWRKITSKQGCK 353
>Medtr2g005950.3 | PHD-finger protein | HC | chr2:397934-401066 |
20130731
Length = 477
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 67 EDICIGCDQSEGTLLVCSEKGCPIAIHASCIGSEPKFDASGSFYCPYCWYKRAVNDCRQL 126
+++C C+++ G LLVC+ CP+ +H +C+G + +A G+F CP+C Y A+++ +
Sbjct: 399 QNLCSKCNEA-GQLLVCT--TCPLMLHKNCLGDSAQLEAKGNFLCPFCKYSHAISEYLEA 455
Query: 127 RQKAMMAKEALTSF 140
++ + A++ L F
Sbjct: 456 KKISSSARKELAIF 469
>Medtr2g005950.1 | PHD-finger protein | HC | chr2:397934-401235 |
20130731
Length = 499
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 67 EDICIGCDQSEGTLLVCSEKGCPIAIHASCIGSEPKFDASGSFYCPYCWYKRAVNDCRQL 126
+++C C+++ G LLVC+ CP+ +H +C+G + +A G+F CP+C Y A+++ +
Sbjct: 399 QNLCSKCNEA-GQLLVCT--TCPLMLHKNCLGDSAQLEAKGNFLCPFCKYSHAISEYLEA 455
Query: 127 RQKAMMAKEALTSF 140
++ + A++ L F
Sbjct: 456 KKISSSARKELAIF 469
>Medtr2g005950.2 | PHD-finger protein | HC | chr2:397934-401066 |
20130731
Length = 475
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 67 EDICIGCDQSEGTLLVCSEKGCPIAIHASCIGSEPKFDASGSFYCPYCWYKRAVNDCRQL 126
+++C C+++ G LLVC+ CP+ +H +C+G + +A G+F CP+C Y A+++ +
Sbjct: 399 QNLCSKCNEA-GQLLVCT--TCPLMLHKNCLGDSAQLEAKGNFLCPFCKYSHAISEYLEA 455
Query: 127 RQKAMMAKEALTSF 140
++ + A++ L F
Sbjct: 456 KKISSSARKELAIF 469