Miyakogusa Predicted Gene

Lj0g3v0115719.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0115719.1 Non Characterized Hit- tr|D7LC59|D7LC59_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,31.22,8e-19,LEA_2,Late embryogenesis abundant protein, LEA-14;
seg,NULL,gene.g8746.t1.1
         (202 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g062470.1 | transmembrane protein, putative | HC | chr3:28...   255   2e-68
Medtr2g011350.1 | late embryogenesis abundant protein | HC | chr...    52   5e-07

>Medtr3g062470.1 | transmembrane protein, putative | HC |
           chr3:28210208-28208789 | 20130731
          Length = 255

 Score =  255 bits (652), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 135/251 (53%), Positives = 162/251 (64%), Gaps = 49/251 (19%)

Query: 1   MEEQQTKPALVKNPSTGS-RKMGRRVAF-------------------------------- 27
           M E ++KP LVKN ST S RK GRRVAF                                
Sbjct: 1   MAEPESKPVLVKNSSTNSCRKSGRRVAFEVPSGHNHQSHSSGLDNNIDTSIDDFDKGHHN 60

Query: 28  ---FACCAWGCXXXXXXXXXXXXAGISYLGFLKAGMPKVD-------------SSQKMDA 71
               ACCAW C             GISYL FLKAGMPKV+             SSQKMDA
Sbjct: 61  PCFLACCAWSCLAIFIFVIVFLFLGISYLAFLKAGMPKVNVRTFNMTKLQVDSSSQKMDA 120

Query: 72  DISLGLRISNKNEKLKLLYGPLSVDVTSEDVPLGMAKLKGFSQMPKNDTDLDMTMALHNA 131
            I+LGLR SNKNE+LKLLYGPL V+V S DV LG  K+KGFSQ+PKNDT+LDMTM  ++ 
Sbjct: 121 IINLGLRFSNKNEELKLLYGPLFVEVISNDVLLGRTKVKGFSQVPKNDTNLDMTMTTNDE 180

Query: 132 DVDKYAADDLKSDINANEMVFDVYVSGHIGLKVGSLQMTDIPFLASCHQIKQMDVDFGRR 191
           +V+ YA DDLKSDI A EMVFDVYVSG+IG+++GSL M ++PFL+SC QIK+MDVD+GR+
Sbjct: 181 NVNVYATDDLKSDIKAYEMVFDVYVSGNIGVQIGSLHMVNVPFLSSCEQIKRMDVDYGRK 240

Query: 192 PECDVKMFAFR 202
           P+CD+KMF++R
Sbjct: 241 PDCDIKMFSYR 251


>Medtr2g011350.1 | late embryogenesis abundant protein | HC |
           chr2:2751617-2750551 | 20130731
          Length = 202

 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 8/133 (6%)

Query: 71  ADISLGLRISNKNEKLKLLYGPLSVDVTSEDVPLGMAKLKGFSQMPKNDTDLDMTMALHN 130
           A+    +R  N N K+ L Y  + V V  ED  L    ++ F Q  KN T +   +    
Sbjct: 73  ANFDFTIRSKNPNSKVSLYYDSIEVSVRYEDQTLATNAVQPFFQPHKNVTRMHARLTAQT 132

Query: 131 ADVDKYAADDLKSDINANEMVFDVYVSGHIGLKVGSLQMTDIPFLASCHQIKQMDVDFGR 190
             +      DLK + ++ ++  DV++   I  KVG L+        SC  +    V+F +
Sbjct: 133 VALYDSVPKDLKLERSSGDIALDVFIRARIRFKVGLLKTRHRTLRISCSPVL---VNFSK 189

Query: 191 -----RPECDVKM 198
                R  CDV+M
Sbjct: 190 AKSFERAYCDVEM 202