Miyakogusa Predicted Gene

Lj0g3v0115469.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0115469.1 tr|A9SB45|A9SB45_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_163909,30.9,3e-18,Xpo1,Exportin-1/Importin-beta-like;
seg,NULL; UNCHARACTERIZED,NULL; TRANSPORTIN 3 AND IMPORTIN
13,NU,CUFF.6751.1
         (306 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g084880.1 | transportin-like protein | HC | chr7:32792485-...   468   e-132
Medtr4g107290.2 | transportin-like protein | HC | chr4:44338575-...    59   7e-09
Medtr4g107290.1 | transportin-like protein | HC | chr4:44338586-...    59   8e-09

>Medtr7g084880.1 | transportin-like protein | HC |
           chr7:32792485-32774045 | 20130731
          Length = 987

 Score =  468 bits (1204), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 231/296 (78%), Positives = 250/296 (84%)

Query: 9   FKLQIQNEGYQLQXXXXXXXXXXXXXXVQRFSSGPPQLLTQICLALSALILQVVAHGNPI 68
            K +IQNEGY LQ              V+RFSSGPPQLLTQICLALSAL+LQVVAHGNPI
Sbjct: 67  LKRKIQNEGYLLQSGPKDALLNALLLAVKRFSSGPPQLLTQICLALSALVLQVVAHGNPI 126

Query: 69  EQLFYSLQNLQSQDGGNMAVLEMLTVLPEEVVDSQRIDSKMSSLHKSHYTQELLSHTSMV 128
           EQLFYSL+NLQS++ GN+AVLEMLTVLPEEVVD+QRIDSK++SLH SHYTQELLSHT MV
Sbjct: 127 EQLFYSLRNLQSEENGNIAVLEMLTVLPEEVVDNQRIDSKINSLHISHYTQELLSHTPMV 186

Query: 129 LEFLRQQSEINSDGSVQHHERNKKILRCFLSWIRAGCFSEISSGTLPAHPLLNFVFNSLQ 188
           LEFL +QSEIN DG+VQH+ERN+K+LRC LSW+RAGCFSEIS GTL AHPLLNFVFNSLQ
Sbjct: 187 LEFLLRQSEINFDGAVQHNERNRKVLRCLLSWVRAGCFSEISPGTLAAHPLLNFVFNSLQ 246

Query: 189 VPLTFDLAIEVLVELGTKHEGLPQILLCRVHYLKEVLLFPALTRGDMKVIGGVACLLSEI 248
              +FDLAIEVLVEL TKHEG+PQILLCRVHYLKEVLLFPAL RGDMKVIGG+ACLLSEI
Sbjct: 247 DSTSFDLAIEVLVELVTKHEGVPQILLCRVHYLKEVLLFPALNRGDMKVIGGLACLLSEI 306

Query: 249 GQAAPSLIVEXXXXXXXXXXXXXSCVAFPCEDWEIADSTLQFWSTLASYILGIDED 304
           GQAAPSLIVE             SCVAFP EDWEIADSTLQFWSTLASYIL ID D
Sbjct: 307 GQAAPSLIVEASAESLAVTDALLSCVAFPSEDWEIADSTLQFWSTLASYILAIDVD 362


>Medtr4g107290.2 | transportin-like protein | HC |
           chr4:44338575-44324517 | 20130731
          Length = 838

 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 66/271 (24%), Positives = 119/271 (43%), Gaps = 30/271 (11%)

Query: 36  VQRFSSGPPQLLTQICLALSALILQVVAHGNPIEQLFYSLQN-LQSQDGGNMAVLEMLTV 94
           ++ F  GPP++ TQI +A++AL + V A       +   L++ + S        LE+LTV
Sbjct: 91  LKMFHRGPPKVRTQISIAVAALAVHVPAQDWGDGGIVKWLRDEMDSNPEYIPGFLELLTV 150

Query: 95  LPEEVVDSQRIDSKMSSLHKSHYTQELLSHTSMVLEFLRQQSEINSDGSVQHHERNKKIL 154
           LPEEV++  +I ++     +  + +EL S   + L  L     I         E  +++L
Sbjct: 151 LPEEVLN-YKIAARPE--RRRQFEKELTSQMEVALNILTACLSIA--------ELKEQVL 199

Query: 155 RCFLSWIRAGCFSEISSGTLPAHPLLNFVFNSLQVPLTFDLAIEVLVEL----------- 203
             F SW+R      I    L +HPL+    ++L   L  + ++ V+ EL           
Sbjct: 200 EAFASWLRLK--HGIPGSVLSSHPLVLTALSNLNSELLSEASVNVISELIHYTTAGNIDG 257

Query: 204 GTKHEGLPQILLCRVHYLKEVLLFPALTRGDMKVIGGVACLLSEIGQAAPSLIVEXXXXX 263
            + +  L Q+++  V  LK  L   + +  D + +  +A L +++G +   LI       
Sbjct: 258 VSTNAPLIQVIVPHVMNLKSQL---SDSTKDEEDVKAIARLFADMGDSYVELIATGSDES 314

Query: 264 XXXXXXXXSCVAFPCEDWEIADSTLQFWSTL 294
                      + P  +++IA  T  FW +L
Sbjct: 315 MLIVHALLEVASHP--EYDIASMTFNFWHSL 343


>Medtr4g107290.1 | transportin-like protein | HC |
           chr4:44338586-44322940 | 20130731
          Length = 960

 Score = 58.5 bits (140), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 66/271 (24%), Positives = 119/271 (43%), Gaps = 30/271 (11%)

Query: 36  VQRFSSGPPQLLTQICLALSALILQVVAHGNPIEQLFYSLQN-LQSQDGGNMAVLEMLTV 94
           ++ F  GPP++ TQI +A++AL + V A       +   L++ + S        LE+LTV
Sbjct: 91  LKMFHRGPPKVRTQISIAVAALAVHVPAQDWGDGGIVKWLRDEMDSNPEYIPGFLELLTV 150

Query: 95  LPEEVVDSQRIDSKMSSLHKSHYTQELLSHTSMVLEFLRQQSEINSDGSVQHHERNKKIL 154
           LPEEV++  +I ++     +  + +EL S   + L  L     I         E  +++L
Sbjct: 151 LPEEVLN-YKIAARPE--RRRQFEKELTSQMEVALNILTACLSIA--------ELKEQVL 199

Query: 155 RCFLSWIRAGCFSEISSGTLPAHPLLNFVFNSLQVPLTFDLAIEVLVEL----------- 203
             F SW+R      I    L +HPL+    ++L   L  + ++ V+ EL           
Sbjct: 200 EAFASWLRLK--HGIPGSVLSSHPLVLTALSNLNSELLSEASVNVISELIHYTTAGNIDG 257

Query: 204 GTKHEGLPQILLCRVHYLKEVLLFPALTRGDMKVIGGVACLLSEIGQAAPSLIVEXXXXX 263
            + +  L Q+++  V  LK  L   + +  D + +  +A L +++G +   LI       
Sbjct: 258 VSTNAPLIQVIVPHVMNLKSQL---SDSTKDEEDVKAIARLFADMGDSYVELIATGSDES 314

Query: 264 XXXXXXXXSCVAFPCEDWEIADSTLQFWSTL 294
                      + P  +++IA  T  FW +L
Sbjct: 315 MLIVHALLEVASHP--EYDIASMTFNFWHSL 343