Miyakogusa Predicted Gene

Lj0g3v0114199.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0114199.1 Non Characterized Hit- tr|I1NCM0|I1NCM0_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.5088
PE=,64.18,4e-19,RING/U-box,NULL; no description,Zinc finger,
RING/FYVE/PHD-type; SEVEN IN ABSENTIA HOMOLOG,Seven-in-,CUFF.6648.1
         (142 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g017590.1 | ubiquitin ligase SINAT3 | HC | chr3:5040231-50...   176   6e-45
Medtr8g038370.1 | ubiquitin ligase SINAT3 | HC | chr8:14231466-1...   174   3e-44
Medtr8g027520.1 | ubiquitin ligase SINAT3 | HC | chr8:9833064-98...   103   4e-23
Medtr8g027520.2 | ubiquitin ligase SINAT3 | HC | chr8:9833950-98...   103   5e-23
Medtr7g117415.1 | ubiquitin ligase SINAT3 | HC | chr7:48544033-4...   100   6e-22
Medtr3g091510.1 | ubiquitin ligase SINAT3 | HC | chr3:41635603-4...    99   1e-21
Medtr1g008120.1 | ubiquitin ligase SINAT3 | HC | chr1:732376-737...    99   1e-21
Medtr1g054335.1 | ubiquitin ligase SINAT3 | HC | chr1:23400280-2...    89   2e-18
Medtr7g093600.2 | ubiquitin ligase SINAT3 | HC | chr7:37208750-3...    87   5e-18
Medtr7g093600.1 | ubiquitin ligase SINAT3 | HC | chr7:37208267-3...    87   5e-18
Medtr8g038350.1 | hypothetical protein | LC | chr8:14223312-1422...    73   7e-14
Medtr7g094390.1 | seven in absentia family protein | LC | chr7:3...    48   3e-06
Medtr5g076720.1 | seven in absentia family protein | LC | chr5:3...    47   6e-06

>Medtr3g017590.1 | ubiquitin ligase SINAT3 | HC |
           chr3:5040231-5036144 | 20130731
          Length = 304

 Score =  176 bits (446), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 81/104 (77%), Positives = 88/104 (84%)

Query: 1   MASSNPLFDDIWSKADVDPPQNEELTGVIELVNDTAQATLKPNGTVSSSVRELLECPVCL 60
           M SSNP FDDI S+  VDPPQ EE T + ELVND  Q  +KPNGTVSSSVRELLECPVCL
Sbjct: 1   MTSSNPFFDDIRSRPGVDPPQTEESTEIPELVNDPIQTVVKPNGTVSSSVRELLECPVCL 60

Query: 61  NAMYPPIHQCSNGHTICSGCKPRVHNRCPTCRHELGNISALVVD 104
           NAMYPPIHQCSNGHT+CSGCKPRVH+RCPTCRHELGNI  L ++
Sbjct: 61  NAMYPPIHQCSNGHTLCSGCKPRVHDRCPTCRHELGNIRCLALE 104


>Medtr8g038370.1 | ubiquitin ligase SINAT3 | HC |
           chr8:14231466-14233195 | 20130731
          Length = 363

 Score =  174 bits (440), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 84/104 (80%), Positives = 86/104 (82%)

Query: 1   MASSNPLFDDIWSKADVDPPQNEELTGVIELVNDTAQATLKPNGTVSSSVRELLECPVCL 60
           MA SNPLFDDI S  DVDPPQ EE T V  LVND AQ  LKP GTV SSVRELLECPVCL
Sbjct: 60  MALSNPLFDDIRSNIDVDPPQKEESTDVGILVNDPAQTALKPTGTVLSSVRELLECPVCL 119

Query: 61  NAMYPPIHQCSNGHTICSGCKPRVHNRCPTCRHELGNISALVVD 104
           NAMYPPIHQCSNGHTICS CKPRVHNRCPTCRHELGNI  L ++
Sbjct: 120 NAMYPPIHQCSNGHTICSDCKPRVHNRCPTCRHELGNIRCLALE 163


>Medtr8g027520.1 | ubiquitin ligase SINAT3 | HC |
           chr8:9833064-9837489 | 20130731
          Length = 318

 Score =  103 bits (258), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 47/74 (63%), Positives = 56/74 (75%), Gaps = 1/74 (1%)

Query: 32  VNDTAQATLKPNGT-VSSSVRELLECPVCLNAMYPPIHQCSNGHTICSGCKPRVHNRCPT 90
            + +  + L  NGT  S+SV ELLECPVC N+MYPPIHQC NGHT+CS CK RVHNRCPT
Sbjct: 31  FSSSTTSKLHSNGTPTSTSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPT 90

Query: 91  CRHELGNISALVVD 104
           CR ELG+I  L ++
Sbjct: 91  CRQELGDIRCLALE 104


>Medtr8g027520.2 | ubiquitin ligase SINAT3 | HC |
           chr8:9833950-9837762 | 20130731
          Length = 309

 Score =  103 bits (257), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 47/74 (63%), Positives = 56/74 (75%), Gaps = 1/74 (1%)

Query: 32  VNDTAQATLKPNGT-VSSSVRELLECPVCLNAMYPPIHQCSNGHTICSGCKPRVHNRCPT 90
            + +  + L  NGT  S+SV ELLECPVC N+MYPPIHQC NGHT+CS CK RVHNRCPT
Sbjct: 22  FSSSTTSKLHSNGTPTSTSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPT 81

Query: 91  CRHELGNISALVVD 104
           CR ELG+I  L ++
Sbjct: 82  CRQELGDIRCLALE 95


>Medtr7g117415.1 | ubiquitin ligase SINAT3 | HC |
           chr7:48544033-48541598 | 20130731
          Length = 323

 Score =  100 bits (248), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 43/67 (64%), Positives = 52/67 (77%)

Query: 38  ATLKPNGTVSSSVRELLECPVCLNAMYPPIHQCSNGHTICSGCKPRVHNRCPTCRHELGN 97
           + L  N   ++SV +LLECPVC N+MYPPIHQC NGHT+CS CK RVHNRCPTCR ELG+
Sbjct: 46  SKLLNNAPTTTSVHDLLECPVCTNSMYPPIHQCHNGHTLCSNCKTRVHNRCPTCRQELGD 105

Query: 98  ISALVVD 104
           I  L ++
Sbjct: 106 IRCLALE 112


>Medtr3g091510.1 | ubiquitin ligase SINAT3 | HC |
           chr3:41635603-41632500 | 20130731
          Length = 324

 Score = 99.0 bits (245), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 42/58 (72%), Positives = 49/58 (84%)

Query: 47  SSSVRELLECPVCLNAMYPPIHQCSNGHTICSGCKPRVHNRCPTCRHELGNISALVVD 104
           ++SV ELLECPVC N+MYPPIHQC NGHT+CS CK RVHNRCPTCR ELG+I  L ++
Sbjct: 54  ATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALE 111


>Medtr1g008120.1 | ubiquitin ligase SINAT3 | HC | chr1:732376-737785
           | 20130731
          Length = 333

 Score = 98.6 bits (244), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 42/58 (72%), Positives = 49/58 (84%)

Query: 47  SSSVRELLECPVCLNAMYPPIHQCSNGHTICSGCKPRVHNRCPTCRHELGNISALVVD 104
           ++SV ELLECPVC N+MYPPIHQC NGHT+CS CK RVHNRCPTCR ELG+I  L ++
Sbjct: 62  ATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALE 119


>Medtr1g054335.1 | ubiquitin ligase SINAT3 | HC |
           chr1:23400280-23404620 | 20130731
          Length = 309

 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 41/63 (65%), Positives = 47/63 (74%), Gaps = 1/63 (1%)

Query: 43  NGTVS-SSVRELLECPVCLNAMYPPIHQCSNGHTICSGCKPRVHNRCPTCRHELGNISAL 101
           NG  S + V +LLECPVC N MYPPIHQC NGHT+CS CK  VHNRCPTC  +LGNI  L
Sbjct: 47  NGNHSKNGVYDLLECPVCKNLMYPPIHQCPNGHTLCSNCKITVHNRCPTCHRDLGNIRCL 106

Query: 102 VVD 104
            ++
Sbjct: 107 ALE 109


>Medtr7g093600.2 | ubiquitin ligase SINAT3 | HC |
           chr7:37208750-37211962 | 20130731
          Length = 310

 Score = 87.0 bits (214), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 44/92 (47%), Positives = 53/92 (57%), Gaps = 5/92 (5%)

Query: 13  SKADVDPPQNEELTGVIELVNDTAQATLKPNGTVSSSVRELLECPVCLNAMYPPIHQCSN 72
            KA  +   N  LT    +  +    T   NG     V +LL CPVC N MYPPI+QC N
Sbjct: 24  GKAKSEAKINSTLTKSTSVGLNGKHGTSSKNG-----VHDLLGCPVCKNLMYPPIYQCPN 78

Query: 73  GHTICSGCKPRVHNRCPTCRHELGNISALVVD 104
           GHT+CS CK  VHN CPTC H+LGNI  L ++
Sbjct: 79  GHTLCSNCKIEVHNLCPTCHHDLGNIRCLALE 110


>Medtr7g093600.1 | ubiquitin ligase SINAT3 | HC |
           chr7:37208267-37212195 | 20130731
          Length = 310

 Score = 87.0 bits (214), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 44/92 (47%), Positives = 53/92 (57%), Gaps = 5/92 (5%)

Query: 13  SKADVDPPQNEELTGVIELVNDTAQATLKPNGTVSSSVRELLECPVCLNAMYPPIHQCSN 72
            KA  +   N  LT    +  +    T   NG     V +LL CPVC N MYPPI+QC N
Sbjct: 24  GKAKSEAKINSTLTKSTSVGLNGKHGTSSKNG-----VHDLLGCPVCKNLMYPPIYQCPN 78

Query: 73  GHTICSGCKPRVHNRCPTCRHELGNISALVVD 104
           GHT+CS CK  VHN CPTC H+LGNI  L ++
Sbjct: 79  GHTLCSNCKIEVHNLCPTCHHDLGNIRCLALE 110


>Medtr8g038350.1 | hypothetical protein | LC |
          chr8:14223312-14225456 | 20130731
          Length = 191

 Score = 73.2 bits (178), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 37/53 (69%), Positives = 40/53 (75%)

Query: 13 SKADVDPPQNEELTGVIELVNDTAQATLKPNGTVSSSVRELLECPVCLNAMYP 65
          S +D DPP+NEE T V ELVND AQ  L P  TV SSVR+LLECPVCLN MYP
Sbjct: 15 SNSDDDPPKNEESTDVGELVNDPAQTALSPIETVLSSVRKLLECPVCLNRMYP 67


>Medtr7g094390.1 | seven in absentia family protein | LC |
           chr7:37573807-37577744 | 20130731
          Length = 477

 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 17/40 (42%), Positives = 25/40 (62%)

Query: 52  ELLECPVCLNAMYPPIHQCSNGHTICSGCKPRVHNRCPTC 91
           ++L+C +C   +  P+ QC NGH  CS C P++ N CP C
Sbjct: 171 KVLDCYICFQPLTIPVFQCDNGHIACSTCYPKLRNTCPKC 210


>Medtr5g076720.1 | seven in absentia family protein | LC |
           chr5:32736985-32740633 | 20130731
          Length = 390

 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 33/62 (53%)

Query: 30  ELVNDTAQATLKPNGTVSSSVRELLECPVCLNAMYPPIHQCSNGHTICSGCKPRVHNRCP 89
           E+VN     +   +  +  S  +LLEC  C   +  P+ QC NGH +CS C P++ N+C 
Sbjct: 59  EIVNSVTDVSKNSSVPLIISNPKLLECCNCYQPLKIPVFQCDNGHIVCSTCCPKLRNKCH 118

Query: 90  TC 91
            C
Sbjct: 119 KC 120