Miyakogusa Predicted Gene

Lj0g3v0114179.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0114179.1 Non Characterized Hit- tr|B7FJB0|B7FJB0_MEDTR
Uncharacterized protein OS=Medicago truncatula PE=2
SV,88.34,0,Cyclin-like,Cyclin-like; Cyclin,Cyclin PHO80-like; no
description,Cyclin-like; seg,NULL; SUBFAMILY N,CUFF.6703.1
         (227 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g028060.1 | cyclin p4 | HC | chr4:9659806-9657678 | 20130731    357   3e-99
Medtr8g007380.1 | cyclin p4 | HC | chr8:1499976-1501648 | 20130731    134   6e-32
Medtr7g081130.1 | cyclin p4 | HC | chr7:30934930-30933268 | 2013...   134   1e-31
Medtr2g088860.1 | cyclin p4 | HC | chr2:37475502-37474092 | 2013...   132   3e-31
Medtr7g094880.2 | cyclin p4 | HC | chr7:37891633-37894536 | 2013...   104   8e-23
Medtr7g094880.1 | cyclin p4 | HC | chr7:37892086-37894536 | 2013...   104   8e-23

>Medtr4g028060.1 | cyclin p4 | HC | chr4:9659806-9657678 | 20130731
          Length = 218

 Score =  357 bits (917), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 181/219 (82%), Positives = 189/219 (86%), Gaps = 7/219 (3%)

Query: 10  LTISPRKLRYDLYSYSYQEDSNTPLVINVLSSLIERNMARTKRIVKNCS-RSLSKAISAN 68
           LTISPRKL YDLYSYSY+EDSNTPLVINVL+SLIERNMAR +RIVKNCS R LSKA S  
Sbjct: 6   LTISPRKLHYDLYSYSYKEDSNTPLVINVLASLIERNMARAQRIVKNCSSRVLSKA-STK 64

Query: 69  IFDCREIPDMTIQSYLERIFRYTRAGPSVYVVAYVYIDRFCQNNPGFRINARNVHRLLIT 128
           IFDCREIPD+TIQSYLERIFRYTRAGPSVYVVAYVYIDRFCQNN GFRIN+RNVHRLLIT
Sbjct: 65  IFDCREIPDLTIQSYLERIFRYTRAGPSVYVVAYVYIDRFCQNNLGFRINSRNVHRLLIT 124

Query: 129 TIMVASKYVEDMNYRNSYFARVGGXXXXXXXXXXXXXXXMMGFKLHVNVSVFESYCCHLE 188
           TIMVASKYVEDMN+RNSYFA+VGG               MM FKLHVNVSVFESYC HLE
Sbjct: 125 TIMVASKYVEDMNFRNSYFAKVGGLTTSELNELELEFLFMMNFKLHVNVSVFESYCSHLE 184

Query: 189 REVSIGGGYHIERTLRCAEEIKTRQIEERGYTQIARVML 227
           REVSIGGGYHIERTLRCAEEIK     ERG+TQIARVML
Sbjct: 185 REVSIGGGYHIERTLRCAEEIK-----ERGHTQIARVML 218


>Medtr8g007380.1 | cyclin p4 | HC | chr8:1499976-1501648 | 20130731
          Length = 200

 Score =  134 bits (338), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 69/164 (42%), Positives = 100/164 (60%), Gaps = 8/164 (4%)

Query: 28  EDSNTPLVINVLSSLIERNMARTKRIVKNCSRSLSKAISANIFDCREIPDMTIQSYLERI 87
           E    P +IN LSSL+ER +A +    +N  +        +IF     P+++IQSYLERI
Sbjct: 5   ESPMMPKLINFLSSLLER-VAESNDETQNHHK-------ISIFHGLSRPNISIQSYLERI 56

Query: 88  FRYTRAGPSVYVVAYVYIDRFCQNNPGFRINARNVHRLLITTIMVASKYVEDMNYRNSYF 147
           F+Y     S ++VAYVY+DRF Q  P   IN+ NVHRLLIT++MVA+K+++D+ Y N+Y+
Sbjct: 57  FKYANCSSSCFIVAYVYLDRFTQTQPSLPINSFNVHRLLITSVMVAAKFMDDVCYNNAYY 116

Query: 148 ARVGGXXXXXXXXXXXXXXXMMGFKLHVNVSVFESYCCHLEREV 191
           A+VGG                +GF L+V    F++YC HL+RE+
Sbjct: 117 AKVGGITKTEMNFLELDFLFGLGFNLNVTPVTFQAYCVHLQREM 160


>Medtr7g081130.1 | cyclin p4 | HC | chr7:30934930-30933268 |
           20130731
          Length = 203

 Score =  134 bits (336), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 68/159 (42%), Positives = 102/159 (64%), Gaps = 6/159 (3%)

Query: 33  PLVINVLSSLIERNMARTKRIVKNCSRSLSKAISANIFDCREIPDMTIQSYLERIFRYTR 92
           P +I  LSSL++R +A +  I +   + L + IS  +F     P+++IQ+YLERIF+Y  
Sbjct: 11  PKLIAFLSSLLKR-VAESNDINQ---QLLEQKIS--VFQGLTCPNISIQNYLERIFKYAN 64

Query: 93  AGPSVYVVAYVYIDRFCQNNPGFRINARNVHRLLITTIMVASKYVEDMNYRNSYFARVGG 152
             PS ++VAYVY+DRF Q  P   IN+ NVHRLLIT++MVA+K+++DM Y N+Y+A+VGG
Sbjct: 65  CSPSCFIVAYVYLDRFTQRQPSLPINSFNVHRLLITSVMVAAKFMDDMYYNNAYYAKVGG 124

Query: 153 XXXXXXXXXXXXXXXMMGFKLHVNVSVFESYCCHLEREV 191
                           +GF L+V  + F++YC HL+ E+
Sbjct: 125 ITTIEMNFLELDFLFGLGFHLNVTPNTFQAYCVHLQSEM 163


>Medtr2g088860.1 | cyclin p4 | HC | chr2:37475502-37474092 |
           20130731
          Length = 233

 Score =  132 bits (332), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 72/182 (39%), Positives = 106/182 (58%), Gaps = 9/182 (4%)

Query: 31  NTPLVINVLSSLIERNMARTKRIVKNCSRSLSK--------AISANIFDCREIPDMTIQS 82
           N P V+ +LSS +E+ ++R +++V   ++ L K          S N+F     P ++I  
Sbjct: 24  NLPRVLWILSSTLEKLVSRNEKLVDELNQELDKLNNGSVRLGKSLNLFHGVRAPGISIPK 83

Query: 83  YLERIFRYTRAGPSVYVVAYVYIDRFCQNNPGFRINARNVHRLLITTIMVASKYVEDMNY 142
           YLERI++YT   PS +VV YVYID     +P   + + NVHRLL+T++MVASK ++D +Y
Sbjct: 84  YLERIYKYTNCSPSCFVVGYVYIDMLTHKHPDSLVLSLNVHRLLVTSVMVASKMLDDEHY 143

Query: 143 RNSYFARVGGXXXXXXXXXXXXXXXMMGFKLHVNVSVFESYCCHLEREVSIGG-GYHIER 201
            N+ +ARVGG               ++ FK+ V   VFESYC HLE+E+ + G G  IER
Sbjct: 144 NNAVYARVGGVSNAELNKLELELLFLLDFKVMVCPRVFESYCLHLEKEMLVNGTGLKIER 203

Query: 202 TL 203
            L
Sbjct: 204 IL 205


>Medtr7g094880.2 | cyclin p4 | HC | chr7:37891633-37894536 |
           20130731
          Length = 218

 Score =  104 bits (259), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 47/123 (38%), Positives = 75/123 (60%), Gaps = 1/123 (0%)

Query: 68  NIFDCREIPDMTIQSYLERIFRYTRAGPSVYVVAYVYIDRFCQNNPGFRINARNVHRLLI 127
            +F     P ++++ Y++RIF+Y+   PS +VVA++Y+DR  QN    ++ + NVHRLLI
Sbjct: 62  TVFHGLSAPTLSLRKYIDRIFKYSGCSPSCFVVAHIYVDRLLQNTE-IKLTSLNVHRLLI 120

Query: 128 TTIMVASKYVEDMNYRNSYFARVGGXXXXXXXXXXXXXXXMMGFKLHVNVSVFESYCCHL 187
           T+IM+A+K+++D  + N+Y+ARVGG                + F+L V+V  F  YC  L
Sbjct: 121 TSIMLAAKFMDDAFFNNAYYARVGGVKTCELNRLEMSFLFGIDFRLQVSVDTFHKYCWQL 180

Query: 188 ERE 190
           E E
Sbjct: 181 EEE 183


>Medtr7g094880.1 | cyclin p4 | HC | chr7:37892086-37894536 |
           20130731
          Length = 233

 Score =  104 bits (259), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 47/123 (38%), Positives = 75/123 (60%), Gaps = 1/123 (0%)

Query: 68  NIFDCREIPDMTIQSYLERIFRYTRAGPSVYVVAYVYIDRFCQNNPGFRINARNVHRLLI 127
            +F     P ++++ Y++RIF+Y+   PS +VVA++Y+DR  QN    ++ + NVHRLLI
Sbjct: 77  TVFHGLSAPTLSLRKYIDRIFKYSGCSPSCFVVAHIYVDRLLQNTE-IKLTSLNVHRLLI 135

Query: 128 TTIMVASKYVEDMNYRNSYFARVGGXXXXXXXXXXXXXXXMMGFKLHVNVSVFESYCCHL 187
           T+IM+A+K+++D  + N+Y+ARVGG                + F+L V+V  F  YC  L
Sbjct: 136 TSIMLAAKFMDDAFFNNAYYARVGGVKTCELNRLEMSFLFGIDFRLQVSVDTFHKYCWQL 195

Query: 188 ERE 190
           E E
Sbjct: 196 EEE 198