Miyakogusa Predicted Gene

Lj0g3v0113699.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0113699.1 Non Characterized Hit- tr|B9T8F4|B9T8F4_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,83.33,3e-19,UNCHARACTERIZED,NULL; LMBR1,LMBR1-like membrane protein;
seg,NULL,CUFF.6612.1
         (136 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g086840.1 | LMBR1 integral membrane-like protein | HC | ch...   229   6e-61
Medtr8g089925.1 | LMBR1 integral membrane-like protein | HC | ch...   204   1e-53
Medtr4g094110.1 | LMBR1 integral membrane-like protein | HC | ch...   165   1e-41

>Medtr3g086840.1 | LMBR1 integral membrane-like protein | HC |
           chr3:39370616-39360812 | 20130731
          Length = 720

 Score =  229 bits (583), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 112/136 (82%), Positives = 119/136 (87%)

Query: 1   MWVFYLISLPLTTGMVLFTLRYFAGPDVPRYVLFTVGYTWFCSLSVIILVPADIWATMSS 60
           MWVFYLISLPLTTGMVLFTLRYFAGPDVPRYVLFTVGYTWFCSLS+IILVPADIWAT++S
Sbjct: 1   MWVFYLISLPLTTGMVLFTLRYFAGPDVPRYVLFTVGYTWFCSLSIIILVPADIWATIAS 60

Query: 61  HSENGGIXXXXXXXXXXXXXXXXAVVPLIQGFEDAGDFTVSERLKTSVHVNLVFYLIVGS 120
           H+ENGGI                AV PLIQGFEDAGDFTVSERLKTSVHVNLVFYLIVGS
Sbjct: 61  HNENGGISFFWSWSYWSTFLLTWAVAPLIQGFEDAGDFTVSERLKTSVHVNLVFYLIVGS 120

Query: 121 IGLFGLVLLIMMHRSW 136
           IGLFG++LLIMMHR+W
Sbjct: 121 IGLFGIILLIMMHRTW 136


>Medtr8g089925.1 | LMBR1 integral membrane-like protein | HC |
           chr8:37558335-37548952 | 20130731
          Length = 722

 Score =  204 bits (520), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 104/136 (76%), Positives = 110/136 (80%)

Query: 1   MWVFYLISLPLTTGMVLFTLRYFAGPDVPRYVLFTVGYTWFCSLSVIILVPADIWATMSS 60
           MWVFY+ISLPLT GMVL TLRYFAGP VP YVLFTVGYTWF SLS+IILVPADIW T+SS
Sbjct: 1   MWVFYMISLPLTMGMVLLTLRYFAGPSVPLYVLFTVGYTWFVSLSIIILVPADIWVTISS 60

Query: 61  HSENGGIXXXXXXXXXXXXXXXXAVVPLIQGFEDAGDFTVSERLKTSVHVNLVFYLIVGS 120
             +NGGI                AVVPLIQGFEDAGDFTVSERLKTS+HVNLVFYLIVGS
Sbjct: 61  QLDNGGISFFWSWSYWSTFLLTWAVVPLIQGFEDAGDFTVSERLKTSIHVNLVFYLIVGS 120

Query: 121 IGLFGLVLLIMMHRSW 136
           IG FGL+LLIMMHR W
Sbjct: 121 IGFFGLILLIMMHRHW 136


>Medtr4g094110.1 | LMBR1 integral membrane-like protein | HC |
           chr4:37281984-37276654 | 20130731
          Length = 709

 Score =  165 bits (418), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 82/136 (60%), Positives = 102/136 (75%), Gaps = 1/136 (0%)

Query: 1   MWVFYLISLPLTTGMVLFTLRYFAGPDVPRYVLFTVGYTWFCSLSVIILVPADIWATMSS 60
           M VFY+ SLP+T GMV+FTLRYF+GPDVP+YVLFTV Y WFCS+S+IILVPADIW T+ +
Sbjct: 1   MRVFYMFSLPMTIGMVIFTLRYFSGPDVPKYVLFTVAYAWFCSISIIILVPADIWTTL-N 59

Query: 61  HSENGGIXXXXXXXXXXXXXXXXAVVPLIQGFEDAGDFTVSERLKTSVHVNLVFYLIVGS 120
            + N  I                AVVPL+QG+EDAGDFTV  RL+TS+H NLVFYL +GS
Sbjct: 60  DAVNVTISFLWSLSYWSTFLLTWAVVPLLQGYEDAGDFTVKARLRTSLHGNLVFYLSLGS 119

Query: 121 IGLFGLVLLIMMHRSW 136
           + LFGL+LLI +++ W
Sbjct: 120 VALFGLILLITLNKFW 135