Miyakogusa Predicted Gene
- Lj0g3v0113539.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0113539.1 tr|Q9LMT2|Q9LMT2_ARATH At1g17980 OS=Arabidopsis
thaliana GN=F2H15.20 PE=2 SV=1,74.14,5e-19,PAP_RNA-bind,Poly(A)
polymerase, RNA-binding domain; PAP/Archaeal CCA-adding enzyme,
C-terminal doma,CUFF.6601.1
(74 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr8g106560.2 | poly(A) polymerase-like protein | HC | chr8:44... 106 4e-24
Medtr8g106560.1 | poly(A) polymerase-like protein | HC | chr8:44... 106 4e-24
Medtr8g106560.3 | poly(A) polymerase-like protein | HC | chr8:44... 106 4e-24
Medtr6g082000.1 | poly(A) polymerase-like protein | HC | chr6:30... 92 7e-20
Medtr8g014560.1 | poly(A) polymerase | HC | chr8:4593559-4588712... 70 5e-13
Medtr8g014560.2 | poly(A) polymerase | HC | chr8:4593559-4588003... 70 5e-13
Medtr8g014560.7 | poly(A) polymerase | HC | chr8:4592600-4588712... 70 5e-13
Medtr8g014560.4 | poly(A) polymerase | HC | chr8:4593559-4588712... 70 5e-13
Medtr8g014560.5 | poly(A) polymerase | HC | chr8:4593559-4588712... 69 7e-13
Medtr8g014560.6 | poly(A) polymerase | HC | chr8:4593559-4588712... 69 7e-13
Medtr8g014560.3 | poly(A) polymerase | HC | chr8:4593559-4588008... 69 7e-13
Medtr3g110375.1 | poly(A) polymerase-like protein | HC | chr3:51... 65 2e-11
Medtr3g110375.7 | poly(A) polymerase-like protein | HC | chr3:51... 65 2e-11
Medtr3g110375.3 | poly(A) polymerase-like protein | HC | chr3:51... 65 2e-11
Medtr3g110375.4 | poly(A) polymerase-like protein | HC | chr3:51... 65 2e-11
Medtr3g110375.9 | poly(A) polymerase-like protein | HC | chr3:51... 64 3e-11
Medtr3g110375.5 | poly(A) polymerase-like protein | HC | chr3:51... 64 3e-11
Medtr3g110375.6 | poly(A) polymerase-like protein | HC | chr3:51... 64 3e-11
Medtr3g110375.2 | poly(A) polymerase-like protein | HC | chr3:51... 64 3e-11
Medtr3g110375.8 | poly(A) polymerase-like protein | HC | chr3:51... 64 3e-11
>Medtr8g106560.2 | poly(A) polymerase-like protein | HC |
chr8:44967321-44960896 | 20130731
Length = 754
Score = 106 bits (265), Expect = 4e-24, Method: Composition-based stats.
Identities = 45/57 (78%), Positives = 51/57 (89%), Gaps = 1/57 (1%)
Query: 1 MLQCHPHPGDFSDKSRPLYCYYFMGLQRKQG-PFNEGEQFDIRLAIEKFKHTINMYT 56
MLQCHPHPGDFSDKSRPL+C YFMGLQRKQG P NEG QFD+RL +E+FKH++N YT
Sbjct: 410 MLQCHPHPGDFSDKSRPLHCSYFMGLQRKQGVPANEGGQFDMRLTVEEFKHSVNAYT 466
>Medtr8g106560.1 | poly(A) polymerase-like protein | HC |
chr8:44967313-44960863 | 20130731
Length = 754
Score = 106 bits (265), Expect = 4e-24, Method: Composition-based stats.
Identities = 45/57 (78%), Positives = 51/57 (89%), Gaps = 1/57 (1%)
Query: 1 MLQCHPHPGDFSDKSRPLYCYYFMGLQRKQG-PFNEGEQFDIRLAIEKFKHTINMYT 56
MLQCHPHPGDFSDKSRPL+C YFMGLQRKQG P NEG QFD+RL +E+FKH++N YT
Sbjct: 410 MLQCHPHPGDFSDKSRPLHCSYFMGLQRKQGVPANEGGQFDMRLTVEEFKHSVNAYT 466
>Medtr8g106560.3 | poly(A) polymerase-like protein | HC |
chr8:44967321-44960896 | 20130731
Length = 754
Score = 106 bits (265), Expect = 4e-24, Method: Composition-based stats.
Identities = 45/57 (78%), Positives = 51/57 (89%), Gaps = 1/57 (1%)
Query: 1 MLQCHPHPGDFSDKSRPLYCYYFMGLQRKQG-PFNEGEQFDIRLAIEKFKHTINMYT 56
MLQCHPHPGDFSDKSRPL+C YFMGLQRKQG P NEG QFD+RL +E+FKH++N YT
Sbjct: 410 MLQCHPHPGDFSDKSRPLHCSYFMGLQRKQGVPANEGGQFDMRLTVEEFKHSVNAYT 466
>Medtr6g082000.1 | poly(A) polymerase-like protein | HC |
chr6:30599628-30606293 | 20130731
Length = 752
Score = 92.4 bits (228), Expect = 7e-20, Method: Composition-based stats.
Identities = 40/57 (70%), Positives = 47/57 (82%), Gaps = 1/57 (1%)
Query: 1 MLQCHPHPGDFSDKSRPLYCYYFMGLQRKQG-PFNEGEQFDIRLAIEKFKHTINMYT 56
MLQCHP+PG+FSDKSR + YFMGLQRKQG P +EGEQFDIR +E+FKH +N YT
Sbjct: 409 MLQCHPYPGEFSDKSRSFHQCYFMGLQRKQGVPVSEGEQFDIRQTVEEFKHNVNAYT 465
>Medtr8g014560.1 | poly(A) polymerase | HC | chr8:4593559-4588712 |
20130731
Length = 633
Score = 70.1 bits (170), Expect = 5e-13, Method: Composition-based stats.
Identities = 31/56 (55%), Positives = 41/56 (73%), Gaps = 2/56 (3%)
Query: 2 LQCHPHPGDFSDKSRPL-YCYYFMGLQRKQGPF-NEGEQFDIRLAIEKFKHTINMY 55
LQCHP+P ++ D +R + +FMGLQRKQG EG+QFDIR +E F+H+INMY
Sbjct: 326 LQCHPYPREYIDDTRKCSHSAFFMGLQRKQGEVVQEGQQFDIRGTVEAFRHSINMY 381
>Medtr8g014560.2 | poly(A) polymerase | HC | chr8:4593559-4588003 |
20130731
Length = 633
Score = 70.1 bits (170), Expect = 5e-13, Method: Composition-based stats.
Identities = 31/56 (55%), Positives = 41/56 (73%), Gaps = 2/56 (3%)
Query: 2 LQCHPHPGDFSDKSRPL-YCYYFMGLQRKQGPF-NEGEQFDIRLAIEKFKHTINMY 55
LQCHP+P ++ D +R + +FMGLQRKQG EG+QFDIR +E F+H+INMY
Sbjct: 326 LQCHPYPREYIDDTRKCSHSAFFMGLQRKQGEVVQEGQQFDIRGTVEAFRHSINMY 381
>Medtr8g014560.7 | poly(A) polymerase | HC | chr8:4592600-4588712 |
20130731
Length = 633
Score = 70.1 bits (170), Expect = 5e-13, Method: Composition-based stats.
Identities = 31/56 (55%), Positives = 41/56 (73%), Gaps = 2/56 (3%)
Query: 2 LQCHPHPGDFSDKSRPL-YCYYFMGLQRKQGPF-NEGEQFDIRLAIEKFKHTINMY 55
LQCHP+P ++ D +R + +FMGLQRKQG EG+QFDIR +E F+H+INMY
Sbjct: 326 LQCHPYPREYIDDTRKCSHSAFFMGLQRKQGEVVQEGQQFDIRGTVEAFRHSINMY 381
>Medtr8g014560.4 | poly(A) polymerase | HC | chr8:4593559-4588712 |
20130731
Length = 625
Score = 70.1 bits (170), Expect = 5e-13, Method: Composition-based stats.
Identities = 31/56 (55%), Positives = 41/56 (73%), Gaps = 2/56 (3%)
Query: 2 LQCHPHPGDFSDKSRPL-YCYYFMGLQRKQGPF-NEGEQFDIRLAIEKFKHTINMY 55
LQCHP+P ++ D +R + +FMGLQRKQG EG+QFDIR +E F+H+INMY
Sbjct: 326 LQCHPYPREYIDDTRKCSHSAFFMGLQRKQGEVVQEGQQFDIRGTVEAFRHSINMY 381
>Medtr8g014560.5 | poly(A) polymerase | HC | chr8:4593559-4588712 |
20130731
Length = 638
Score = 69.3 bits (168), Expect = 7e-13, Method: Composition-based stats.
Identities = 31/56 (55%), Positives = 41/56 (73%), Gaps = 2/56 (3%)
Query: 2 LQCHPHPGDFSDKSRPL-YCYYFMGLQRKQGPF-NEGEQFDIRLAIEKFKHTINMY 55
LQCHP+P ++ D +R + +FMGLQRKQG EG+QFDIR +E F+H+INMY
Sbjct: 326 LQCHPYPREYIDDTRKCSHSAFFMGLQRKQGEVVQEGQQFDIRGTVEAFRHSINMY 381
>Medtr8g014560.6 | poly(A) polymerase | HC | chr8:4593559-4588712 |
20130731
Length = 638
Score = 69.3 bits (168), Expect = 7e-13, Method: Composition-based stats.
Identities = 31/56 (55%), Positives = 41/56 (73%), Gaps = 2/56 (3%)
Query: 2 LQCHPHPGDFSDKSRPL-YCYYFMGLQRKQGPF-NEGEQFDIRLAIEKFKHTINMY 55
LQCHP+P ++ D +R + +FMGLQRKQG EG+QFDIR +E F+H+INMY
Sbjct: 326 LQCHPYPREYIDDTRKCSHSAFFMGLQRKQGEVVQEGQQFDIRGTVEAFRHSINMY 381
>Medtr8g014560.3 | poly(A) polymerase | HC | chr8:4593559-4588008 |
20130731
Length = 638
Score = 69.3 bits (168), Expect = 7e-13, Method: Composition-based stats.
Identities = 31/56 (55%), Positives = 41/56 (73%), Gaps = 2/56 (3%)
Query: 2 LQCHPHPGDFSDKSRPL-YCYYFMGLQRKQGPF-NEGEQFDIRLAIEKFKHTINMY 55
LQCHP+P ++ D +R + +FMGLQRKQG EG+QFDIR +E F+H+INMY
Sbjct: 326 LQCHPYPREYIDDTRKCSHSAFFMGLQRKQGEVVQEGQQFDIRGTVEAFRHSINMY 381
>Medtr3g110375.1 | poly(A) polymerase-like protein | HC |
chr3:51561537-51555466 | 20130731
Length = 701
Score = 64.7 bits (156), Expect = 2e-11, Method: Composition-based stats.
Identities = 29/57 (50%), Positives = 42/57 (73%), Gaps = 2/57 (3%)
Query: 1 MLQCHPHPGDFSDKSRPL-YCYYFMGLQRKQGPF-NEGEQFDIRLAIEKFKHTINMY 55
MLQCHP+P +++D S+P + +FMGLQRK+G EG+QFDIR +++F+ I MY
Sbjct: 396 MLQCHPYPHEYADTSKPCAHSAFFMGLQRKEGVRGQEGQQFDIRGTVDEFRREIIMY 452
>Medtr3g110375.7 | poly(A) polymerase-like protein | HC |
chr3:51561683-51555466 | 20130731
Length = 722
Score = 64.7 bits (156), Expect = 2e-11, Method: Composition-based stats.
Identities = 29/57 (50%), Positives = 42/57 (73%), Gaps = 2/57 (3%)
Query: 1 MLQCHPHPGDFSDKSRPL-YCYYFMGLQRKQGPF-NEGEQFDIRLAIEKFKHTINMY 55
MLQCHP+P +++D S+P + +FMGLQRK+G EG+QFDIR +++F+ I MY
Sbjct: 417 MLQCHPYPHEYADTSKPCAHSAFFMGLQRKEGVRGQEGQQFDIRGTVDEFRREIIMY 473
>Medtr3g110375.3 | poly(A) polymerase-like protein | HC |
chr3:51561695-51555466 | 20130731
Length = 719
Score = 64.7 bits (156), Expect = 2e-11, Method: Composition-based stats.
Identities = 29/57 (50%), Positives = 42/57 (73%), Gaps = 2/57 (3%)
Query: 1 MLQCHPHPGDFSDKSRPL-YCYYFMGLQRKQGPF-NEGEQFDIRLAIEKFKHTINMY 55
MLQCHP+P +++D S+P + +FMGLQRK+G EG+QFDIR +++F+ I MY
Sbjct: 417 MLQCHPYPHEYADTSKPCAHSAFFMGLQRKEGVRGQEGQQFDIRGTVDEFRREIIMY 473
>Medtr3g110375.4 | poly(A) polymerase-like protein | HC |
chr3:51561695-51555466 | 20130731
Length = 719
Score = 64.7 bits (156), Expect = 2e-11, Method: Composition-based stats.
Identities = 29/57 (50%), Positives = 42/57 (73%), Gaps = 2/57 (3%)
Query: 1 MLQCHPHPGDFSDKSRPL-YCYYFMGLQRKQGPF-NEGEQFDIRLAIEKFKHTINMY 55
MLQCHP+P +++D S+P + +FMGLQRK+G EG+QFDIR +++F+ I MY
Sbjct: 417 MLQCHPYPHEYADTSKPCAHSAFFMGLQRKEGVRGQEGQQFDIRGTVDEFRREIIMY 473
>Medtr3g110375.9 | poly(A) polymerase-like protein | HC |
chr3:51561676-51555466 | 20130731
Length = 671
Score = 64.3 bits (155), Expect = 3e-11, Method: Composition-based stats.
Identities = 29/57 (50%), Positives = 42/57 (73%), Gaps = 2/57 (3%)
Query: 1 MLQCHPHPGDFSDKSRPL-YCYYFMGLQRKQGPF-NEGEQFDIRLAIEKFKHTINMY 55
MLQCHP+P +++D S+P + +FMGLQRK+G EG+QFDIR +++F+ I MY
Sbjct: 417 MLQCHPYPHEYADTSKPCAHSAFFMGLQRKEGVRGQEGQQFDIRGTVDEFRREIIMY 473
>Medtr3g110375.5 | poly(A) polymerase-like protein | HC |
chr3:51561695-51555466 | 20130731
Length = 671
Score = 64.3 bits (155), Expect = 3e-11, Method: Composition-based stats.
Identities = 29/57 (50%), Positives = 42/57 (73%), Gaps = 2/57 (3%)
Query: 1 MLQCHPHPGDFSDKSRPL-YCYYFMGLQRKQGPF-NEGEQFDIRLAIEKFKHTINMY 55
MLQCHP+P +++D S+P + +FMGLQRK+G EG+QFDIR +++F+ I MY
Sbjct: 417 MLQCHPYPHEYADTSKPCAHSAFFMGLQRKEGVRGQEGQQFDIRGTVDEFRREIIMY 473
>Medtr3g110375.6 | poly(A) polymerase-like protein | HC |
chr3:51561695-51555466 | 20130731
Length = 671
Score = 64.3 bits (155), Expect = 3e-11, Method: Composition-based stats.
Identities = 29/57 (50%), Positives = 42/57 (73%), Gaps = 2/57 (3%)
Query: 1 MLQCHPHPGDFSDKSRPL-YCYYFMGLQRKQGPF-NEGEQFDIRLAIEKFKHTINMY 55
MLQCHP+P +++D S+P + +FMGLQRK+G EG+QFDIR +++F+ I MY
Sbjct: 417 MLQCHPYPHEYADTSKPCAHSAFFMGLQRKEGVRGQEGQQFDIRGTVDEFRREIIMY 473
>Medtr3g110375.2 | poly(A) polymerase-like protein | HC |
chr3:51561695-51555466 | 20130731
Length = 671
Score = 64.3 bits (155), Expect = 3e-11, Method: Composition-based stats.
Identities = 29/57 (50%), Positives = 42/57 (73%), Gaps = 2/57 (3%)
Query: 1 MLQCHPHPGDFSDKSRPL-YCYYFMGLQRKQGPF-NEGEQFDIRLAIEKFKHTINMY 55
MLQCHP+P +++D S+P + +FMGLQRK+G EG+QFDIR +++F+ I MY
Sbjct: 417 MLQCHPYPHEYADTSKPCAHSAFFMGLQRKEGVRGQEGQQFDIRGTVDEFRREIIMY 473
>Medtr3g110375.8 | poly(A) polymerase-like protein | HC |
chr3:51561676-51555466 | 20130731
Length = 671
Score = 64.3 bits (155), Expect = 3e-11, Method: Composition-based stats.
Identities = 29/57 (50%), Positives = 42/57 (73%), Gaps = 2/57 (3%)
Query: 1 MLQCHPHPGDFSDKSRPL-YCYYFMGLQRKQGPF-NEGEQFDIRLAIEKFKHTINMY 55
MLQCHP+P +++D S+P + +FMGLQRK+G EG+QFDIR +++F+ I MY
Sbjct: 417 MLQCHPYPHEYADTSKPCAHSAFFMGLQRKEGVRGQEGQQFDIRGTVDEFRREIIMY 473