Miyakogusa Predicted Gene

Lj0g3v0113489.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0113489.1 Non Characterized Hit- tr|I3T039|I3T039_MEDTR
Uncharacterized protein OS=Medicago truncatula PE=2
SV,83.59,0,SUBFAMILY NOT NAMED,NULL; 5-FORMYLTETRAHYDROFOLATE
CYCLO-LIGASE-RELATED,NULL; no description,5-formy,CUFF.6599.1
         (360 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g037530.1 | 5-formyltetrahydrofolate cyclo-ligase | HC | c...   514   e-146
Medtr6g037530.2 | 5-formyltetrahydrofolate cyclo-ligase | HC | c...   288   5e-78
Medtr6g037560.1 | 5-formyltetrahydrofolate cyclo-ligase | HC | c...    92   6e-19

>Medtr6g037530.1 | 5-formyltetrahydrofolate cyclo-ligase | HC |
           chr6:13365317-13359819 | 20130731
          Length = 345

 Score =  514 bits (1324), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 246/274 (89%), Positives = 259/274 (94%)

Query: 87  SSLRDDPKAWKWVIRKRIWDAMEAQNFAQNPRPVHHRIPNFVGANAAAEKMRGLDVFQVA 146
           SS++DDPKAWKWVIRKRIWD ME  NFAQNPRPVHHRIPNFVGA+ AA+KMR LDVF+ A
Sbjct: 72  SSMQDDPKAWKWVIRKRIWDLMEGNNFAQNPRPVHHRIPNFVGASLAADKMRALDVFRDA 131

Query: 147 QCVKVNPDSPQKQVRFLTLSDGKKLLTPQPRLRTGFFSVLESDKLSIGTIKEACTSVGVA 206
           QCVKVNPDSPQK VRFLTLSDGKKLLTPQPRLRTGFFSV+ES+ L+ GTIKEACTSVGVA
Sbjct: 132 QCVKVNPDSPQKPVRFLTLSDGKKLLTPQPRLRTGFFSVIESNMLTSGTIKEACTSVGVA 191

Query: 207 KHGRPIGLDEKIKVDLIVIGSVAVDPRTGARLGKGEGFAELEYGMLRYMGAIDDSTQVVT 266
           K+GRPIGLDEKIKVDLIVIGSVAVDP TGARLGKGEGFAELEYGMLRYMGAIDDST VVT
Sbjct: 192 KYGRPIGLDEKIKVDLIVIGSVAVDPNTGARLGKGEGFAELEYGMLRYMGAIDDSTLVVT 251

Query: 267 LVHDCQLVDDIPVEKLLIHDVPVDIICTPTQVIFTRTSIPKPQGIYWDKLSPEKLGQVRI 326
            VHDCQLVDDIPVEKLLIHDVPVDIICTPTQVIFT TSIPKPQGIYWDKLSPEKLGQ+RI
Sbjct: 252 SVHDCQLVDDIPVEKLLIHDVPVDIICTPTQVIFTNTSIPKPQGIYWDKLSPEKLGQIRI 311

Query: 327 LRELKKRIERETGQKLPTGPSEKLPPTAQRSRRG 360
           LRELK+RIE E G+KLPTGPSEKLPPTAQR+RRG
Sbjct: 312 LRELKRRIELEIGKKLPTGPSEKLPPTAQRNRRG 345


>Medtr6g037530.2 | 5-formyltetrahydrofolate cyclo-ligase | HC |
           chr6:13365315-13359819 | 20130731
          Length = 253

 Score =  288 bits (738), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 137/156 (87%), Positives = 146/156 (93%)

Query: 87  SSLRDDPKAWKWVIRKRIWDAMEAQNFAQNPRPVHHRIPNFVGANAAAEKMRGLDVFQVA 146
           SS++DDPKAWKWVIRKRIWD ME  NFAQNPRPVHHRIPNFVGA+ AA+KMR LDVF+ A
Sbjct: 72  SSMQDDPKAWKWVIRKRIWDLMEGNNFAQNPRPVHHRIPNFVGASLAADKMRALDVFRDA 131

Query: 147 QCVKVNPDSPQKQVRFLTLSDGKKLLTPQPRLRTGFFSVLESDKLSIGTIKEACTSVGVA 206
           QCVKVNPDSPQK VRFLTLSDGKKLLTPQPRLRTGFFSV+ES+ L+ GTIKEACTSVGVA
Sbjct: 132 QCVKVNPDSPQKPVRFLTLSDGKKLLTPQPRLRTGFFSVIESNMLTSGTIKEACTSVGVA 191

Query: 207 KHGRPIGLDEKIKVDLIVIGSVAVDPRTGARLGKGE 242
           K+GRPIGLDEKIKVDLIVIGSVAVDP TGARLGKGE
Sbjct: 192 KYGRPIGLDEKIKVDLIVIGSVAVDPNTGARLGKGE 227


>Medtr6g037560.1 | 5-formyltetrahydrofolate cyclo-ligase | HC |
           chr6:13378797-13377956 | 20130731
          Length = 82

 Score = 92.4 bits (228), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 42/56 (75%), Positives = 52/56 (92%), Gaps = 1/56 (1%)

Query: 187 ESDKLSIGTIKEACTSVGVAKHGRPIGLDEKIKVDLIVIGSVAVDPRTGARLGKGE 242
           E D+ ++GTIKEACT VG+AK+GRP+GLDEK+K+DLIVIGSVA+DP TGA+LGKGE
Sbjct: 26  EEDE-AMGTIKEACTHVGIAKYGRPVGLDEKMKIDLIVIGSVAIDPTTGAQLGKGE 80