Miyakogusa Predicted Gene
- Lj0g3v0113419.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0113419.1 Non Characterized Hit- tr|K3YRZ9|K3YRZ9_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si017043,42.86,4e-19,seg,NULL; NHL REPEAT-CONTAINING PROTEIN,NULL;
FAMILY NOT NAMED,NULL; no description,Six-bladed beta-,CUFF.6592.1
(154 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr6g007720.1 | NHL repeat protein | HC | chr6:1850293-1854343... 219 9e-58
Medtr5g034750.1 | NHL repeat protein | HC | chr5:15072581-150770... 189 9e-49
Medtr8g063760.1 | NHL repeat protein | HC | chr8:26718504-267142... 186 8e-48
Medtr2g075860.1 | NHL repeat protein | HC | chr2:31740677-317353... 110 6e-25
Medtr5g034550.1 | NHL repeat protein | HC | chr5:15003202-150038... 74 6e-14
Medtr8g063700.1 | plant/T23E23-13 protein, putative | HC | chr8:... 63 1e-10
Medtr8g058630.1 | NHL repeat protein | HC | chr8:20081350-200803... 49 1e-06
>Medtr6g007720.1 | NHL repeat protein | HC | chr6:1850293-1854343 |
20130731
Length = 562
Score = 219 bits (557), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 109/158 (68%), Positives = 124/158 (78%), Gaps = 4/158 (2%)
Query: 1 MSRSCYVLVFXXXXXX-XXXXXXXXXXXXKIVTGVVSNVVSALVKWLWSLKSTAK---PV 56
M+R C++L F KIVTGVVSNVVS+L+KW+WSLKS K PV
Sbjct: 1 MTRKCFMLFFAFIVLLGLLSPTSATPPPAKIVTGVVSNVVSSLLKWIWSLKSKPKVKVPV 60
Query: 57 QHGRSMMKFESGYNVETIFDGSKLGFEPHSVEVSPDGEFLVLDSENSNIYKIPSPISRYS 116
QH RSM+KFESGYNVETIFDGSKLG EPHS+E+S DGE+LVLDSENSNIYKI SP+SRYS
Sbjct: 61 QHSRSMVKFESGYNVETIFDGSKLGIEPHSIEISQDGEYLVLDSENSNIYKISSPMSRYS 120
Query: 117 RPKLLAGSPEGYIGHIDGRLREARMNHPKGITVDGRGN 154
+PKLLAGS EGYIGHIDGR R+AR+NHPKG+TVD GN
Sbjct: 121 KPKLLAGSSEGYIGHIDGRSRDARLNHPKGLTVDDSGN 158
>Medtr5g034750.1 | NHL repeat protein | HC | chr5:15072581-15077047
| 20130731
Length = 560
Score = 189 bits (480), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 91/126 (72%), Positives = 104/126 (82%)
Query: 29 KIVTGVVSNVVSALVKWLWSLKSTAKPVQHGRSMMKFESGYNVETIFDGSKLGFEPHSVE 88
KIV G +SN V A KW++SLK T K G+SMMKFESGYNVET+FDGSKLG EP++VE
Sbjct: 33 KIVNGFLSNAVPAFTKWVFSLKPTTKKAIAGKSMMKFESGYNVETVFDGSKLGIEPYAVE 92
Query: 89 VSPDGEFLVLDSENSNIYKIPSPISRYSRPKLLAGSPEGYIGHIDGRLREARMNHPKGIT 148
V +GE L+LDSENSNIYKI S +S YSRPKL+AGS EGY GH+DG+LREARMNHPKGIT
Sbjct: 93 VLSNGELLILDSENSNIYKISSSLSLYSRPKLVAGSAEGYSGHVDGKLREARMNHPKGIT 152
Query: 149 VDGRGN 154
VD RGN
Sbjct: 153 VDDRGN 158
>Medtr8g063760.1 | NHL repeat protein | HC | chr8:26718504-26714203
| 20130731
Length = 521
Score = 186 bits (472), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 88/126 (69%), Positives = 104/126 (82%)
Query: 29 KIVTGVVSNVVSALVKWLWSLKSTAKPVQHGRSMMKFESGYNVETIFDGSKLGFEPHSVE 88
K+V+G +SN V A KW+WSLK+T K +SMMKFESGYNVET+FDGSKLG EP++VE
Sbjct: 36 KLVSGFLSNAVPAFSKWVWSLKATTKTGVLSKSMMKFESGYNVETVFDGSKLGIEPYAVE 95
Query: 89 VSPDGEFLVLDSENSNIYKIPSPISRYSRPKLLAGSPEGYIGHIDGRLREARMNHPKGIT 148
V +GE L+LDS NSN+Y+I S +S YSRPKL+AGS EGY GH+DGRLREARMNHPKGIT
Sbjct: 96 VLHNGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGRLREARMNHPKGIT 155
Query: 149 VDGRGN 154
VD RGN
Sbjct: 156 VDDRGN 161
>Medtr2g075860.1 | NHL repeat protein | HC | chr2:31740677-31735332
| 20130731
Length = 493
Score = 110 bits (274), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 54/117 (46%), Positives = 82/117 (70%), Gaps = 3/117 (2%)
Query: 39 VSALVKWLWSLKSTAKPVQHGRSMMKFESGYNVETIFDGSKLGFEPHSVEVSP-DGEFLV 97
+S+L+KW S +T K ++++FE+GY VET+ +G+++G P+ + VS DGE
Sbjct: 41 LSSLIKWTRS--ATTKTPHSDGNVLQFENGYVVETVVEGNEIGVIPYRIRVSEEDGELFA 98
Query: 98 LDSENSNIYKIPSPISRYSRPKLLAGSPEGYIGHIDGRLREARMNHPKGITVDGRGN 154
+D NSNI +I P+S+YSR +L+AGS +GY H+DG+ +AR NHPKGIT+D +GN
Sbjct: 99 VDEINSNIVRITPPLSQYSRGRLVAGSFQGYTDHVDGKPSDARFNHPKGITMDDKGN 155
>Medtr5g034550.1 | NHL repeat protein | HC | chr5:15003202-15003898
| 20130731
Length = 154
Score = 73.9 bits (180), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 32/40 (80%), Positives = 35/40 (87%)
Query: 115 YSRPKLLAGSPEGYIGHIDGRLREARMNHPKGITVDGRGN 154
Y RPKL+AGS EGY GH+D +LREARMNHPKGITVD RGN
Sbjct: 2 YGRPKLVAGSAEGYSGHVDEKLREARMNHPKGITVDDRGN 41
>Medtr8g063700.1 | plant/T23E23-13 protein, putative | HC |
chr8:26697994-26701680 | 20130731
Length = 384
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Query: 66 ESGYNVETIFDGSKLGFEPHSVEVSP-DGEFLVLDSENSNIYKIPSPISRYSRPKLLAGS 124
E GY + TI DG KL P S+ P + +VLDS NS Y + PIS+ S K +G+
Sbjct: 31 EEGYTITTILDGHKLHINPFSILQRPISSDLIVLDSTNSTFYTVQLPISQESVFKRFSGN 90
Query: 125 PEGYIGHIDGRLREARMNHPKGITVDGRGN 154
G G+ DG + AR + P+ VD RGN
Sbjct: 91 --GSPGYEDGDVGLARFDKPRSFAVDFRGN 118
>Medtr8g058630.1 | NHL repeat protein | HC | chr8:20081350-20080362
| 20130731
Length = 150
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 30/39 (76%)
Query: 116 SRPKLLAGSPEGYIGHIDGRLREARMNHPKGITVDGRGN 154
SR +L+AGS G GH+DG+L +AR ++PKGI +D +GN
Sbjct: 13 SRERLVAGSFLGRTGHVDGKLSDARFHYPKGIALDDKGN 51