Miyakogusa Predicted Gene

Lj0g3v0112699.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0112699.1 Non Characterized Hit- tr|D7SP48|D7SP48_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,50.97,0,seg,NULL; SUBFAMILY NOT NAMED,NULL; ZINC FINGER CW-TYPE
COILED-COIL DOMAIN PROTEIN 3.,NULL; coiled-c,CUFF.6555.1
         (256 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g076590.1 | histidine kinase-, DNA gyrase B | HC | chr8:32...   320   7e-88
Medtr3g077540.2 | histidine kinase-, DNA gyrase B | HC | chr3:34...   159   3e-39
Medtr3g077540.1 | histidine kinase-, DNA gyrase B | HC | chr3:34...   159   3e-39
Medtr8g096410.4 | histidine kinase-, DNA gyrase B, putative | HC...   148   5e-36
Medtr8g096410.2 | histidine kinase-, DNA gyrase B, putative | HC...   148   6e-36
Medtr8g096410.1 | histidine kinase-, DNA gyrase B, putative | HC...   147   7e-36
Medtr8g096410.3 | histidine kinase-, DNA gyrase B, putative | HC...   147   7e-36
Medtr4g105530.1 | histidine kinase-, DNA gyrase B | HC | chr4:43...   128   6e-30

>Medtr8g076590.1 | histidine kinase-, DNA gyrase B | HC |
           chr8:32453780-32471662 | 20130731
          Length = 512

 Score =  320 bits (821), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 166/283 (58%), Positives = 202/283 (71%), Gaps = 31/283 (10%)

Query: 1   MLYLRKFSNFKIILRGKLVDQFNIADELIHSEVIRYRPQQAVASNEAMVDTTIGFIKEAP 60
           +LYLRKFSNFKIILRGK VD F+I DELIHSEV+RY+PQ AV  NEA V+TT+GFIKEAP
Sbjct: 232 LLYLRKFSNFKIILRGKPVDHFDINDELIHSEVVRYKPQMAVM-NEATVETTVGFIKEAP 290

Query: 61  NLNVAGFNVYHKNRLIKPFWKVNPDXXXXXXXXXXXLEANFIEPAHDKQDFERSLLFVRL 120
            LNVAGFNVYHKNRLIKPFWKV+ D           LEANFIEPAHDKQDFERSLLF+RL
Sbjct: 291 RLNVAGFNVYHKNRLIKPFWKVHADGSSKGNYVVGVLEANFIEPAHDKQDFERSLLFIRL 350

Query: 121 ETKLKQMVNDYWKGHCHLVGYQPLNFKSQNVQKETQIRQSAGRSTNTQN----------- 169
           E KLKQ+V DYWK HCHLVG+QP NF+SQ  QKE +IRQSAG  TN++N           
Sbjct: 351 EGKLKQIVYDYWKDHCHLVGFQPTNFRSQIGQKEARIRQSAGHLTNSRNEILADPHDICV 410

Query: 170 --VHQDDLYIDQTIAG---------------ATSTGTPGPVAVDKNKICEENIQLFMKCE 212
              HQ  + + Q   G                TS+G    V++D   IC+ENI+LF +CE
Sbjct: 411 AAEHQQIVNLHQPNEGLRATGKQCLTHEQGQGTSSGASPSVSID--AICDENIKLFTRCE 468

Query: 213 EFRKKETELKQTVENLEEDLKDLQRKCRQLSAFLVAKKKQKSS 255
           E+R+KETEL++TV++LEE+LK+ Q KC  +S+ + AK+KQ ++
Sbjct: 469 EYRQKETELRKTVKHLEEELKEYQSKCAFVSSQIEAKRKQNNA 511


>Medtr3g077540.2 | histidine kinase-, DNA gyrase B | HC |
           chr3:34846655-34833326 | 20130731
          Length = 643

 Score =  159 bits (401), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 98/267 (36%), Positives = 141/267 (52%), Gaps = 28/267 (10%)

Query: 1   MLYLRKFSNFKIILRGKLVDQFNIADELIHSEVIRYRPQQAVASNEAMVDTTIGFIKEAP 60
           +LYLR    F+IILRG+ V   +IAD+L   E ++Y PQ    + E +   TIGF+KEAP
Sbjct: 376 ILYLRLPQTFQIILRGQAVKPHSIADDLKLVEFVKYTPQCGGGAVEELF-VTIGFLKEAP 434

Query: 61  NLNVAGFNVYHKNRLIKPFWKVNPDXXXXXXXXXXXLEANFIEPAHDKQDFERSLLFVRL 120
           ++N+ GFNVYHK+RLI PFW V              ++A+F+EP HDKQDFE++ LF +L
Sbjct: 435 HVNIHGFNVYHKHRLILPFWHVVRYQDSRGRGVVGIMQADFVEPTHDKQDFEKTSLFQKL 494

Query: 121 ETKLKQMVNDYWKGHCHLVGYQPLNFKSQNVQKETQIRQSAG---RSTNTQNVHQDDLYI 177
           E +LK M ++YW  HC L+GY+P        + +T + QS     +S    N  + D  I
Sbjct: 495 EARLKSMTSEYWDTHCRLIGYRPA------AKPQTPVAQSHPPLQKSLEYHNKRKTDELI 548

Query: 178 D----------QTIAGAT------STGTPGPVAVDKNKIC--EENIQLFMKCEEFRKKET 219
           D          + + G         T TP    V+   I   +EN +L   C EF K+E 
Sbjct: 549 DLQNRKKHASEECVTGTGFSQKKQITTTPADQVVNPETITLMQENNKLHANCLEFEKREE 608

Query: 220 ELKQTVENLEEDLKDLQRKCRQLSAFL 246
           EL   V  L   +++ + +  +L A L
Sbjct: 609 ELNLKVTQLRSKIEEARHEYDRLLAEL 635


>Medtr3g077540.1 | histidine kinase-, DNA gyrase B | HC |
           chr3:34846699-34833381 | 20130731
          Length = 643

 Score =  159 bits (401), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 98/267 (36%), Positives = 141/267 (52%), Gaps = 28/267 (10%)

Query: 1   MLYLRKFSNFKIILRGKLVDQFNIADELIHSEVIRYRPQQAVASNEAMVDTTIGFIKEAP 60
           +LYLR    F+IILRG+ V   +IAD+L   E ++Y PQ    + E +   TIGF+KEAP
Sbjct: 376 ILYLRLPQTFQIILRGQAVKPHSIADDLKLVEFVKYTPQCGGGAVEELF-VTIGFLKEAP 434

Query: 61  NLNVAGFNVYHKNRLIKPFWKVNPDXXXXXXXXXXXLEANFIEPAHDKQDFERSLLFVRL 120
           ++N+ GFNVYHK+RLI PFW V              ++A+F+EP HDKQDFE++ LF +L
Sbjct: 435 HVNIHGFNVYHKHRLILPFWHVVRYQDSRGRGVVGIMQADFVEPTHDKQDFEKTSLFQKL 494

Query: 121 ETKLKQMVNDYWKGHCHLVGYQPLNFKSQNVQKETQIRQSAG---RSTNTQNVHQDDLYI 177
           E +LK M ++YW  HC L+GY+P        + +T + QS     +S    N  + D  I
Sbjct: 495 EARLKSMTSEYWDTHCRLIGYRPA------AKPQTPVAQSHPPLQKSLEYHNKRKTDELI 548

Query: 178 D----------QTIAGAT------STGTPGPVAVDKNKIC--EENIQLFMKCEEFRKKET 219
           D          + + G         T TP    V+   I   +EN +L   C EF K+E 
Sbjct: 549 DLQNRKKHASEECVTGTGFSQKKQITTTPADQVVNPETITLMQENNKLHANCLEFEKREE 608

Query: 220 ELKQTVENLEEDLKDLQRKCRQLSAFL 246
           EL   V  L   +++ + +  +L A L
Sbjct: 609 ELNLKVTQLRSKIEEARHEYDRLLAEL 635


>Medtr8g096410.4 | histidine kinase-, DNA gyrase B, putative | HC |
           chr8:40447933-40438223 | 20130731
          Length = 798

 Score =  148 bits (373), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 76/167 (45%), Positives = 104/167 (62%), Gaps = 6/167 (3%)

Query: 1   MLYLRKFSNFKIILRGKLVDQFNIADELIHSEVIRYRPQQAVAS----NEAMVDT-TIGF 55
           +LYLR    F+IILRGK V   NI +++++S+ + YRPQ  VA     +  MV T TIGF
Sbjct: 407 ILYLRIPQGFRIILRGKDVLHHNIVNDMMYSQEVTYRPQSGVADGLLKDSNMVATVTIGF 466

Query: 56  IKEAPN-LNVAGFNVYHKNRLIKPFWKVNPDXXXXXXXXXXXLEANFIEPAHDKQDFERS 114
           +K+A + ++V+GFNVYHKNRLIKPFW++              LEANF+EPAHDKQ FER+
Sbjct: 467 VKDAKHHIDVSGFNVYHKNRLIKPFWRIWNPAGSGGRGVIGVLEANFVEPAHDKQGFERT 526

Query: 115 LLFVRLETKLKQMVNDYWKGHCHLVGYQPLNFKSQNVQKETQIRQSA 161
           L+  RLE +L QM   YW  +C  +GY     + QN      + +S+
Sbjct: 527 LVLSRLEQRLIQMQKTYWGANCDKIGYTSHRNRKQNEASPDSVPESS 573


>Medtr8g096410.2 | histidine kinase-, DNA gyrase B, putative | HC |
           chr8:40447933-40438223 | 20130731
          Length = 802

 Score =  148 bits (373), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 75/156 (48%), Positives = 100/156 (64%), Gaps = 6/156 (3%)

Query: 1   MLYLRKFSNFKIILRGKLVDQFNIADELIHSEVIRYRPQQAVAS----NEAMVDT-TIGF 55
           +LYLR    F+IILRGK V   NI +++++S+ + YRPQ  VA     +  MV T TIGF
Sbjct: 407 ILYLRIPQGFRIILRGKDVLHHNIVNDMMYSQEVTYRPQSGVADGLLKDSNMVATVTIGF 466

Query: 56  IKEAPN-LNVAGFNVYHKNRLIKPFWKVNPDXXXXXXXXXXXLEANFIEPAHDKQDFERS 114
           +K+A + ++V+GFNVYHKNRLIKPFW++              LEANF+EPAHDKQ FER+
Sbjct: 467 VKDAKHHIDVSGFNVYHKNRLIKPFWRIWNPAGSGGRGVIGVLEANFVEPAHDKQGFERT 526

Query: 115 LLFVRLETKLKQMVNDYWKGHCHLVGYQPLNFKSQN 150
           L+  RLE +L QM   YW  +C  +GY     + QN
Sbjct: 527 LVLSRLEQRLIQMQKTYWGANCDKIGYTSHRNRKQN 562


>Medtr8g096410.1 | histidine kinase-, DNA gyrase B, putative | HC |
           chr8:40447933-40438223 | 20130731
          Length = 804

 Score =  147 bits (372), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 75/156 (48%), Positives = 100/156 (64%), Gaps = 6/156 (3%)

Query: 1   MLYLRKFSNFKIILRGKLVDQFNIADELIHSEVIRYRPQQAVAS----NEAMVDT-TIGF 55
           +LYLR    F+IILRGK V   NI +++++S+ + YRPQ  VA     +  MV T TIGF
Sbjct: 407 ILYLRIPQGFRIILRGKDVLHHNIVNDMMYSQEVTYRPQSGVADGLLKDSNMVATVTIGF 466

Query: 56  IKEAPN-LNVAGFNVYHKNRLIKPFWKVNPDXXXXXXXXXXXLEANFIEPAHDKQDFERS 114
           +K+A + ++V+GFNVYHKNRLIKPFW++              LEANF+EPAHDKQ FER+
Sbjct: 467 VKDAKHHIDVSGFNVYHKNRLIKPFWRIWNPAGSGGRGVIGVLEANFVEPAHDKQGFERT 526

Query: 115 LLFVRLETKLKQMVNDYWKGHCHLVGYQPLNFKSQN 150
           L+  RLE +L QM   YW  +C  +GY     + QN
Sbjct: 527 LVLSRLEQRLIQMQKTYWGANCDKIGYTSHRNRKQN 562


>Medtr8g096410.3 | histidine kinase-, DNA gyrase B, putative | HC |
           chr8:40447933-40438223 | 20130731
          Length = 827

 Score =  147 bits (372), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 75/156 (48%), Positives = 100/156 (64%), Gaps = 6/156 (3%)

Query: 1   MLYLRKFSNFKIILRGKLVDQFNIADELIHSEVIRYRPQQAVAS----NEAMVDT-TIGF 55
           +LYLR    F+IILRGK V   NI +++++S+ + YRPQ  VA     +  MV T TIGF
Sbjct: 407 ILYLRIPQGFRIILRGKDVLHHNIVNDMMYSQEVTYRPQSGVADGLLKDSNMVATVTIGF 466

Query: 56  IKEAPN-LNVAGFNVYHKNRLIKPFWKVNPDXXXXXXXXXXXLEANFIEPAHDKQDFERS 114
           +K+A + ++V+GFNVYHKNRLIKPFW++              LEANF+EPAHDKQ FER+
Sbjct: 467 VKDAKHHIDVSGFNVYHKNRLIKPFWRIWNPAGSGGRGVIGVLEANFVEPAHDKQGFERT 526

Query: 115 LLFVRLETKLKQMVNDYWKGHCHLVGYQPLNFKSQN 150
           L+  RLE +L QM   YW  +C  +GY     + QN
Sbjct: 527 LVLSRLEQRLIQMQKTYWGANCDKIGYTSHRNRKQN 562


>Medtr4g105530.1 | histidine kinase-, DNA gyrase B | HC |
           chr4:43806717-43795114 | 20130731
          Length = 654

 Score =  128 bits (321), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 89/275 (32%), Positives = 133/275 (48%), Gaps = 35/275 (12%)

Query: 1   MLYL--RKFSNFKIILRGKLVDQFNIADELIHSEVIRYRPQQAVASNEAMVDTTIGFIKE 58
           +LYL  R  ++F+IILRG++V   NIAD+L     ++YRP       E  +  TIGF+KE
Sbjct: 371 ILYLWDRVPNSFRIILRGQVVKFRNIADDLTDHAFVKYRPHGG--GLEEAIFVTIGFLKE 428

Query: 59  APNLNVAGFNVYHKNRLIKPFWKVNPDXXXXXXXXXXXLEANFIEPAHDKQDFERSLLFV 118
           AP++++ GFNVYHKNRLI PFW V              L+A+ ++P H+KQDFER+  F 
Sbjct: 429 APDVDIHGFNVYHKNRLILPFWPVVSFKGNRGRGIVGVLQADNVQPTHNKQDFERTSPFQ 488

Query: 119 RLETKLKQMVNDYWKGHCHLVGYQ------PLNFKSQNVQKETQIRQSAGRS-------- 164
           +LE +LK M  +YW    H +GYQ      P+   + +++K     +             
Sbjct: 489 KLELRLKDMTWEYWDRFSHKIGYQKRKRRNPVGLPNPSMKKPLVTEKPVALDNCSSPVPI 548

Query: 165 TNTQNVHQDDLYIDQTIAGAT---------------STGTPGPVAVDKN--KICEENIQL 207
           +N Q+  +      +   G T               +T +P    VD+    + E N QL
Sbjct: 549 SNAQDGSEQTSLTKRKTRGFTDHHEMKRQAVEKNVQTTASPADQMVDQEIVNLLEFNKQL 608

Query: 208 FMKCEEFRKKETELKQTVENLEEDLKDLQRKCRQL 242
              C  F K E EL   V  L   L++ + +  +L
Sbjct: 609 NADCFAFEKMEEELNLEVTQLRSRLEEAKLEYNRL 643