Miyakogusa Predicted Gene

Lj0g3v0112359.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0112359.1 tr|A9RFZ1|A9RFZ1_PHYPA Predicted protein
(Fragment) OS=Physcomitrella patens subsp. patens
GN=PHYPAD,67.5,5e-18,SUBFAMILY NOT NAMED,NULL; HEMOLYSIN-RELATED,NULL;
DUF21,Domain of unknown function DUF21; seg,NULL,CUFF.6515.1
         (229 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g094740.1 | CBS domain protein/transporter associated doma...   186   2e-47

>Medtr5g094740.1 | CBS domain protein/transporter associated domain
           protein | HC | chr5:41403459-41394774 | 20130731
          Length = 821

 Score =  186 bits (472), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 110/239 (46%), Positives = 143/239 (59%), Gaps = 20/239 (8%)

Query: 1   MALQSLVLGQPVF---------IFVSRVHRMPMKALAKNSGYPFPLVAKCVEQ-PCNFGG 50
           M L+S  LG  VF         +  +R  RMPMK L  N  YPFP+V+ CV    C    
Sbjct: 1   MTLESWALGHRVFNSGSKLFYPVHENRTKRMPMKVLGTNGRYPFPIVSNCVGPFTCKSFH 60

Query: 51  VSSILGSGSDFKPFGRCDMRC-LVTSGKDLSGTKSSNDVSEEDMKFPKFVGELVKKGIVL 109
           +SS    G + K  G   ++   + SG D    ++  DVS+ ++KF   V  LVK+GI+L
Sbjct: 61  LSSY---GKNLKLVGGASLKVKCIGSGSDSDCLRAKTDVSDANLKFINEV--LVKRGIIL 115

Query: 110 AATVCGVLMFGCERAFAMEGLVS----VMEQSKVFFRNAWPKVLPVLQIFKEQGXXXXXX 165
           AA VCGVL+FGC +  A EG+V+    V+ +  +  ++ WP VL +L++FKEQG      
Sbjct: 116 AAAVCGVLVFGCPKVLATEGVVNAGYGVIGKCILLLKSTWPTVLQILRLFKEQGLLLALL 175

Query: 166 XXXXXXXXMAETSITTLWPWKVRELANNDSENGVFKLLRSDVTRFLTTILIGTTYSPLA 224
                   +AETSITTLWPWKVRELA  +SENGVF+LLRSDVTRFLTTILIGTT   +A
Sbjct: 176 LGLSAFFSLAETSITTLWPWKVRELAEKESENGVFRLLRSDVTRFLTTILIGTTVVNIA 234