Miyakogusa Predicted Gene

Lj0g3v0112259.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0112259.2 tr|G7JBZ6|G7JBZ6_MEDTR HORMA domain-containing
protein OS=Medicago truncatula GN=MTR_3g085380 PE=4
S,87.35,0,HORMA,DNA-binding HORMA; The spindle assembly checkpoint
protein mad2,DNA-binding HORMA; no descript,CUFF.6509.2
         (536 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g085380.1 | meiotic asynaptic mutant protein | HC | chr3:3...   625   e-179

>Medtr3g085380.1 | meiotic asynaptic mutant protein | HC |
           chr3:38585219-38580046 | 20130731
          Length = 613

 Score =  625 bits (1611), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 298/340 (87%), Positives = 318/340 (93%), Gaps = 5/340 (1%)

Query: 1   MVVAQKLKESEITEQHSLLLTRNLLRIAIFNISYIRGLFPEKYFNDKSVPALEMKIKKLM 60
           MVVAQKLKE+EITEQ SLLLTRNLLRIAIFNISYIRGLFPEKYFNDKSVPALEMKIKKL+
Sbjct: 1   MVVAQKLKEAEITEQDSLLLTRNLLRIAIFNISYIRGLFPEKYFNDKSVPALEMKIKKLL 60

Query: 61  PVDAESRRLIDWMEKGVYDALQKKYLKTLLFCVCEAVDGPMIEEYAFSFSYSASENEEVS 120
           PVDAESRRLIDWMEKGVYDALQKKYLKTLLFCVCEAVDGPMIEEYAFSFSYS SE +EVS
Sbjct: 61  PVDAESRRLIDWMEKGVYDALQKKYLKTLLFCVCEAVDGPMIEEYAFSFSYSDSEKQEVS 120

Query: 121 MNINRIGNEKQGGTFKHNSTADITPQQMRSSACKMIRTLVQLMRTLEKMPEERTILMKLL 180
           MNINR G++KQGG FK NST DITPQQMRSSACKMIRTLVQLMRTLEKMPEERTILMKLL
Sbjct: 121 MNINRTGSKKQGGAFKCNSTTDITPQQMRSSACKMIRTLVQLMRTLEKMPEERTILMKLL 180

Query: 181 YYDDVTPPDYEPPFFRGCTEEEAYHQWEKNPLKMEVGDVNSKHFVLALKVKSVLDPCEDD 240
           YYDDVTP DYEPPFFRGC+EEEA H W KNPLKMEVG+VNSKHFVLALKVKSVLDPCEDD
Sbjct: 181 YYDDVTPSDYEPPFFRGCSEEEANHPWVKNPLKMEVGNVNSKHFVLALKVKSVLDPCEDD 240

Query: 241 NEGMQDDISTGDDSMQRDEYYETDSEVDHS--QGDHYIVAPIEKQQAQEDNGVIDED-TQ 297
           NEG+QDD+S  DD MQ ++YY+TDSEVDH+  QGD YIVAPIEKQQ QEDNG IDED TQ
Sbjct: 241 NEGIQDDMS--DDEMQNNDYYDTDSEVDHTQGQGDQYIVAPIEKQQEQEDNGEIDEDNTQ 298

Query: 298 DPVEDEQQLLRVREWINCCHLDTIELTDVLSNFPDISVAL 337
           DPVEDEQQL+R++EW++CCHLDT++LTDVLSNFPDISV L
Sbjct: 299 DPVEDEQQLVRIKEWLSCCHLDTVDLTDVLSNFPDISVVL 338



 Score =  307 bits (786), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 156/217 (71%), Positives = 173/217 (79%), Gaps = 20/217 (9%)

Query: 336 ALYHALPMTYVSVAKLQGLLEGKVNQTAARKMIDKMIRDGFVEPKGNKRLGKRVIHSELT 395
           ALYH LPM YVSV KLQ   +G+++QTAARK+I+KM RDGFVEPKG+KRLGKRVIHSELT
Sbjct: 401 ALYHTLPMAYVSVTKLQSSFQGEISQTAARKIIEKMTRDGFVEPKGSKRLGKRVIHSELT 460

Query: 396 ERKFIEVQKTLTAAEAMDVDNCEPNK----------------STCGVLHSIGSDLTRMIV 439
           ERK++EVQ+ L AAEAMDVD+CEPN                 STCGVLHSIGSDLTRM V
Sbjct: 461 ERKYVEVQQALGAAEAMDVDHCEPNSKSKKAGYRMSGSNRDISTCGVLHSIGSDLTRMKV 520

Query: 440 TSDTNYSDFKSGHKTPKAKEPGSNPTSRTEPVTSRESFAQGKENSTANGNRIANHGDDEV 499
           TS+ N +D  SG K PKAKEPG+ PTSR  PV SRESFA GKENSTANGN IAN GD   
Sbjct: 521 TSELNDTDSMSGPKMPKAKEPGTTPTSR--PVASRESFAHGKENSTANGNGIANEGD--A 576

Query: 500 AETIICSRSSQDKRPRKTSAVKEPIHQNVKRQRSQAP 536
           A+TIICSRSSQDKRPRK SAVK+PIHQ+VKRQRSQAP
Sbjct: 577 ADTIICSRSSQDKRPRKASAVKDPIHQSVKRQRSQAP 613