Miyakogusa Predicted Gene

Lj0g3v0112089.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0112089.2 tr|D7M1V6|D7M1V6_ARALL Thioredoxin family protein
OS=Arabidopsis lyrata subsp. lyrata
GN=ARALYDRAFT_,60.47,4e-19,seg,NULL; GLUTAREDOXIN_2,Glutaredoxin;
GLUTAREDOXIN-3,NULL; GLUTAREDOXIN-RELATED PROTEIN,Monothiol
g,CUFF.6497.2
         (93 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g088905.1 | monothiol glutaredoxin-S17 protein | HC | chr4...   104   2e-23

>Medtr4g088905.1 | monothiol glutaredoxin-S17 protein | HC |
           chr4:35508224-35504762 | 20130731
          Length = 491

 Score =  104 bits (259), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 52/85 (61%), Positives = 58/85 (68%)

Query: 1   MHESGELHEFFKDHGIGTVGETKLTESGNAXXXXXXXXXXXXXXXXWLENLVNSSPVILF 60
           MHESGEL + FKDHGI TV ET +T+SGN                  L+ LVNS  V+LF
Sbjct: 242 MHESGELKDVFKDHGIDTVDETNITDSGNTKGGISKSTDLSTNLASRLDGLVNSGSVMLF 301

Query: 61  MKGKPDEPKCGFRRKVVEILQQENV 85
           MKGKPDEPKCGF RKVVEIL+QENV
Sbjct: 302 MKGKPDEPKCGFSRKVVEILRQENV 326



 Score = 60.1 bits (144), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 26/38 (68%), Positives = 33/38 (86%)

Query: 48  LENLVNSSPVILFMKGKPDEPKCGFRRKVVEILQQENV 85
           L+ LV+S PV+LFMKG P+EPKCGF RKVV+IL++E V
Sbjct: 160 LQELVDSHPVLLFMKGSPEEPKCGFSRKVVDILKEEKV 197



 Score = 52.8 bits (125), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 22/38 (57%), Positives = 29/38 (76%)

Query: 48  LENLVNSSPVILFMKGKPDEPKCGFRRKVVEILQQENV 85
           L+ L+ SSPV+LFMKG PD P+CGF  +VV  L++E V
Sbjct: 396 LKKLIASSPVMLFMKGTPDAPRCGFSSRVVNALREEGV 433