Miyakogusa Predicted Gene

Lj0g3v0111309.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0111309.1 Non Characterized Hit- tr|A2Q3V0|A2Q3V0_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,81.82,0.00000000002,SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL; seg,NULL; coiled-coil,NULL,CUFF.6438.1
         (337 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g007250.1 | vacuolar protein sorting-associated protein, p...   537   e-153
Medtr5g013780.1 | vacuolar protein sorting protein | HC | chr5:4...    56   5e-08

>Medtr2g007250.1 | vacuolar protein sorting-associated protein,
           putative | HC | chr2:875474-913892 | 20130731
          Length = 3509

 Score =  537 bits (1383), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 262/326 (80%), Positives = 282/326 (86%), Gaps = 3/326 (0%)

Query: 12  AQENKIVEIKGLEFYSSMFHS-TMDLVTMDNTGYSCSASNIRSEGNHYNSILAPCDVTLI 70
           AQ  KIVE+KGLE YSS+FHS TMDLV M+  G S SAS I SEG  YNSILAP DVTLI
Sbjct: 207 AQVKKIVEVKGLEMYSSLFHSSTMDLVIMNTMGNSYSASTIGSEGKQYNSILAPFDVTLI 266

Query: 71  LSANRSQKVDDNAPQYSLTAELSDLVISLDEVQLQQMFLVWDYVCTCRLREKYGRFRPWH 130
           LSANRSQK+DDNA QYS+TAELS LVISLDEVQLQQMFLVWDYVCTCRLREKYGRFRPWH
Sbjct: 267 LSANRSQKLDDNAAQYSVTAELSGLVISLDEVQLQQMFLVWDYVCTCRLREKYGRFRPWH 326

Query: 131 CPLPRKCEGWQIFWWHYAQESVLSDVRKKLKKTSWRYLGDRLIFRRNYMNLYKTKLDFLR 190
           CPLP K EGWQI WWHYAQE+VLSDVRKKLKKTSW+Y GDRL +RR YMNLYK KLDFL+
Sbjct: 327 CPLPTKQEGWQILWWHYAQEAVLSDVRKKLKKTSWKYFGDRLSYRRKYMNLYKIKLDFLQ 386

Query: 191 QEQPVDDNVLRDLEKMEKESDLDDILNYRSAAEYEMRELLTRCXXXXXXXGRIQTDIHTD 250
           QEQPVDD+VL+DLE+MEKE+DLDDILNYRSAAE+EM+E L+R        GRI +DI T+
Sbjct: 387 QEQPVDDDVLQDLEQMEKETDLDDILNYRSAAEFEMQEYLSR--YSTPSNGRIVSDISTE 444

Query: 251 NHCNDEHTVKSRGWLNWLSRGMLGAGGTDDSSQFSGVVSFDVKDISEATEFHPLVSSSVD 310
              NDEH VKSRGWLNWLSRGMLGAGGTDDSSQFSGVVS+DVKDISEATEFHPLVSSSVD
Sbjct: 445 KSGNDEHNVKSRGWLNWLSRGMLGAGGTDDSSQFSGVVSYDVKDISEATEFHPLVSSSVD 504

Query: 311 FATKHELCIFASKIEIRQISATLYRK 336
            ATKHELCIF S IEI QIS TL+ K
Sbjct: 505 VATKHELCIFESNIEIHQISVTLFSK 530


>Medtr5g013780.1 | vacuolar protein sorting protein | HC |
           chr5:4444545-4498541 | 20130731
          Length = 4324

 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 66/147 (44%), Gaps = 7/147 (4%)

Query: 76  SQKVDDNAPQYSLTAELSDLVISLDEVQLQQMFLVWDYVCTCRLREKYGRFRPWHCPLPR 135
           S+  D   P  +    L D+ ISL +     M  + D   T   R KY  FRP    +P 
Sbjct: 272 SEAADSKQPLQTAVVNLDDVTISLSKDGYSDMMKLADNFATFNQRLKYAHFRPL---VPV 328

Query: 136 KCEGWQIFWWHYAQESVLSDVRKKLKKTSWRYLGDRLIFRRNYMNLYKTKLDFLRQEQPV 195
             +     WW YA  +V   ++K   K SW  +      ++ Y++LY + L     +  +
Sbjct: 329 NSDSRS--WWKYAYRAVSDQMKKASGKMSWEQVLRYTRLQKRYISLYASLLKSDPSQVTI 386

Query: 196 DDNVLRDLEKMEKESDLDDILNYRSAA 222
             N  R++E +++E D++ IL +R  A
Sbjct: 387 SGN--REIEDLDRELDIELILQWRMLA 411