Miyakogusa Predicted Gene
- Lj0g3v0110789.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0110789.1 Non Characterized Hit- tr|K3XMR4|K3XMR4_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si003187,85.62,0,seg,NULL; HISTONE_H2A,Histone H2A; Histone,Histone
core; HISTONE H2A,NULL; Histone 2A,Histone H2A; n,CUFF.6414.1
(152 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr2g096570.1 | core histone H2A/H2B/H3/H4 | HC | chr2:4124501... 188 2e-48
Medtr4g063280.1 | histone H2A 6 | HC | chr4:23448360-23447582 | ... 187 4e-48
Medtr2g096610.1 | core histone H2A/H2B/H3/H4 | HC | chr2:4125742... 179 8e-46
Medtr4g063410.1 | core histone H2A/H2B/H3/H4 | HC | chr4:2342389... 178 2e-45
Medtr4g064967.1 | core histone H2A/H2B/H3/H4 | HC | chr4:2429793... 177 3e-45
Medtr4g071150.1 | core histone H2A/H2B/H3/H4 | HC | chr4:2682761... 177 3e-45
Medtr4g064005.1 | core histone H2A/H2B/H3/H4 | HC | chr4:2387506... 176 5e-45
Medtr8g086640.1 | core histone H2A/H2B/H3/H4 | HC | chr8:3596133... 171 2e-43
Medtr7g113160.1 | histone H2A 6 | HC | chr7:46584129-46584929 | ... 156 8e-39
Medtr7g108320.1 | histone H2A 6 | HC | chr7:44072343-44071492 | ... 140 6e-34
Medtr7g093910.1 | core histone H2A/H2B/H3/H4 | HC | chr7:3736816... 139 7e-34
Medtr7g114060.1 | histone H2A 6 | HC | chr7:47039016-47040106 | ... 139 1e-33
Medtr7g114040.1 | histone H2A 6 | HC | chr7:47032712-47033690 | ... 139 1e-33
Medtr2g082220.1 | histone H2A 6 | HC | chr2:34614712-34616095 | ... 134 3e-32
Medtr2g082510.1 | histone H2A 6 | HC | chr2:34622134-34623149 | ... 134 3e-32
Medtr6g005150.1 | core histone H2A/H2B/H3/H4 | HC | chr6:630102-... 127 5e-30
Medtr7g114050.1 | core histone H2A/H2B/H3/H4 | HC | chr7:4703594... 114 4e-26
Medtr4g063300.1 | core histone H2A/H2B/H3/H4 | HC | chr4:2344685... 105 2e-23
Medtr1g011850.1 | core histone H2A/H2B/H3/H4 | HC | chr1:2226797... 84 6e-17
Medtr1g011750.1 | core histone H2A/H2B/H3/H4 | HC | chr1:2219316... 84 6e-17
Medtr1g114050.1 | core histone H2A/H2B/H3/H4 | HC | chr1:5144884... 82 2e-16
Medtr1g069770.1 | core histone H2A/H2B/H3/H4 | LC | chr1:3043622... 80 5e-16
Medtr1g071040.1 | core histone H2A/H2B/H3/H4 | HC | chr1:3145290... 80 8e-16
Medtr7g010440.1 | histone H2A, putative | LC | chr7:2581222-2576... 74 5e-14
Medtr4g005910.1 | histone H2A | HC | chr4:420323-420040 | 20130731 68 3e-12
Medtr4g048490.1 | core histone H2A/H2B/H3/H4 | HC | chr4:1720005... 54 4e-08
Medtr2g096590.1 | histone H2A | HC | chr2:41251755-41251981 | 20... 47 6e-06
>Medtr2g096570.1 | core histone H2A/H2B/H3/H4 | HC |
chr2:41245010-41243919 | 20130731
Length = 153
Score = 188 bits (477), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 100/130 (76%), Positives = 104/130 (80%), Gaps = 2/130 (1%)
Query: 25 VSRSIKAGLQFPVGRIGRYLKKGRYAQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNK 84
V+RSI+AGLQFPVGRIGRYLKKGRYAQRVGTGAP GNAARDNK
Sbjct: 24 VTRSIRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNK 83
Query: 85 KNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKT--AEKVAKEPKSPA 142
KNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKT + V+KEPKSP
Sbjct: 84 KNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTERSNTVSKEPKSPK 143
Query: 143 KKGVKSPKKA 152
K KSPKKA
Sbjct: 144 PKAGKSPKKA 153
>Medtr4g063280.1 | histone H2A 6 | HC | chr4:23448360-23447582 |
20130731
Length = 145
Score = 187 bits (475), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 98/128 (76%), Positives = 103/128 (80%), Gaps = 1/128 (0%)
Query: 25 VSRSIKAGLQFPVGRIGRYLKKGRYAQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNK 84
V+RSI+AGLQFPVGRIGRYLKKGRYAQRVGTGAP GNAARDNK
Sbjct: 19 VTRSIRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNK 78
Query: 85 KNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTAEKVAKEPKSPAKK 144
KNRIIPRHVLLAVRNDEELGKLL GVTIAHGGV PNINP+LLPKKT + V+KEPKSP K
Sbjct: 79 KNRIIPRHVLLAVRNDEELGKLLNGVTIAHGGVFPNINPILLPKKTEKAVSKEPKSPKKA 138
Query: 145 GVKSPKKA 152
G KSPKKA
Sbjct: 139 G-KSPKKA 145
>Medtr2g096610.1 | core histone H2A/H2B/H3/H4 | HC |
chr2:41257422-41258284 | 20130731
Length = 148
Score = 179 bits (454), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 96/128 (75%), Positives = 100/128 (78%), Gaps = 2/128 (1%)
Query: 25 VSRSIKAGLQFPVGRIGRYLKKGRYAQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNK 84
V+RS +AGLQFPVGRIGRYLKKGRYAQRVGTGAP GNAARDNK
Sbjct: 23 VTRSTRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNK 82
Query: 85 KNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTAEKVAKEPKSPAKK 144
KNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINP+LLPKK EK A KSP+ K
Sbjct: 83 KNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPILLPKKN-EKAATTTKSPS-K 140
Query: 145 GVKSPKKA 152
KSPKKA
Sbjct: 141 ATKSPKKA 148
>Medtr4g063410.1 | core histone H2A/H2B/H3/H4 | HC |
chr4:23423893-23423177 | 20130731
Length = 148
Score = 178 bits (452), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 94/128 (73%), Positives = 99/128 (77%), Gaps = 4/128 (3%)
Query: 25 VSRSIKAGLQFPVGRIGRYLKKGRYAQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNK 84
V+RSI+AGLQFPVGRIGRYLKKGRYAQRVGTGAP GNAARDNK
Sbjct: 25 VTRSIRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNK 84
Query: 85 KNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTAEKVAKEPKSPAKK 144
KNRIIPRHVLLAVRNDE+LGKLL GVTIAHGGVLPNINP+LLPKK V+KEP KK
Sbjct: 85 KNRIIPRHVLLAVRNDEDLGKLLNGVTIAHGGVLPNINPILLPKKIENSVSKEP----KK 140
Query: 145 GVKSPKKA 152
KSPKKA
Sbjct: 141 AGKSPKKA 148
>Medtr4g064967.1 | core histone H2A/H2B/H3/H4 | HC |
chr4:24297934-24298514 | 20130731
Length = 148
Score = 177 bits (449), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 95/128 (74%), Positives = 99/128 (77%), Gaps = 4/128 (3%)
Query: 25 VSRSIKAGLQFPVGRIGRYLKKGRYAQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNK 84
V+RSI+AGLQFPVGRIGRYLKKGRYAQRVGTGAP GNAARDNK
Sbjct: 25 VTRSIRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNK 84
Query: 85 KNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTAEKVAKEPKSPAKK 144
KNRIIPRHVLLAVRNDEELGKLL GVTIAHGGVLPNINP+LLPKK + V KEP KK
Sbjct: 85 KNRIIPRHVLLAVRNDEELGKLLNGVTIAHGGVLPNINPILLPKKNEKAVPKEP----KK 140
Query: 145 GVKSPKKA 152
KSPKKA
Sbjct: 141 AGKSPKKA 148
>Medtr4g071150.1 | core histone H2A/H2B/H3/H4 | HC |
chr4:26827610-26828386 | 20130731
Length = 152
Score = 177 bits (449), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 99/154 (64%), Positives = 105/154 (68%), Gaps = 4/154 (2%)
Query: 1 MDTTTXXXXXXXXXXXXXXXXXXXVSRSIKAGLQFPVGRIGRYLKKGRYAQRVGTGAPXX 60
MD +T V+RSI+AGLQFPVGRIGRYLKKGRYAQRVGTGAP
Sbjct: 1 MDASTKTTKKGAGGRKGGGPRKKSVTRSIRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVY 60
Query: 61 XXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
GNAARDNKKNRIIPRH+LLAVRNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61 LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHLLLAVRNDEELGKLLAGVTIAHGGVLPN 120
Query: 121 INPVLLPKKT--AEKVAKEPKSPAKKGVKSPKKA 152
INP+LLPKKT A KEPK+ K KSPKKA
Sbjct: 121 INPILLPKKTERANTGGKEPKT--TKAGKSPKKA 152
>Medtr4g064005.1 | core histone H2A/H2B/H3/H4 | HC |
chr4:23875068-23875767 | 20130731
Length = 148
Score = 176 bits (447), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 94/128 (73%), Positives = 98/128 (76%), Gaps = 4/128 (3%)
Query: 25 VSRSIKAGLQFPVGRIGRYLKKGRYAQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNK 84
V+RSI+AGLQFPVGRIGRYLKKGRYAQRVGTGAP GNAARDNK
Sbjct: 25 VTRSIRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNK 84
Query: 85 KNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTAEKVAKEPKSPAKK 144
KNRIIPRHVLLAVRNDEELGKLL GVTIAHGGVLPNINP+LLPKK + KEP KK
Sbjct: 85 KNRIIPRHVLLAVRNDEELGKLLNGVTIAHGGVLPNINPILLPKKNEKTDTKEP----KK 140
Query: 145 GVKSPKKA 152
KSPKKA
Sbjct: 141 AGKSPKKA 148
>Medtr8g086640.1 | core histone H2A/H2B/H3/H4 | HC |
chr8:35961338-35962088 | 20130731
Length = 150
Score = 171 bits (433), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 92/137 (67%), Positives = 96/137 (70%), Gaps = 1/137 (0%)
Query: 1 MDTTTXXXXXXXXXXXXXXXXXXXVSRSIKAGLQFPVGRIGRYLKKGRYAQRVGTGAPXX 60
MD +T V+RSI+AGLQFPVGRIGRYLKKGRYAQRVGTGAP
Sbjct: 1 MDASTKATKKGAGGRKGGGPRKKSVTRSIRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVY 60
Query: 61 XXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
GNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61 LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
Query: 121 INPVLLPKKTAEKVAKE 137
INPVLLPKK+ EK KE
Sbjct: 121 INPVLLPKKS-EKPVKE 136
>Medtr7g113160.1 | histone H2A 6 | HC | chr7:46584129-46584929 |
20130731
Length = 144
Score = 156 bits (394), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 82/117 (70%), Positives = 87/117 (74%), Gaps = 2/117 (1%)
Query: 25 VSRSIKAGLQFPVGRIGRYLKKGRYAQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNK 84
VS+S KAGLQFPVGRI R++KKGRY+QRVGTGAP GNAARDNK
Sbjct: 27 VSKSSKAGLQFPVGRIARFMKKGRYSQRVGTGAPIYLAAVLEYLAAEVLELAGNAARDNK 86
Query: 85 KNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKT--AEKVAKEPK 139
KNRI PRHV LAVRND+ELGKLL GVTIA GGVLPNINPVLLPKKT AEK PK
Sbjct: 87 KNRINPRHVCLAVRNDDELGKLLQGVTIASGGVLPNINPVLLPKKTAAAEKTTNSPK 143
>Medtr7g108320.1 | histone H2A 6 | HC | chr7:44072343-44071492 |
20130731
Length = 142
Score = 140 bits (352), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 70/105 (66%), Positives = 77/105 (73%)
Query: 25 VSRSIKAGLQFPVGRIGRYLKKGRYAQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNK 84
VSRS KAGLQFPVGRI R+LK G+YA+RVG GAP GNAARDNK
Sbjct: 23 VSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNK 82
Query: 85 KNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 129
KNRI+PRH+ LAVRNDEEL KLL VTIA+GGVLPNI+ LLPKK
Sbjct: 83 KNRIVPRHIQLAVRNDEELSKLLGAVTIANGGVLPNIHQTLLPKK 127
>Medtr7g093910.1 | core histone H2A/H2B/H3/H4 | HC |
chr7:37368164-37367294 | 20130731
Length = 142
Score = 139 bits (351), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 71/109 (65%), Positives = 79/109 (72%)
Query: 25 VSRSIKAGLQFPVGRIGRYLKKGRYAQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNK 84
VSRS KAGLQFPVGRI R+LK GRY+QRVG+G+P GNAARDNK
Sbjct: 23 VSRSSKAGLQFPVGRIARFLKAGRYSQRVGSGSPVYLSAVLEYLCAEVLELAGNAARDNK 82
Query: 85 KNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTAEK 133
K RI+PRH+ LAVRNDEEL KLL VTIA+GGVLPNI+ LLPKK A K
Sbjct: 83 KTRIVPRHLQLAVRNDEELSKLLGHVTIANGGVLPNIHQTLLPKKVAGK 131
>Medtr7g114060.1 | histone H2A 6 | HC | chr7:47039016-47040106 |
20130731
Length = 139
Score = 139 bits (350), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 70/105 (66%), Positives = 77/105 (73%)
Query: 25 VSRSIKAGLQFPVGRIGRYLKKGRYAQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNK 84
VSRS KAGLQFPVGRI R+LK G+YA+RVG GAP GNAARDNK
Sbjct: 20 VSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNK 79
Query: 85 KNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 129
KNRI+PRH+ LAVRNDEEL KLL VTIA+GGVLPNI+ LLPKK
Sbjct: 80 KNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQTLLPKK 124
>Medtr7g114040.1 | histone H2A 6 | HC | chr7:47032712-47033690 |
20130731
Length = 139
Score = 139 bits (350), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 70/105 (66%), Positives = 77/105 (73%)
Query: 25 VSRSIKAGLQFPVGRIGRYLKKGRYAQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNK 84
VSRS KAGLQFPVGRI R+LK G+YA+RVG GAP GNAARDNK
Sbjct: 20 VSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNK 79
Query: 85 KNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 129
KNRI+PRH+ LAVRNDEEL KLL VTIA+GGVLPNI+ LLPKK
Sbjct: 80 KNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQTLLPKK 124
>Medtr2g082220.1 | histone H2A 6 | HC | chr2:34614712-34616095 |
20130731
Length = 131
Score = 134 bits (337), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 67/105 (63%), Positives = 76/105 (72%)
Query: 26 SRSIKAGLQFPVGRIGRYLKKGRYAQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKK 85
SRS KAGLQFPVGRI R+LK G+YA+RVG GAP GNAARDNKK
Sbjct: 18 SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKK 77
Query: 86 NRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKT 130
RI+PRH+ LAVRNDEEL KLL VTIA+GGV+PNI+ +LLPKK
Sbjct: 78 TRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKA 122
>Medtr2g082510.1 | histone H2A 6 | HC | chr2:34622134-34623149 |
20130731
Length = 132
Score = 134 bits (337), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 67/106 (63%), Positives = 76/106 (71%)
Query: 25 VSRSIKAGLQFPVGRIGRYLKKGRYAQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNK 84
SRS KAGLQFPVGRI R+LK G+YA+RVG GAP GNAARDNK
Sbjct: 17 TSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNK 76
Query: 85 KNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKT 130
K RI+PRH+ LAVRNDEEL KLL VTIA+GGV+PNI+ +LLPKK
Sbjct: 77 KTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKA 122
>Medtr6g005150.1 | core histone H2A/H2B/H3/H4 | HC |
chr6:630102-630726 | 20130731
Length = 139
Score = 127 bits (318), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 73/128 (57%), Positives = 82/128 (64%), Gaps = 16/128 (12%)
Query: 25 VSRSIKAGLQFPVGRIGRYLKKGRYAQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNK 84
VS+S K GLQFP+GRI R++KKG Y+QR+GTGAP GN ARDNK
Sbjct: 27 VSKSSKVGLQFPIGRIARFMKKGHYSQRIGTGAPIYLAEVLELA--------GNVARDNK 78
Query: 85 KNRIIP-RHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTAEKVAKEPKSPAK 143
KN I P RHV LA RN +ELGKLL GV IA GGVLPNINPVLLPKK + +
Sbjct: 79 KNIINPPRHVCLAARNVDELGKLLQGVAIASGGVLPNINPVLLPKKNGS-------AATE 131
Query: 144 KGVKSPKK 151
K KSPKK
Sbjct: 132 KSTKSPKK 139
>Medtr7g114050.1 | core histone H2A/H2B/H3/H4 | HC |
chr7:47035942-47035278 | 20130731
Length = 130
Score = 114 bits (284), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 64/106 (60%), Positives = 71/106 (66%), Gaps = 11/106 (10%)
Query: 25 VSRSIKAGLQFPVGRIGRYLKKGRYAQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNK 84
VSRS KAGLQFPVGRI R+LK G+YA+RVG GAP GNAARDNK
Sbjct: 22 VSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEV----GNAARDNK 77
Query: 85 KNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKT 130
K + LAVRNDEEL KLL VTIA+GGVLPNI+ LLPKK+
Sbjct: 78 K-------IQLAVRNDEELSKLLGAVTIANGGVLPNIHQTLLPKKS 116
>Medtr4g063300.1 | core histone H2A/H2B/H3/H4 | HC |
chr4:23446851-23446510 | 20130731
Length = 113
Score = 105 bits (261), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/107 (61%), Positives = 68/107 (63%), Gaps = 7/107 (6%)
Query: 45 KKGRYAQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELG 104
KKG YAQRVGTGAP GNAARDNKKNRIIPRH+L AV NDEELG
Sbjct: 10 KKGIYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHLLFAVMNDEELG 69
Query: 105 KLLAGVTIAHGGVLPNINPVLLPKKTAEKVAKEPKSPAKKGVKSPKK 151
KLL GVTIAHGG+L L K AKEPKSP K G KSPKK
Sbjct: 70 KLLVGVTIAHGGIL------LTKKAEKAASAKEPKSPKKVG-KSPKK 109
>Medtr1g011850.1 | core histone H2A/H2B/H3/H4 | HC |
chr1:2226797-2223509 | 20130731
Length = 134
Score = 83.6 bits (205), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 51/109 (46%), Positives = 62/109 (56%), Gaps = 2/109 (1%)
Query: 25 VSRSIKAGLQFPVGRIGRYLKKGRYAQ-RVGTGAPXXXXXXXXXXXXXXXXXXGNAARDN 83
SRS +AGLQFPVGRI R LK A RVG A GNA++D
Sbjct: 27 TSRSSRAGLQFPVGRIHRLLKSRTMAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDL 86
Query: 84 KKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTAE 132
K RI PRH+ LA+R DEEL L+ G TIA GGV+P+I+ L+ K + E
Sbjct: 87 KVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSKE 134
>Medtr1g011750.1 | core histone H2A/H2B/H3/H4 | HC |
chr1:2219316-2215483 | 20130731
Length = 134
Score = 83.6 bits (205), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 51/109 (46%), Positives = 62/109 (56%), Gaps = 2/109 (1%)
Query: 25 VSRSIKAGLQFPVGRIGRYLKKGRYAQ-RVGTGAPXXXXXXXXXXXXXXXXXXGNAARDN 83
SRS +AGLQFPVGRI R LK A RVG A GNA++D
Sbjct: 27 TSRSSRAGLQFPVGRIHRLLKSRTMAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDL 86
Query: 84 KKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTAE 132
K RI PRH+ LA+R DEEL L+ G TIA GGV+P+I+ L+ K + E
Sbjct: 87 KVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSKE 134
>Medtr1g114050.1 | core histone H2A/H2B/H3/H4 | HC |
chr1:51448842-51449237 | 20130731
Length = 131
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/109 (46%), Positives = 61/109 (55%), Gaps = 2/109 (1%)
Query: 25 VSRSIKAGLQFPVGRIGRYLKKGRYAQ-RVGTGAPXXXXXXXXXXXXXXXXXXGNAARDN 83
+SRS +AG+QFPVGRI R LK A RVG A GNA+RD
Sbjct: 24 ISRSSRAGIQFPVGRIHRQLKHRVQANGRVGATAAVYLASILEYLTTEVLELAGNASRDL 83
Query: 84 KKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTAE 132
RI PRH+ LA+R DEEL L+ G TIA GGV+PNI+ L+ K E
Sbjct: 84 NVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPNIHKSLINKTAKE 131
>Medtr1g069770.1 | core histone H2A/H2B/H3/H4 | LC |
chr1:30436227-30437199 | 20130731
Length = 106
Score = 80.5 bits (197), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 39/54 (72%), Positives = 44/54 (81%)
Query: 77 GNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKT 130
GNAA DN+K RIIPRH+LL +R +EEL KL AGVTIAHGGVL +IN VLL KT
Sbjct: 42 GNAAHDNRKTRIIPRHMLLVIRINEELEKLHAGVTIAHGGVLLDINHVLLFMKT 95
>Medtr1g071040.1 | core histone H2A/H2B/H3/H4 | HC |
chr1:31452900-31454806 | 20130731
Length = 134
Score = 80.1 bits (196), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 62/108 (57%), Gaps = 2/108 (1%)
Query: 26 SRSIKAGLQFPVGRIGRYLKKGRYAQ-RVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNK 84
SRS +AG+QFPVGRI R LK+ A RVG A GNA++D K
Sbjct: 28 SRSSRAGIQFPVGRIHRQLKQRVQANGRVGATAAVYLASILEYLTAEVLELAGNASKDLK 87
Query: 85 KNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTAE 132
RI PRH+ LA+R DEEL L+ G TIA GGV+P+I+ L+ K E
Sbjct: 88 VKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTAKE 134
>Medtr7g010440.1 | histone H2A, putative | LC | chr7:2581222-2576825
| 20130731
Length = 295
Score = 73.9 bits (180), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 36/51 (70%), Positives = 42/51 (82%)
Query: 78 NAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 128
NAARD KK RI+PRH+ L VRNDEEL KLL VTIA+GGV+ NI+ +LLPK
Sbjct: 122 NAARDRKKIRIVPRHIQLVVRNDEELSKLLGDVTIANGGVMQNIHNLLLPK 172
>Medtr4g005910.1 | histone H2A | HC | chr4:420323-420040 | 20130731
Length = 57
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 38/43 (88%)
Query: 87 RIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 129
RI+PRH+ LAVRNDEEL KLL VTIA+GGV+PNI+ +LLPKK
Sbjct: 4 RIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKK 46
>Medtr4g048490.1 | core histone H2A/H2B/H3/H4 | HC |
chr4:17200059-17200463 | 20130731
Length = 105
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 78 NAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTAE 132
NA D K RI PRH+ LA+R DEEL L+ G TIA GGV+PNI+ L+ K E
Sbjct: 52 NATNDLKLKRITPRHLQLAIRGDEELDTLVKG-TIAGGGVIPNIHKSLINKTIKE 105
>Medtr2g096590.1 | histone H2A | HC | chr2:41251755-41251981 |
20130731
Length = 52
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/42 (64%), Positives = 32/42 (76%), Gaps = 2/42 (4%)
Query: 110 VTIAHGGVLPNINPVLLPKKTAEKVAKEPKSPAKKGVKSPKK 151
+TIA GGVLPNINP+LLPKKT EK A +P+ K KSPK+
Sbjct: 12 LTIARGGVLPNINPMLLPKKT-EKAAAASNTPS-KATKSPKE 51