Miyakogusa Predicted Gene

Lj0g3v0109299.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0109299.1 tr|B9MW42|B9MW42_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_918921 PE=4
SV=1,57.3,2e-16,seg,NULL,TC76323.path1.1
         (96 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g038150.1 | regulator of Vps4 activity in the MVB pathway ...   112   1e-25

>Medtr6g038150.1 | regulator of Vps4 activity in the MVB pathway
           protein | HC | chr6:13631459-13638217 | 20130731
          Length = 585

 Score =  112 bits (279), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 57/91 (62%), Positives = 69/91 (75%)

Query: 6   VREDHELHQDHYAXXXXXXXXXXXXDTLKEDFNTSLPGDHVLGDDSSNHQPKRLPSMDDD 65
           V +DH++H+DH A            DTLKEDF++S P D VL D S++HQPKRLPSMDDD
Sbjct: 495 VFKDHDIHEDHNASIGSHSSSFPSFDTLKEDFDSSPPTDRVLDDKSNSHQPKRLPSMDDD 554

Query: 66  PYFSYPNLFSSQNSNVGSQDHADNSRSTHDL 96
            YFSYPNLF+SQNSNVGS  H+DNSRST+D+
Sbjct: 555 TYFSYPNLFNSQNSNVGSHTHSDNSRSTYDM 585