Miyakogusa Predicted Gene

Lj0g3v0109009.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0109009.2 tr|D3EPH5|D3EPH5_UCYNA ATP-dependent DNA helicase
RecG OS=cyanobacterium UCYN-A GN=UCYN_06780 PE=4
S,25,0.0000002,Nucleic acid-binding proteins,Nucleic acid-binding,
OB-fold-like; seg,NULL,CUFF.6257.2
         (544 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g031140.1 | ATP-dependent DNA helicase RecG | HC | chr1:10...   528   e-150
Medtr3g079925.2 | hypothetical protein | HC | chr3:36127310-3612...   143   5e-34
Medtr3g079925.1 | hypothetical protein | HC | chr3:36126329-3612...   122   1e-27
Medtr3g079915.1 | ATP-dependent DNA helicase RecG | HC | chr3:36...    96   7e-20

>Medtr1g031140.1 | ATP-dependent DNA helicase RecG | HC |
           chr1:10876622-10858818 | 20130731
          Length = 984

 Score =  528 bits (1360), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 273/433 (63%), Positives = 324/433 (74%), Gaps = 42/433 (9%)

Query: 121 LQSFQCFSCKQLRNVVVFQGKGSCYSTFFSRRMRCGNFLPLKYSKWCYRMKHKFPEKKVV 180
           LQSFQC SCKQLR V++FQGK + YS  FS +MRC NFLP K+SK CYRMKHKF ++KVV
Sbjct: 18  LQSFQCMSCKQLRTVILFQGK-TGYSNPFSTKMRCCNFLPFKFSKMCYRMKHKFTDQKVV 76

Query: 181 EMEPCGGRGSSLKLRNQVFALLDYN--------------KMSLKDVLDDSDISLICKTFP 226
           E++  G + S++KLR +VFAL+D+N              KM+ KD +DD DISL+C+ FP
Sbjct: 77  EIDQHGVK-STVKLRKKVFALMDHNIPDLIGNGSGEMKSKMNRKDAVDDFDISLMCRIFP 135

Query: 227 SITLGNAPKVDLYDGTELESETTNSSATEDSEQCFSDSSEARWVQNTLPEAQSPVYVDHS 286
           SITLG+AP+V LYDGT   SET   S T+D EQ   DSS                     
Sbjct: 136 SITLGSAPQVGLYDGTTAYSETNIISGTKDFEQHLYDSS--------------------- 174

Query: 287 SVLSSSLQKDGS--CPLIPQPMSSICEENLDRVIKEVSQEKLGLQSQSNVTPNDLFLDES 344
            + SS L+KD S  CPL PQ +SSI EE LD+V +E SQ+K+GLQSQSN+T N+L LD S
Sbjct: 175 -LTSSPLRKDDSFPCPLTPQSVSSIYEEKLDQVTREDSQKKVGLQSQSNLTLNELSLDTS 233

Query: 345 ISCFPGLSKRHCRQLDDCGFHTFRKLLHHFPRSYANLQNAHAKIDDGQYLIFVGKVLSSR 404
           ++C PGL+K+   QLD+CGFHT RKLLHHFPRSYANLQNAH  I DGQYL+FVG+VLSSR
Sbjct: 234 VNCLPGLTKKQREQLDNCGFHTLRKLLHHFPRSYANLQNAHGNIYDGQYLMFVGEVLSSR 293

Query: 405 GVKANCSFSFLEVIVGCQITDSESASGHVTGNAIDGQEKTIYLHLKKFFRGSRFTFKPFL 464
           GV+ANCS S LEVIVGCQI D ES   HVT     G+ +T+YLHLK+FFRG+RFTFK FL
Sbjct: 294 GVRANCSISLLEVIVGCQIADKESDIEHVTDKV--GKTRTVYLHLKRFFRGTRFTFKGFL 351

Query: 465 SSIANKYREGDIACVSGKVRTMRAEDHYEMREYNIDVLEDGKELSFCAKERPYPIYPSKG 524
           +SIANKY+  DIACVSGKV+TM A+DHYE+RE+NIDVLEDGK+LS CAKERPY IYPSKG
Sbjct: 352 NSIANKYQVRDIACVSGKVKTMPAKDHYEIREFNIDVLEDGKDLSLCAKERPYCIYPSKG 411

Query: 525 GLNPTFLRDIIAR 537
           GLNPTFLRDIIAR
Sbjct: 412 GLNPTFLRDIIAR 424


>Medtr3g079925.2 | hypothetical protein | HC |
           chr3:36127310-36124364 | 20130731
          Length = 190

 Score =  143 bits (360), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 89/191 (46%), Positives = 115/191 (60%), Gaps = 40/191 (20%)

Query: 153 MRCGNFLPLKYSKWCYRMKHKFPEKKVVEMEPCGGRGSSLKLRNQVFALLDYN------- 205
           MRC NFLP K+SK CYRMKHKF ++KVVE++  G + S++KLR +VFAL+D+N       
Sbjct: 1   MRCCNFLPFKFSKMCYRMKHKFTDQKVVEIDQHGVK-STVKLRKKVFALMDHNIPDLIGN 59

Query: 206 -------KMSLKDVLDDSDISLICKTFPSITLGNAPKVDLYDGTELESETTNSSATEDSE 258
                  KM+ KD +DD DISL+C+ FPSITLG+ P+V LYDGT   SET   S T+D E
Sbjct: 60  GSGEMKSKMNRKDAVDDFDISLMCRIFPSITLGSPPQVGLYDGTTAYSETNIISETKDFE 119

Query: 259 QCFSDSSEARWVQNTLPEAQSPVYVDHSSVLSSSLQKDGS--CPLIPQPMSSICEENLDR 316
           Q   D                      SS+ SS L+KD S  CPL PQ +SSI EE LD 
Sbjct: 120 QHLYD----------------------SSLTSSPLRKDDSFPCPLTPQSVSSIYEEKLD- 156

Query: 317 VIKEVSQEKLG 327
           ++ ++ + K G
Sbjct: 157 LLGKILKRKWG 167


>Medtr3g079925.1 | hypothetical protein | HC |
           chr3:36126329-36124729 | 20130731
          Length = 177

 Score =  122 bits (305), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 79/177 (44%), Positives = 104/177 (58%), Gaps = 40/177 (22%)

Query: 167 CYRMKHKFPEKKVVEMEPCGGRGSSLKLRNQVFALLDYN--------------KMSLKDV 212
           CYRMKHKF ++KVVE++  G + S++KLR +VFAL+D+N              KM+ KD 
Sbjct: 2   CYRMKHKFTDQKVVEIDQHGVK-STVKLRKKVFALMDHNIPDLIGNGSGEMKSKMNRKDA 60

Query: 213 LDDSDISLICKTFPSITLGNAPKVDLYDGTELESETTNSSATEDSEQCFSDSSEARWVQN 272
           +DD DISL+C+ FPSITLG+ P+V LYDGT   SET   S T+D EQ   D         
Sbjct: 61  VDDFDISLMCRIFPSITLGSPPQVGLYDGTTAYSETNIISETKDFEQHLYD--------- 111

Query: 273 TLPEAQSPVYVDHSSVLSSSLQKDGS--CPLIPQPMSSICEENLDRVIKEVSQEKLG 327
                        SS+ SS L+KD S  CPL PQ +SSI EE LD ++ ++ + K G
Sbjct: 112 -------------SSLTSSPLRKDDSFPCPLTPQSVSSIYEEKLD-LLGKILKRKWG 154


>Medtr3g079915.1 | ATP-dependent DNA helicase RecG | HC |
           chr3:36124323-36116041 | 20130731
          Length = 174

 Score = 96.3 bits (238), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 44/52 (84%), Positives = 48/52 (92%)

Query: 486 MRAEDHYEMREYNIDVLEDGKELSFCAKERPYPIYPSKGGLNPTFLRDIIAR 537
           M A+ HYE+RE+NIDVLEDGK+LS CAKERPY IYPSKGGLNPTFLRDIIAR
Sbjct: 1   MPAKGHYEIREFNIDVLEDGKDLSLCAKERPYCIYPSKGGLNPTFLRDIIAR 52