Miyakogusa Predicted Gene
- Lj0g3v0108809.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0108809.1 Non Characterized Hit- tr|B9EVV4|B9EVV4_ORYSJ
Putative uncharacterized protein OS=Oryza sativa
subsp,87.76,0.0000000000005,seg,NULL,
NODE_37432_length_2667_cov_67.631424.path2.1
(340 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr8g106090.1 | THO complex subunit 2 | HC | chr8:44793649-447... 435 e-122
Medtr7g117220.2 | THO complex subunit 2 | HC | chr7:48439247-484... 429 e-120
Medtr7g117220.1 | THO complex subunit 2 | HC | chr7:48439201-484... 428 e-120
Medtr7g117220.3 | THO complex subunit 2 | HC | chr7:48436986-484... 427 e-120
Medtr7g117220.4 | THO complex subunit 2 | HC | chr7:48436522-484... 427 e-120
>Medtr8g106090.1 | THO complex subunit 2 | HC | chr8:44793649-44773619
| 20130731
Length = 1858
Score = 435 bits (1118), Expect = e-122, Method: Compositional matrix adjust.
Identities = 241/343 (70%), Positives = 256/343 (74%), Gaps = 9/343 (2%)
Query: 1 MFTKISSVFPVTRKSGINLEKRVAKIKGDEREDLKXXXXXXXXXXXXRKPSWVTDEEFGM 60
M TKISSVFPVTRKSGINLEKRVAKIK DEREDLK RKPSWVTDEEFGM
Sbjct: 1171 MLTKISSVFPVTRKSGINLEKRVAKIKSDEREDLKVLATGVAAALAARKPSWVTDEEFGM 1230
Query: 61 GYLELKPAPSMTKSSAGTSVTVQSGISLGVSQTESASGKHLDSGNTVKDQITRTKTADGK 120
GYLELKPAPSMTKS+AG S VQSGI L SQTESASGKHLDSGNTVKDQ +TKTADGK
Sbjct: 1231 GYLELKPAPSMTKSAAGNSAAVQSGIGLQFSQTESASGKHLDSGNTVKDQTVKTKTADGK 1290
Query: 121 SERSESITAMKSDSGHVKIKGSSIVNGLDAQSSLPSSAGQSGTSKSGETPKQVEESIIRA 180
SER+ES+TA KSDSGH K+KGSS+VNG+DAQSSL S AGQSG KS E KQVEESI RA
Sbjct: 1291 SERTESLTATKSDSGHGKLKGSSMVNGVDAQSSLASPAGQSGALKSVENQKQVEESISRA 1350
Query: 181 SDEHATRTAESRTSAK-RSVPAGSLSKPSKQDPAKEDGRSGKPVTRASGSMSSDKDIQPH 239
DEH TR ESR S K RSV GSL KPSKQDP KEDGRSGK VTR SGS SSDKD+Q H
Sbjct: 1351 PDEHITRNVESRPSVKQRSVATGSLLKPSKQDPLKEDGRSGKTVTRTSGSSSSDKDLQTH 1410
Query: 240 ASEGRHXXXXXXXXXXXXXXXXXXXXK--APSAKVSFDGPGNESKADIGASKSSDIRASM 297
AS+GRH K A +A +FDG GNESKA++GA+K SM
Sbjct: 1411 ASDGRHTGTNISSSFSANGNSVSGSAKGLAQAATTAFDGSGNESKAEVGAAK-----FSM 1465
Query: 298 GKDDGNDITDFTRG-SSRVVHSPRHENTVTSKSSDKSQKRASS 339
KDD N+ DFTRG SSRVVHSPRHENT TSKSSDK QKRA S
Sbjct: 1466 VKDDVNEFADFTRGSSSRVVHSPRHENTATSKSSDKIQKRAGS 1508
>Medtr7g117220.2 | THO complex subunit 2 | HC | chr7:48439247-48414498
| 20130731
Length = 1836
Score = 429 bits (1102), Expect = e-120, Method: Compositional matrix adjust.
Identities = 234/342 (68%), Positives = 253/342 (73%), Gaps = 8/342 (2%)
Query: 1 MFTKISSVFPVTRKSGINLEKRVAKIKGDEREDLKXXXXXXXXXXXXRKPSWVTDEEFGM 60
M TKISSVFPVT KSG +LEKRVAKIK DEREDLK RKP WVT EEFGM
Sbjct: 1177 MLTKISSVFPVTLKSGTSLEKRVAKIKSDEREDLKVLATGVAAALAARKPYWVTAEEFGM 1236
Query: 61 GYLELKPAPSMTKSSAGTSVTVQSGISLGVSQTESASGKHLDSGNTVKDQITRTKTADGK 120
GY+ K APSMTKS+AG S VQSGI L VSQTESASGKHLDSGNTVKDQ RTKTAD +
Sbjct: 1237 GYIVFKSAPSMTKSAAGNSAAVQSGIGLHVSQTESASGKHLDSGNTVKDQTVRTKTADDE 1296
Query: 121 SERSESITAMKSDSGHVKIKGSSIVNGLDAQSSLPSSAGQSGTSKSGETPKQVEESIIRA 180
SER+ES TA KSDSGHVK+KGSS+VN LDAQSSLPS AGQSG KS E PKQV+ESI RA
Sbjct: 1297 SERTESSTATKSDSGHVKLKGSSMVNELDAQSSLPSPAGQSGALKSVENPKQVQESISRA 1356
Query: 181 SDEHATRTAESRTSAKRSVPAGSLSKPSKQDPAKEDGRSGKPVTRASGSMSSDKDIQPHA 240
DEH TR ESRTS KR + SL KPSKQDP KED RSGK V RASGS S+DKD+Q HA
Sbjct: 1357 PDEHVTRIVESRTSVKRKMATVSLLKPSKQDPLKEDARSGKSVARASGSSSNDKDLQTHA 1416
Query: 241 SEGRHXXXXXXXXXXXXXXXXXXXXK--APSAKVSFDGPGNESKADIGASKSSDIRASMG 298
S+GRH K APSAK++FDG GNESKA++GA+KS SM
Sbjct: 1417 SDGRHTRTNVSSSVNANGYSVPGSAKGLAPSAKIAFDGSGNESKAEVGAAKS-----SMV 1471
Query: 299 KDDGNDITDFTRG-SSRVVHSPRHENTVTSKSSDKSQKRASS 339
KDDGNDI DFTRG SSR+VHSPRHENT T+KSSDK QKR S
Sbjct: 1472 KDDGNDIADFTRGSSSRLVHSPRHENTATTKSSDKIQKRTGS 1513
>Medtr7g117220.1 | THO complex subunit 2 | HC | chr7:48439201-48414077
| 20130731
Length = 1856
Score = 428 bits (1101), Expect = e-120, Method: Compositional matrix adjust.
Identities = 234/342 (68%), Positives = 253/342 (73%), Gaps = 8/342 (2%)
Query: 1 MFTKISSVFPVTRKSGINLEKRVAKIKGDEREDLKXXXXXXXXXXXXRKPSWVTDEEFGM 60
M TKISSVFPVT KSG +LEKRVAKIK DEREDLK RKP WVT EEFGM
Sbjct: 1177 MLTKISSVFPVTLKSGTSLEKRVAKIKSDEREDLKVLATGVAAALAARKPYWVTAEEFGM 1236
Query: 61 GYLELKPAPSMTKSSAGTSVTVQSGISLGVSQTESASGKHLDSGNTVKDQITRTKTADGK 120
GY+ K APSMTKS+AG S VQSGI L VSQTESASGKHLDSGNTVKDQ RTKTAD +
Sbjct: 1237 GYIVFKSAPSMTKSAAGNSAAVQSGIGLHVSQTESASGKHLDSGNTVKDQTVRTKTADDE 1296
Query: 121 SERSESITAMKSDSGHVKIKGSSIVNGLDAQSSLPSSAGQSGTSKSGETPKQVEESIIRA 180
SER+ES TA KSDSGHVK+KGSS+VN LDAQSSLPS AGQSG KS E PKQV+ESI RA
Sbjct: 1297 SERTESSTATKSDSGHVKLKGSSMVNELDAQSSLPSPAGQSGALKSVENPKQVQESISRA 1356
Query: 181 SDEHATRTAESRTSAKRSVPAGSLSKPSKQDPAKEDGRSGKPVTRASGSMSSDKDIQPHA 240
DEH TR ESRTS KR + SL KPSKQDP KED RSGK V RASGS S+DKD+Q HA
Sbjct: 1357 PDEHVTRIVESRTSVKRKMATVSLLKPSKQDPLKEDARSGKSVARASGSSSNDKDLQTHA 1416
Query: 241 SEGRHXXXXXXXXXXXXXXXXXXXXK--APSAKVSFDGPGNESKADIGASKSSDIRASMG 298
S+GRH K APSAK++FDG GNESKA++GA+KS SM
Sbjct: 1417 SDGRHTRTNVSSSVNANGYSVPGSAKGLAPSAKIAFDGSGNESKAEVGAAKS-----SMV 1471
Query: 299 KDDGNDITDFTRG-SSRVVHSPRHENTVTSKSSDKSQKRASS 339
KDDGNDI DFTRG SSR+VHSPRHENT T+KSSDK QKR S
Sbjct: 1472 KDDGNDIADFTRGSSSRLVHSPRHENTATTKSSDKIQKRTGS 1513
>Medtr7g117220.3 | THO complex subunit 2 | HC | chr7:48436986-48414077
| 20130731
Length = 1664
Score = 427 bits (1099), Expect = e-120, Method: Compositional matrix adjust.
Identities = 234/342 (68%), Positives = 253/342 (73%), Gaps = 8/342 (2%)
Query: 1 MFTKISSVFPVTRKSGINLEKRVAKIKGDEREDLKXXXXXXXXXXXXRKPSWVTDEEFGM 60
M TKISSVFPVT KSG +LEKRVAKIK DEREDLK RKP WVT EEFGM
Sbjct: 985 MLTKISSVFPVTLKSGTSLEKRVAKIKSDEREDLKVLATGVAAALAARKPYWVTAEEFGM 1044
Query: 61 GYLELKPAPSMTKSSAGTSVTVQSGISLGVSQTESASGKHLDSGNTVKDQITRTKTADGK 120
GY+ K APSMTKS+AG S VQSGI L VSQTESASGKHLDSGNTVKDQ RTKTAD +
Sbjct: 1045 GYIVFKSAPSMTKSAAGNSAAVQSGIGLHVSQTESASGKHLDSGNTVKDQTVRTKTADDE 1104
Query: 121 SERSESITAMKSDSGHVKIKGSSIVNGLDAQSSLPSSAGQSGTSKSGETPKQVEESIIRA 180
SER+ES TA KSDSGHVK+KGSS+VN LDAQSSLPS AGQSG KS E PKQV+ESI RA
Sbjct: 1105 SERTESSTATKSDSGHVKLKGSSMVNELDAQSSLPSPAGQSGALKSVENPKQVQESISRA 1164
Query: 181 SDEHATRTAESRTSAKRSVPAGSLSKPSKQDPAKEDGRSGKPVTRASGSMSSDKDIQPHA 240
DEH TR ESRTS KR + SL KPSKQDP KED RSGK V RASGS S+DKD+Q HA
Sbjct: 1165 PDEHVTRIVESRTSVKRKMATVSLLKPSKQDPLKEDARSGKSVARASGSSSNDKDLQTHA 1224
Query: 241 SEGRHXXXXXXXXXXXXXXXXXXXXK--APSAKVSFDGPGNESKADIGASKSSDIRASMG 298
S+GRH K APSAK++FDG GNESKA++GA+KS SM
Sbjct: 1225 SDGRHTRTNVSSSVNANGYSVPGSAKGLAPSAKIAFDGSGNESKAEVGAAKS-----SMV 1279
Query: 299 KDDGNDITDFTRG-SSRVVHSPRHENTVTSKSSDKSQKRASS 339
KDDGNDI DFTRG SSR+VHSPRHENT T+KSSDK QKR S
Sbjct: 1280 KDDGNDIADFTRGSSSRLVHSPRHENTATTKSSDKIQKRTGS 1321
>Medtr7g117220.4 | THO complex subunit 2 | HC | chr7:48436522-48414077
| 20130731
Length = 1664
Score = 427 bits (1099), Expect = e-120, Method: Compositional matrix adjust.
Identities = 234/342 (68%), Positives = 253/342 (73%), Gaps = 8/342 (2%)
Query: 1 MFTKISSVFPVTRKSGINLEKRVAKIKGDEREDLKXXXXXXXXXXXXRKPSWVTDEEFGM 60
M TKISSVFPVT KSG +LEKRVAKIK DEREDLK RKP WVT EEFGM
Sbjct: 985 MLTKISSVFPVTLKSGTSLEKRVAKIKSDEREDLKVLATGVAAALAARKPYWVTAEEFGM 1044
Query: 61 GYLELKPAPSMTKSSAGTSVTVQSGISLGVSQTESASGKHLDSGNTVKDQITRTKTADGK 120
GY+ K APSMTKS+AG S VQSGI L VSQTESASGKHLDSGNTVKDQ RTKTAD +
Sbjct: 1045 GYIVFKSAPSMTKSAAGNSAAVQSGIGLHVSQTESASGKHLDSGNTVKDQTVRTKTADDE 1104
Query: 121 SERSESITAMKSDSGHVKIKGSSIVNGLDAQSSLPSSAGQSGTSKSGETPKQVEESIIRA 180
SER+ES TA KSDSGHVK+KGSS+VN LDAQSSLPS AGQSG KS E PKQV+ESI RA
Sbjct: 1105 SERTESSTATKSDSGHVKLKGSSMVNELDAQSSLPSPAGQSGALKSVENPKQVQESISRA 1164
Query: 181 SDEHATRTAESRTSAKRSVPAGSLSKPSKQDPAKEDGRSGKPVTRASGSMSSDKDIQPHA 240
DEH TR ESRTS KR + SL KPSKQDP KED RSGK V RASGS S+DKD+Q HA
Sbjct: 1165 PDEHVTRIVESRTSVKRKMATVSLLKPSKQDPLKEDARSGKSVARASGSSSNDKDLQTHA 1224
Query: 241 SEGRHXXXXXXXXXXXXXXXXXXXXK--APSAKVSFDGPGNESKADIGASKSSDIRASMG 298
S+GRH K APSAK++FDG GNESKA++GA+KS SM
Sbjct: 1225 SDGRHTRTNVSSSVNANGYSVPGSAKGLAPSAKIAFDGSGNESKAEVGAAKS-----SMV 1279
Query: 299 KDDGNDITDFTRG-SSRVVHSPRHENTVTSKSSDKSQKRASS 339
KDDGNDI DFTRG SSR+VHSPRHENT T+KSSDK QKR S
Sbjct: 1280 KDDGNDIADFTRGSSSRLVHSPRHENTATTKSSDKIQKRTGS 1321