Miyakogusa Predicted Gene

Lj0g3v0108779.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0108779.1 Non Characterized Hit- tr|I1K5H3|I1K5H3_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.44868
PE,82.78,0,Thoc2,THO complex, subunitTHOC2, N-terminal; SUBFAMILY NOT
NAMED,NULL; THO2 PROTEIN,NULL; coiled-coi,gene.g8227.t1.1
         (629 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g106090.1 | THO complex subunit 2 | HC | chr8:44793649-447...  1041   0.0  
Medtr7g117220.1 | THO complex subunit 2 | HC | chr7:48439201-484...  1016   0.0  
Medtr7g117220.2 | THO complex subunit 2 | HC | chr7:48439247-484...  1015   0.0  
Medtr7g117220.3 | THO complex subunit 2 | HC | chr7:48436986-484...   797   0.0  
Medtr7g117220.4 | THO complex subunit 2 | HC | chr7:48436522-484...   797   0.0  

>Medtr8g106090.1 | THO complex subunit 2 | HC |
           chr8:44793649-44773619 | 20130731
          Length = 1858

 Score = 1041 bits (2691), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 516/634 (81%), Positives = 548/634 (86%), Gaps = 48/634 (7%)

Query: 1   MSFPAIERVYVTEDCVREWKTGNAA-------------------LKVRGELPLHKCKTAL 41
           MS P ++ V++TEDCVREWK+ N A                     VRGELP  KCK AL
Sbjct: 1   MSVPPVQCVFITEDCVREWKSSNNASFKLSQPVPLLRFLYELSWTMVRGELPFPKCKLAL 60

Query: 42  DSVIFSEKASPDKIASNFADIVTQMAQDHTMSGEFRSRLIKLARWLVESDLVPVRLLHER 101
           DSV+FS+KASP KIASNFADIV+QMAQD T+SGEFRSRLIKLARWLVES+LVPVRLL ER
Sbjct: 61  DSVVFSDKASPHKIASNFADIVSQMAQDLTLSGEFRSRLIKLARWLVESELVPVRLLQER 120

Query: 102 CEEEFLGEAELIKIKAQELKGKEVRVNTRLLYQQTKFNLLREESEGYAKL---------- 151
           CEEEFLGEAE IKIKAQELKGKEVRVNTRLLYQQTKFNLLREESEGYAKL          
Sbjct: 121 CEEEFLGEAEFIKIKAQELKGKEVRVNTRLLYQQTKFNLLREESEGYAKLVTLLCRDSEA 180

Query: 152 --------------SLIGHFDLDPNRVFDIVLECFELQPNNDVFIELIPIFPKSHASQIL 197
                         SLIGHFDLDPNRVFDIVLECFELQP+NDVFIELIPIFPKSHASQIL
Sbjct: 181 PTQKGSTSTIGIIKSLIGHFDLDPNRVFDIVLECFELQPDNDVFIELIPIFPKSHASQIL 240

Query: 198 GFKFQYYQRMEVSNPVPFGLYRLTALLVKQDFIDLDSIYAHLLPKDDEAFEHYNTFSSKR 257
           GFKFQYYQRMEVSNPVP+GLYRL ALLVKQDFIDLDSIYAHLLPKD EAFEHY+TFSSKR
Sbjct: 241 GFKFQYYQRMEVSNPVPYGLYRLAALLVKQDFIDLDSIYAHLLPKDVEAFEHYSTFSSKR 300

Query: 258 FDEANKIGRINLAATGKDLMDEEKQGDVTKDLFAALDTETEAIEERMSELQDSQTLGLLT 317
            DEANKIG+INLAATGKDLMDEEK GDVT DLFAAL  ET+A++ER SELQ++QTLGLL 
Sbjct: 301 LDEANKIGKINLAATGKDLMDEEKTGDVTIDLFAALAMETDAVDERKSELQNNQTLGLLI 360

Query: 318 GFLAVDDWYHAHILFERLSTLNAVEHTQICDSLFRLIEKSISSAYDVIRQAHVQNPGSST 377
           GFL+VDDWYHAH+LFERLS LN VEH QICDSLFRLIEKSISS YDVIRQAH+QN G ST
Sbjct: 361 GFLSVDDWYHAHVLFERLSALNPVEHIQICDSLFRLIEKSISSPYDVIRQAHLQNSGLST 420

Query: 378 GGSTDAMDVDNSSGHGSFINLPKELFQMLACTGPYLYRDTMLLQKVHKVCRVLRGYYLSA 437
           GGSTDAMDVDN SGH SFI+LPKELFQML CTGP+LYRDTMLLQ   KVCRVLRGYYLSA
Sbjct: 421 GGSTDAMDVDNPSGHNSFIDLPKELFQMLGCTGPFLYRDTMLLQ---KVCRVLRGYYLSA 477

Query: 438 LELVNRGNGALNPQSHVTGSPHLHLKDARLRVEDALGACLLPSLQLIPANPAVGQEIWEL 497
           LELV++G GALNPQ HV G+P+LHLK+ARLRVEDALGACLLPSLQL+PANPAVGQEIWEL
Sbjct: 478 LELVSQG-GALNPQFHV-GNPNLHLKEARLRVEDALGACLLPSLQLVPANPAVGQEIWEL 535

Query: 498 MSLLPYEVRYRLYGEWEKDDERIPMLLAARQTAKLDTRRILKRLAKENVKQLGRMVAKLA 557
           MSLLPYE RY LYGEWEKDD+R PMLLA RQTAKLDTRRILKRLAKEN+KQLGRMVAKLA
Sbjct: 536 MSLLPYEARYHLYGEWEKDDDRYPMLLATRQTAKLDTRRILKRLAKENLKQLGRMVAKLA 595

Query: 558 HANPMTVLHTIVHQIEAYRDMITPVVDAFKYLTQ 591
           HANPMTVL TIVHQIEAYRDMITPVVDAFKYLTQ
Sbjct: 596 HANPMTVLRTIVHQIEAYRDMITPVVDAFKYLTQ 629


>Medtr7g117220.1 | THO complex subunit 2 | HC |
           chr7:48439201-48414077 | 20130731
          Length = 1856

 Score = 1016 bits (2627), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 502/633 (79%), Positives = 538/633 (84%), Gaps = 48/633 (7%)

Query: 4   PAIERVYVTEDCVREWKTGNA--------------------ALKVRGELPLHKCKTALDS 43
           P+++  YVTED VREW +GNA                    +  VRGELP  KCK ALDS
Sbjct: 5   PSVQCAYVTEDRVREWSSGNANPSLNLSQPVPMLRFLYELSSTMVRGELPFPKCKVALDS 64

Query: 44  VIFSE-KASPDKIASNFADIVTQMAQDHTMSGEFRSRLIKLARWLVESDLVPVRLLHERC 102
           V FSE KAS + +ASNFADI++QMAQD T+SGEFRSRLIKLARWLVES LVPVRLL ERC
Sbjct: 65  VTFSEVKASAENLASNFADIISQMAQDLTLSGEFRSRLIKLARWLVESKLVPVRLLQERC 124

Query: 103 EEEFLGEAELIKIKAQELKGKEVRVNTRLLYQQTKFNLLREESEGYAKL----------- 151
           EEEFLGEAE IKIKAQELKGKEVRVNTRLLYQQTKFNLLREESEGYAKL           
Sbjct: 125 EEEFLGEAEFIKIKAQELKGKEVRVNTRLLYQQTKFNLLREESEGYAKLVTLLCRDSEAL 184

Query: 152 -------------SLIGHFDLDPNRVFDIVLECFELQPNNDVFIELIPIFPKSHASQILG 198
                        SLIGHFDLDPNRVFDIVLECFELQP+NDVFIELIPIFPKS ASQILG
Sbjct: 185 TEKGSASTMGIIKSLIGHFDLDPNRVFDIVLECFELQPDNDVFIELIPIFPKSQASQILG 244

Query: 199 FKFQYYQRMEVSNPVPFGLYRLTALLVKQDFIDLDSIYAHLLPKDDEAFEHYNTFSSKRF 258
           FKFQYYQRMEVSNPVP+GLYRL ALLVKQDFIDLDSIYAHLLPKD+EAFEH++TFSSKR 
Sbjct: 245 FKFQYYQRMEVSNPVPYGLYRLAALLVKQDFIDLDSIYAHLLPKDEEAFEHHSTFSSKRL 304

Query: 259 DEANKIGRINLAATGKDLMDEEKQGDVTKDLFAALDTETEAIEERMSELQDSQTLGLLTG 318
           DEANKIG+INLAATGKDLMD+EK GDVT DLFAA+  ET+AI ER SELQ+SQTLGLLTG
Sbjct: 305 DEANKIGKINLAATGKDLMDDEKTGDVTVDLFAAIVMETDAIGERKSELQNSQTLGLLTG 364

Query: 319 FLAVDDWYHAHILFERLSTLNAVEHTQICDSLFRLIEKSISSAYDVIRQAHVQNPGSSTG 378
           FL+ DDWYHAH+LFERLS LN VEH QICD+LFR IEKSISS YD IRQAHVQ  GSSTG
Sbjct: 365 FLSADDWYHAHVLFERLSPLNPVEHIQICDTLFRFIEKSISSPYDAIRQAHVQKSGSSTG 424

Query: 379 GSTDAMDVDNSSGHGSFINLPKELFQMLACTGPYLYRDTMLLQKVHKVCRVLRGYYLSAL 438
           GSTDA+DVDN SG+ SFI+LPKE+FQMLACTGP+LYRDTMLLQ   KVCR+LRGYYLSAL
Sbjct: 425 GSTDAIDVDNPSGYSSFIDLPKEIFQMLACTGPFLYRDTMLLQ---KVCRLLRGYYLSAL 481

Query: 439 ELVNRGNGALNPQSHVTGSPHLHLKDARLRVEDALGACLLPSLQLIPANPAVGQEIWELM 498
           ELV+ G+GALNPQ H  G+PHLHLK+ARLRVEDALGACLLPSLQL+PANPAVGQ IWELM
Sbjct: 482 ELVSHGDGALNPQFHFIGNPHLHLKEARLRVEDALGACLLPSLQLVPANPAVGQAIWELM 541

Query: 499 SLLPYEVRYRLYGEWEKDDERIPMLLAARQTAKLDTRRILKRLAKENVKQLGRMVAKLAH 558
           SLLPYE RY LYGEWEKDD+R PMLLAARQTAKLDTRRILKRLAKEN+KQLGRMVAKLAH
Sbjct: 542 SLLPYEARYHLYGEWEKDDDRYPMLLAARQTAKLDTRRILKRLAKENLKQLGRMVAKLAH 601

Query: 559 ANPMTVLHTIVHQIEAYRDMITPVVDAFKYLTQ 591
           ANPMTVL TIV QIEAYR MITPVVDAFKYLTQ
Sbjct: 602 ANPMTVLRTIVQQIEAYRHMITPVVDAFKYLTQ 634


>Medtr7g117220.2 | THO complex subunit 2 | HC |
           chr7:48439247-48414498 | 20130731
          Length = 1836

 Score = 1015 bits (2625), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 502/633 (79%), Positives = 538/633 (84%), Gaps = 48/633 (7%)

Query: 4   PAIERVYVTEDCVREWKTGNA--------------------ALKVRGELPLHKCKTALDS 43
           P+++  YVTED VREW +GNA                    +  VRGELP  KCK ALDS
Sbjct: 5   PSVQCAYVTEDRVREWSSGNANPSLNLSQPVPMLRFLYELSSTMVRGELPFPKCKVALDS 64

Query: 44  VIFSE-KASPDKIASNFADIVTQMAQDHTMSGEFRSRLIKLARWLVESDLVPVRLLHERC 102
           V FSE KAS + +ASNFADI++QMAQD T+SGEFRSRLIKLARWLVES LVPVRLL ERC
Sbjct: 65  VTFSEVKASAENLASNFADIISQMAQDLTLSGEFRSRLIKLARWLVESKLVPVRLLQERC 124

Query: 103 EEEFLGEAELIKIKAQELKGKEVRVNTRLLYQQTKFNLLREESEGYAKL----------- 151
           EEEFLGEAE IKIKAQELKGKEVRVNTRLLYQQTKFNLLREESEGYAKL           
Sbjct: 125 EEEFLGEAEFIKIKAQELKGKEVRVNTRLLYQQTKFNLLREESEGYAKLVTLLCRDSEAL 184

Query: 152 -------------SLIGHFDLDPNRVFDIVLECFELQPNNDVFIELIPIFPKSHASQILG 198
                        SLIGHFDLDPNRVFDIVLECFELQP+NDVFIELIPIFPKS ASQILG
Sbjct: 185 TEKGSASTMGIIKSLIGHFDLDPNRVFDIVLECFELQPDNDVFIELIPIFPKSQASQILG 244

Query: 199 FKFQYYQRMEVSNPVPFGLYRLTALLVKQDFIDLDSIYAHLLPKDDEAFEHYNTFSSKRF 258
           FKFQYYQRMEVSNPVP+GLYRL ALLVKQDFIDLDSIYAHLLPKD+EAFEH++TFSSKR 
Sbjct: 245 FKFQYYQRMEVSNPVPYGLYRLAALLVKQDFIDLDSIYAHLLPKDEEAFEHHSTFSSKRL 304

Query: 259 DEANKIGRINLAATGKDLMDEEKQGDVTKDLFAALDTETEAIEERMSELQDSQTLGLLTG 318
           DEANKIG+INLAATGKDLMD+EK GDVT DLFAA+  ET+AI ER SELQ+SQTLGLLTG
Sbjct: 305 DEANKIGKINLAATGKDLMDDEKTGDVTVDLFAAIVMETDAIGERKSELQNSQTLGLLTG 364

Query: 319 FLAVDDWYHAHILFERLSTLNAVEHTQICDSLFRLIEKSISSAYDVIRQAHVQNPGSSTG 378
           FL+ DDWYHAH+LFERLS LN VEH QICD+LFR IEKSISS YD IRQAHVQ  GSSTG
Sbjct: 365 FLSADDWYHAHVLFERLSPLNPVEHIQICDTLFRFIEKSISSPYDAIRQAHVQKSGSSTG 424

Query: 379 GSTDAMDVDNSSGHGSFINLPKELFQMLACTGPYLYRDTMLLQKVHKVCRVLRGYYLSAL 438
           GSTDA+DVDN SG+ SFI+LPKE+FQMLACTGP+LYRDTMLLQ   KVCR+LRGYYLSAL
Sbjct: 425 GSTDAIDVDNPSGYSSFIDLPKEIFQMLACTGPFLYRDTMLLQ---KVCRLLRGYYLSAL 481

Query: 439 ELVNRGNGALNPQSHVTGSPHLHLKDARLRVEDALGACLLPSLQLIPANPAVGQEIWELM 498
           ELV+ G+GALNPQ H  G+PHLHLK+ARLRVEDALGACLLPSLQL+PANPAVGQ IWELM
Sbjct: 482 ELVSHGDGALNPQFHFIGNPHLHLKEARLRVEDALGACLLPSLQLVPANPAVGQAIWELM 541

Query: 499 SLLPYEVRYRLYGEWEKDDERIPMLLAARQTAKLDTRRILKRLAKENVKQLGRMVAKLAH 558
           SLLPYE RY LYGEWEKDD+R PMLLAARQTAKLDTRRILKRLAKEN+KQLGRMVAKLAH
Sbjct: 542 SLLPYEARYHLYGEWEKDDDRYPMLLAARQTAKLDTRRILKRLAKENLKQLGRMVAKLAH 601

Query: 559 ANPMTVLHTIVHQIEAYRDMITPVVDAFKYLTQ 591
           ANPMTVL TIV QIEAYR MITPVVDAFKYLTQ
Sbjct: 602 ANPMTVLRTIVQQIEAYRHMITPVVDAFKYLTQ 634


>Medtr7g117220.3 | THO complex subunit 2 | HC |
           chr7:48436986-48414077 | 20130731
          Length = 1664

 Score =  797 bits (2058), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/440 (86%), Positives = 406/440 (92%), Gaps = 3/440 (0%)

Query: 152 SLIGHFDLDPNRVFDIVLECFELQPNNDVFIELIPIFPKSHASQILGFKFQYYQRMEVSN 211
           SLIGHFDLDPNRVFDIVLECFELQP+NDVFIELIPIFPKS ASQILGFKFQYYQRMEVSN
Sbjct: 6   SLIGHFDLDPNRVFDIVLECFELQPDNDVFIELIPIFPKSQASQILGFKFQYYQRMEVSN 65

Query: 212 PVPFGLYRLTALLVKQDFIDLDSIYAHLLPKDDEAFEHYNTFSSKRFDEANKIGRINLAA 271
           PVP+GLYRL ALLVKQDFIDLDSIYAHLLPKD+EAFEH++TFSSKR DEANKIG+INLAA
Sbjct: 66  PVPYGLYRLAALLVKQDFIDLDSIYAHLLPKDEEAFEHHSTFSSKRLDEANKIGKINLAA 125

Query: 272 TGKDLMDEEKQGDVTKDLFAALDTETEAIEERMSELQDSQTLGLLTGFLAVDDWYHAHIL 331
           TGKDLMD+EK GDVT DLFAA+  ET+AI ER SELQ+SQTLGLLTGFL+ DDWYHAH+L
Sbjct: 126 TGKDLMDDEKTGDVTVDLFAAIVMETDAIGERKSELQNSQTLGLLTGFLSADDWYHAHVL 185

Query: 332 FERLSTLNAVEHTQICDSLFRLIEKSISSAYDVIRQAHVQNPGSSTGGSTDAMDVDNSSG 391
           FERLS LN VEH QICD+LFR IEKSISS YD IRQAHVQ  GSSTGGSTDA+DVDN SG
Sbjct: 186 FERLSPLNPVEHIQICDTLFRFIEKSISSPYDAIRQAHVQKSGSSTGGSTDAIDVDNPSG 245

Query: 392 HGSFINLPKELFQMLACTGPYLYRDTMLLQKVHKVCRVLRGYYLSALELVNRGNGALNPQ 451
           + SFI+LPKE+FQMLACTGP+LYRDTMLLQ   KVCR+LRGYYLSALELV+ G+GALNPQ
Sbjct: 246 YSSFIDLPKEIFQMLACTGPFLYRDTMLLQ---KVCRLLRGYYLSALELVSHGDGALNPQ 302

Query: 452 SHVTGSPHLHLKDARLRVEDALGACLLPSLQLIPANPAVGQEIWELMSLLPYEVRYRLYG 511
            H  G+PHLHLK+ARLRVEDALGACLLPSLQL+PANPAVGQ IWELMSLLPYE RY LYG
Sbjct: 303 FHFIGNPHLHLKEARLRVEDALGACLLPSLQLVPANPAVGQAIWELMSLLPYEARYHLYG 362

Query: 512 EWEKDDERIPMLLAARQTAKLDTRRILKRLAKENVKQLGRMVAKLAHANPMTVLHTIVHQ 571
           EWEKDD+R PMLLAARQTAKLDTRRILKRLAKEN+KQLGRMVAKLAHANPMTVL TIV Q
Sbjct: 363 EWEKDDDRYPMLLAARQTAKLDTRRILKRLAKENLKQLGRMVAKLAHANPMTVLRTIVQQ 422

Query: 572 IEAYRDMITPVVDAFKYLTQ 591
           IEAYR MITPVVDAFKYLTQ
Sbjct: 423 IEAYRHMITPVVDAFKYLTQ 442


>Medtr7g117220.4 | THO complex subunit 2 | HC |
           chr7:48436522-48414077 | 20130731
          Length = 1664

 Score =  797 bits (2058), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/440 (86%), Positives = 406/440 (92%), Gaps = 3/440 (0%)

Query: 152 SLIGHFDLDPNRVFDIVLECFELQPNNDVFIELIPIFPKSHASQILGFKFQYYQRMEVSN 211
           SLIGHFDLDPNRVFDIVLECFELQP+NDVFIELIPIFPKS ASQILGFKFQYYQRMEVSN
Sbjct: 6   SLIGHFDLDPNRVFDIVLECFELQPDNDVFIELIPIFPKSQASQILGFKFQYYQRMEVSN 65

Query: 212 PVPFGLYRLTALLVKQDFIDLDSIYAHLLPKDDEAFEHYNTFSSKRFDEANKIGRINLAA 271
           PVP+GLYRL ALLVKQDFIDLDSIYAHLLPKD+EAFEH++TFSSKR DEANKIG+INLAA
Sbjct: 66  PVPYGLYRLAALLVKQDFIDLDSIYAHLLPKDEEAFEHHSTFSSKRLDEANKIGKINLAA 125

Query: 272 TGKDLMDEEKQGDVTKDLFAALDTETEAIEERMSELQDSQTLGLLTGFLAVDDWYHAHIL 331
           TGKDLMD+EK GDVT DLFAA+  ET+AI ER SELQ+SQTLGLLTGFL+ DDWYHAH+L
Sbjct: 126 TGKDLMDDEKTGDVTVDLFAAIVMETDAIGERKSELQNSQTLGLLTGFLSADDWYHAHVL 185

Query: 332 FERLSTLNAVEHTQICDSLFRLIEKSISSAYDVIRQAHVQNPGSSTGGSTDAMDVDNSSG 391
           FERLS LN VEH QICD+LFR IEKSISS YD IRQAHVQ  GSSTGGSTDA+DVDN SG
Sbjct: 186 FERLSPLNPVEHIQICDTLFRFIEKSISSPYDAIRQAHVQKSGSSTGGSTDAIDVDNPSG 245

Query: 392 HGSFINLPKELFQMLACTGPYLYRDTMLLQKVHKVCRVLRGYYLSALELVNRGNGALNPQ 451
           + SFI+LPKE+FQMLACTGP+LYRDTMLLQ   KVCR+LRGYYLSALELV+ G+GALNPQ
Sbjct: 246 YSSFIDLPKEIFQMLACTGPFLYRDTMLLQ---KVCRLLRGYYLSALELVSHGDGALNPQ 302

Query: 452 SHVTGSPHLHLKDARLRVEDALGACLLPSLQLIPANPAVGQEIWELMSLLPYEVRYRLYG 511
            H  G+PHLHLK+ARLRVEDALGACLLPSLQL+PANPAVGQ IWELMSLLPYE RY LYG
Sbjct: 303 FHFIGNPHLHLKEARLRVEDALGACLLPSLQLVPANPAVGQAIWELMSLLPYEARYHLYG 362

Query: 512 EWEKDDERIPMLLAARQTAKLDTRRILKRLAKENVKQLGRMVAKLAHANPMTVLHTIVHQ 571
           EWEKDD+R PMLLAARQTAKLDTRRILKRLAKEN+KQLGRMVAKLAHANPMTVL TIV Q
Sbjct: 363 EWEKDDDRYPMLLAARQTAKLDTRRILKRLAKENLKQLGRMVAKLAHANPMTVLRTIVQQ 422

Query: 572 IEAYRDMITPVVDAFKYLTQ 591
           IEAYR MITPVVDAFKYLTQ
Sbjct: 423 IEAYRHMITPVVDAFKYLTQ 442