Miyakogusa Predicted Gene

Lj0g3v0107649.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0107649.1 tr|Q9FPI0|Q9FPI0_ARATH 3'-5'-exoribonuclease
family protein OS=Arabidopsis thaliana
GN=AT3g07750/F17,77.78,4e-19,coiled-coil,NULL; seg,NULL,CUFF.6156.1
         (62 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g077430.4 | exosome complex exonuclease RRP41 | HC | chr8:...    96   9e-21
Medtr8g077430.5 | exosome complex exonuclease RRP41 | HC | chr8:...    96   9e-21
Medtr8g077430.1 | exosome complex exonuclease RRP41 | HC | chr8:...    95   1e-20
Medtr8g077430.2 | exosome complex exonuclease RRP41 | HC | chr8:...    95   1e-20
Medtr8g077430.3 | exosome complex exonuclease RRP41 | HC | chr8:...    95   1e-20
Medtr1g031820.1 | exosome complex exonuclease RRP41 | HC | chr1:...    92   1e-19

>Medtr8g077430.4 | exosome complex exonuclease RRP41 | HC |
           chr8:32862793-32866106 | 20130731
          Length = 217

 Score = 95.9 bits (237), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 44/49 (89%), Positives = 48/49 (97%)

Query: 1   MISAVSISVNRQGHICGVTKRGGAGLDPSIVLDMISVAKHVSEQLINKL 49
           M SAVSIS+NRQGHICGVTKRGGAGLDPS++LDM+SVAKHVSEQLINKL
Sbjct: 156 MSSAVSISINRQGHICGVTKRGGAGLDPSVILDMVSVAKHVSEQLINKL 204


>Medtr8g077430.5 | exosome complex exonuclease RRP41 | HC |
           chr8:32862793-32866106 | 20130731
          Length = 217

 Score = 95.9 bits (237), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 44/49 (89%), Positives = 48/49 (97%)

Query: 1   MISAVSISVNRQGHICGVTKRGGAGLDPSIVLDMISVAKHVSEQLINKL 49
           M SAVSIS+NRQGHICGVTKRGGAGLDPS++LDM+SVAKHVSEQLINKL
Sbjct: 156 MSSAVSISINRQGHICGVTKRGGAGLDPSVILDMVSVAKHVSEQLINKL 204


>Medtr8g077430.1 | exosome complex exonuclease RRP41 | HC |
           chr8:32861534-32866106 | 20130731
          Length = 286

 Score = 95.1 bits (235), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 44/49 (89%), Positives = 48/49 (97%)

Query: 1   MISAVSISVNRQGHICGVTKRGGAGLDPSIVLDMISVAKHVSEQLINKL 49
           M SAVSIS+NRQGHICGVTKRGGAGLDPS++LDM+SVAKHVSEQLINKL
Sbjct: 225 MSSAVSISINRQGHICGVTKRGGAGLDPSVILDMVSVAKHVSEQLINKL 273


>Medtr8g077430.2 | exosome complex exonuclease RRP41 | HC |
           chr8:32861534-32866106 | 20130731
          Length = 286

 Score = 95.1 bits (235), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 44/49 (89%), Positives = 48/49 (97%)

Query: 1   MISAVSISVNRQGHICGVTKRGGAGLDPSIVLDMISVAKHVSEQLINKL 49
           M SAVSIS+NRQGHICGVTKRGGAGLDPS++LDM+SVAKHVSEQLINKL
Sbjct: 225 MSSAVSISINRQGHICGVTKRGGAGLDPSVILDMVSVAKHVSEQLINKL 273


>Medtr8g077430.3 | exosome complex exonuclease RRP41 | HC |
           chr8:32861534-32866106 | 20130731
          Length = 286

 Score = 95.1 bits (235), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 44/49 (89%), Positives = 48/49 (97%)

Query: 1   MISAVSISVNRQGHICGVTKRGGAGLDPSIVLDMISVAKHVSEQLINKL 49
           M SAVSIS+NRQGHICGVTKRGGAGLDPS++LDM+SVAKHVSEQLINKL
Sbjct: 225 MSSAVSISINRQGHICGVTKRGGAGLDPSVILDMVSVAKHVSEQLINKL 273


>Medtr1g031820.1 | exosome complex exonuclease RRP41 | HC |
           chr1:11167445-11172254 | 20130731
          Length = 683

 Score = 92.0 bits (227), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 41/49 (83%), Positives = 48/49 (97%)

Query: 1   MISAVSISVNRQGHICGVTKRGGAGLDPSIVLDMISVAKHVSEQLINKL 49
           M SAVSIS+NR+GHICG+TKRGGAGLDPS++LDM+SVAKHVSEQL+NKL
Sbjct: 622 MSSAVSISINRKGHICGITKRGGAGLDPSVILDMVSVAKHVSEQLMNKL 670