Miyakogusa Predicted Gene

Lj0g3v0107329.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0107329.2 Non Characterized Hit- tr|D7M148|D7M148_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,44.16,1e-17,seg,NULL; coiled-coil,NULL,CUFF.6126.2
         (216 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g086460.1 | GLE1-like protein | HC | chr3:39172928-3917955...   201   4e-52

>Medtr3g086460.1 | GLE1-like protein | HC | chr3:39172928-39179553 |
           20130731
          Length = 619

 Score =  201 bits (511), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 116/216 (53%), Positives = 134/216 (62%), Gaps = 5/216 (2%)

Query: 3   DSESEDDYVNDDRALAVA--GKRITCDELYLXXXXXXXVMSTFEGQPYLMDEVEEVEGAL 60
           +++SEDD   DD+AL V+  GK  TCDE+YL       V S  E QPYLM++V EVEGAL
Sbjct: 78  ETDSEDD---DDKALVVSDTGKHFTCDEIYLSDSDDSDVESALEVQPYLMNKVGEVEGAL 134

Query: 61  FELTHEHQLRVKDEIRSKISVLETALVMESENSTSSLLRVEKYKETRRELDKKFDTQYQR 120
            ELTH+HQLRV D IR+KIS LE AL+ ES+NS SSLLRVEK+K+TR+ELDKKFDTQYQR
Sbjct: 135 IELTHDHQLRVNDGIRNKISALEIALLNESQNSISSLLRVEKFKDTRQELDKKFDTQYQR 194

Query: 121 RIAEELDNHLTVVQQDXXXXXXXXXXXXXNDAANEEAKRKIXXXXXXXXXXXXXXXXXXX 180
           +IAE LDN LT VQQD             +DAA EEAKRK+                   
Sbjct: 195 QIAEALDNQLTAVQQDRELRSQIEERKIRSDAAYEEAKRKVALQEEKQQQEKAKAEAEAK 254

Query: 181 XXXXXXXXXXXXXXXXXVMEANTKAAMEAEKRATAE 216
                            VMEA TKAAMEAEKRA AE
Sbjct: 255 LKAEEVKQAALEAEKKAVMEAKTKAAMEAEKRAAAE 290